Wall clock time and date at job start Tue Mar 31 2020 21:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47262 * 2 1 4 4 C 1.46501 * 119.99969 * 270.00429 * 3 2 1 5 5 C 1.50704 * 109.46832 * 269.99868 * 4 3 2 6 6 H 1.08001 * 119.99659 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47241 * 89.99376 * 9 7 5 11 11 H 1.48501 * 109.47319 * 210.00112 * 9 7 5 12 12 H 1.48504 * 109.46771 * 329.99807 * 9 7 5 13 13 C 1.34770 * 119.99784 * 89.99881 * 3 2 1 14 14 O 1.21283 * 120.00157 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00128 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47232 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00228 * 66.04069 * 16 15 13 18 18 C 1.46897 * 110.99908 * 190.00099 * 16 15 13 19 19 C 1.52997 * 109.47658 * 75.84267 * 18 16 15 20 20 O 1.42905 * 109.47027 * 64.93724 * 19 18 16 21 21 C 1.35940 * 117.00237 * 180.02562 * 20 19 18 22 22 C 1.38710 * 120.03040 * 0.27379 * 21 20 19 23 23 C 1.38151 * 119.97277 * 180.25469 * 22 21 20 24 24 C 1.38456 * 120.02833 * 359.46997 * 23 22 21 25 25 F 1.35097 * 119.97217 * 180.29769 * 24 23 22 26 26 C 1.38458 * 120.05765 * 0.27440 * 24 23 22 27 27 C 1.38146 * 120.03250 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.46693 * 300.00249 * 1 2 3 29 29 H 1.09007 * 109.46940 * 59.99933 * 1 2 3 30 30 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46861 * 240.00197 * 2 1 3 32 32 H 1.08994 * 109.47092 * 120.00685 * 2 1 3 33 33 H 1.09002 * 109.47010 * 29.99395 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99894 * 4 3 2 35 35 H 0.96996 * 120.00004 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47407 * 59.99407 * 15 13 3 37 37 H 1.09006 * 109.46908 * 299.99519 * 15 13 3 38 38 H 1.09002 * 109.47049 * 188.99013 * 17 16 15 39 39 H 1.08998 * 109.46650 * 308.98776 * 17 16 15 40 40 H 1.08996 * 109.46858 * 68.99193 * 17 16 15 41 41 H 1.08999 * 109.46862 * 315.83899 * 18 16 15 42 42 H 1.09002 * 109.47122 * 195.84481 * 18 16 15 43 43 H 1.09002 * 109.47202 * 304.94080 * 19 18 16 44 44 H 1.08994 * 109.47357 * 184.93294 * 19 18 16 45 45 H 1.08004 * 120.01534 * 0.02562 * 22 21 20 46 46 H 1.07994 * 119.98339 * 179.74768 * 23 22 21 47 47 H 1.08003 * 119.98226 * 179.97438 * 26 24 23 48 48 H 1.08001 * 120.01629 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0975 -3.4164 10 1 5.9777 0.8768 -4.2596 11 1 6.3928 3.2652 -4.1989 12 1 6.7737 1.9176 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3098 2.2061 3.5889 17 6 1.3826 3.3448 3.6271 18 6 2.3067 1.4814 4.8666 19 6 3.5840 0.6473 4.9831 20 8 4.7168 1.5165 5.0428 21 6 5.9391 0.9311 5.1480 22 6 6.0457 -0.4514 5.1869 23 6 7.2881 -1.0450 5.2991 24 6 8.4275 -0.2608 5.3616 25 9 9.6424 -0.8427 5.4653 26 6 8.3230 1.1191 5.3175 27 6 7.0815 1.7154 5.2105 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6755 3.5170 -4.4435 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0114 2.5302 38 1 1.7328 4.0742 4.3576 39 1 1.3374 3.8097 2.6423 40 1 0.3896 2.9954 3.9100 41 1 1.4383 0.8240 4.9093 42 1 2.2627 2.1953 5.6891 43 1 3.6723 -0.0053 4.1145 44 1 3.5419 0.0427 5.8890 45 1 5.1574 -1.0634 5.1333 46 1 7.3710 -2.1212 5.3336 47 1 9.2126 1.7296 5.3668 48 1 7.0003 2.7918 5.1757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076748573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:33 Heat of formation + Delta-G solvation = -77.037237 kcal Electronic energy + Delta-G solvation = -29560.101864 eV Core-core repulsion = 25337.650193 eV Total energy + Delta-G solvation = -4222.451670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.92408 -40.24930 -39.33205 -37.64606 -36.46780 -35.14499 -32.78223 -31.52031 -30.68981 -30.08809 -29.00115 -28.67635 -26.56093 -24.87964 -23.34988 -23.01529 -22.67366 -22.21388 -20.90943 -18.62340 -18.25035 -17.47351 -16.93753 -16.72295 -16.34591 -16.03277 -15.66813 -15.62407 -15.18669 -14.89366 -14.76879 -14.39821 -14.14317 -13.87283 -13.76256 -13.66244 -13.35635 -13.18540 -12.91044 -12.67380 -12.59530 -12.40473 -12.18422 -11.99821 -11.79141 -11.65844 -11.49463 -11.22028 -11.15237 -10.91597 -10.85925 -10.80422 -10.70593 -10.49637 -10.09442 -9.58991 -9.36132 -8.85264 -8.40623 -8.20321 -8.17401 -7.61808 -6.01602 -4.05852 0.98911 1.09002 3.04068 3.32347 3.39159 3.41826 3.43058 3.48361 3.63667 4.15004 4.17916 4.47096 4.48976 4.58734 4.72815 4.81807 4.92029 5.02175 5.04938 5.13472 5.17550 5.25383 5.31440 5.33251 5.44647 5.50098 5.54636 5.60127 5.65598 5.70188 5.74445 5.75856 5.93301 5.99058 6.00900 6.08129 6.20347 6.29661 6.44062 6.54830 6.91444 7.07354 7.14867 7.30405 7.47044 7.58787 7.95474 8.26777 8.45967 8.94353 9.16287 9.59493 11.06463 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.003469 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.809646 B = 8068.955458 C =10322.927306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.507 3.493 14 O -0.520 6.520 15 C 0.033 3.967 16 N -0.517 5.517 17 C 0.024 3.976 18 C 0.055 3.945 19 C 0.063 3.937 20 O -0.289 6.289 21 C 0.131 3.869 22 C -0.186 4.186 23 C -0.112 4.112 24 C 0.050 3.950 25 F -0.145 7.145 26 C -0.112 4.112 27 C -0.123 4.123 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.800 -9.449 20.444 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.292 3.708 14 O -0.396 6.396 15 C -0.098 4.098 16 N -0.241 5.241 17 C -0.124 4.124 18 C -0.073 4.073 19 C -0.013 4.013 20 O -0.201 6.201 21 C 0.084 3.916 22 C -0.205 4.205 23 C -0.131 4.131 24 C 0.031 3.969 25 F -0.123 7.123 26 C -0.130 4.130 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.158 0.842 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.138 -8.336 20.168 21.853 hybrid contribution 0.327 -1.021 -0.360 1.131 sum -0.811 -9.357 19.809 21.923 Atomic orbital electron populations 1.22225 0.96907 1.01320 1.02242 1.21385 0.93384 0.84456 1.02509 1.48270 1.64161 1.13173 1.07740 1.19237 0.96199 0.93576 0.78050 1.21439 0.96940 1.31761 1.06145 0.92522 1.24916 0.97765 0.94909 0.96427 1.69931 1.35683 1.33548 1.14345 0.86530 0.84860 0.77644 0.78624 1.20687 1.21076 1.19833 1.20064 0.78895 0.87178 0.84634 1.90651 1.44403 1.17860 1.86696 1.22161 0.99997 0.96276 0.91349 1.61548 1.52637 1.08886 1.00993 1.22523 0.91829 0.93120 1.04893 1.22179 0.94156 0.97654 0.93327 1.22930 0.84721 0.92729 1.00893 1.86250 1.11674 1.35072 1.87113 1.19102 0.86145 0.91169 0.95136 1.21108 0.98320 0.93684 1.07413 1.20898 0.91045 1.00406 1.00772 1.17558 0.80356 0.91348 1.07635 1.91476 1.42060 1.84726 1.94069 1.20963 0.98441 0.92873 1.00762 1.20337 0.89120 1.00864 1.03826 0.93298 0.91962 0.92230 0.89934 0.92095 0.95146 0.93959 0.92774 0.88921 0.92630 0.91451 0.89008 0.96557 0.92407 0.89378 0.91802 0.91650 0.84659 0.84687 0.84168 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.49 2.46 -175.05 -0.43 -12.92 16 4 C 0.25 6.48 5.16 -5.19 -0.03 6.45 16 5 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.51 10.42 7.31 -10.99 -0.08 10.34 16 14 O -0.52 -13.06 13.96 5.55 0.08 -12.98 16 15 C 0.03 0.49 3.83 -4.97 -0.02 0.47 16 16 N -0.52 -7.42 4.38 -244.37 -1.07 -8.48 16 17 C 0.02 0.33 9.15 60.07 0.55 0.88 16 18 C 0.06 0.55 5.38 -3.83 -0.02 0.53 16 19 C 0.06 0.62 4.93 37.16 0.18 0.81 16 20 O -0.29 -3.78 10.08 -19.55 -0.20 -3.98 16 21 C 0.13 1.62 6.69 -39.23 -0.26 1.35 16 22 C -0.19 -1.96 9.04 -39.44 -0.36 -2.32 16 23 C -0.11 -1.18 10.02 -39.53 -0.40 -1.57 16 24 C 0.05 0.58 7.30 -39.42 -0.29 0.30 16 25 F -0.14 -1.76 17.27 2.25 0.04 -1.72 16 26 C -0.11 -1.23 10.02 -39.53 -0.40 -1.63 16 27 C -0.12 -1.46 9.98 -39.44 -0.39 -1.85 16 28 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.22 5.84 -51.93 -0.30 0.92 16 37 H 0.06 0.68 7.17 -51.93 -0.37 0.31 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.59 5.79 -51.93 -0.30 1.29 16 40 H 0.02 0.19 8.13 -51.93 -0.42 -0.24 16 41 H 0.06 0.45 8.00 -51.93 -0.42 0.03 16 42 H 0.09 0.82 7.94 -51.93 -0.41 0.41 16 43 H 0.06 0.64 6.17 -51.93 -0.32 0.31 16 44 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 45 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 46 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 48 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 397.06 15.07 5.98 5.98 Total: -1.00 -34.85 397.06 -8.74 -43.59 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.29 Total: -0.63 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.57 Total: -0.01 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -0.76 Total: -47.47 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.12 Total: -16.96 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.85 -8.74 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076748573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.450 kcal (2) G-P(sol) polarization free energy of solvation -34.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds