Wall clock time and date at job start Tue Mar 31 2020 21:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46502 * 109.47262 * 2 1 4 4 C 1.46501 * 119.99969 * 270.00429 * 3 2 1 5 5 C 1.50704 * 109.46832 * 269.99868 * 4 3 2 6 6 H 1.08001 * 119.99659 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99980 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00268 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00241 * 179.97438 * 7 5 4 10 10 H 1.48494 * 109.47241 * 89.99376 * 9 7 5 11 11 H 1.48501 * 109.47319 * 210.00112 * 9 7 5 12 12 H 1.48504 * 109.46771 * 329.99807 * 9 7 5 13 13 C 1.34770 * 119.99784 * 89.99881 * 3 2 1 14 14 O 1.21283 * 120.00157 * 179.97438 * 13 3 2 15 15 C 1.50700 * 120.00128 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.47232 * 180.02562 * 15 13 3 17 17 C 1.46901 * 111.00228 * 66.04069 * 16 15 13 18 18 C 1.46897 * 110.99908 * 190.00099 * 16 15 13 19 19 C 1.52997 * 109.47658 * 75.84267 * 18 16 15 20 20 O 1.42905 * 109.47027 * 64.93724 * 19 18 16 21 21 C 1.35940 * 117.00237 * 180.02562 * 20 19 18 22 22 C 1.38710 * 120.03040 * 0.27379 * 21 20 19 23 23 C 1.38151 * 119.97277 * 180.25469 * 22 21 20 24 24 C 1.38456 * 120.02833 * 359.46997 * 23 22 21 25 25 F 1.35097 * 119.97217 * 180.29769 * 24 23 22 26 26 C 1.38458 * 120.05765 * 0.27440 * 24 23 22 27 27 C 1.38146 * 120.03250 * 359.97438 * 26 24 23 28 28 H 1.08998 * 109.46693 * 300.00249 * 1 2 3 29 29 H 1.09007 * 109.46940 * 59.99933 * 1 2 3 30 30 H 1.08999 * 109.47067 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46861 * 240.00197 * 2 1 3 32 32 H 1.08994 * 109.47092 * 120.00685 * 2 1 3 33 33 H 1.09002 * 109.47010 * 29.99395 * 4 3 2 34 34 H 1.08996 * 109.47104 * 149.99894 * 4 3 2 35 35 H 0.96996 * 120.00004 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.47407 * 59.99407 * 15 13 3 37 37 H 1.09006 * 109.46908 * 299.99519 * 15 13 3 38 38 H 1.09002 * 109.47049 * 188.99013 * 17 16 15 39 39 H 1.08998 * 109.46650 * 308.98776 * 17 16 15 40 40 H 1.08996 * 109.46858 * 68.99193 * 17 16 15 41 41 H 1.08999 * 109.46862 * 315.83899 * 18 16 15 42 42 H 1.09002 * 109.47122 * 195.84481 * 18 16 15 43 43 H 1.09002 * 109.47202 * 304.94080 * 19 18 16 44 44 H 1.08994 * 109.47357 * 184.93294 * 19 18 16 45 45 H 1.08004 * 120.01534 * 0.02562 * 22 21 20 46 46 H 1.07994 * 119.98339 * 179.74768 * 23 22 21 47 47 H 1.08003 * 119.98226 * 179.97438 * 26 24 23 48 48 H 1.08001 * 120.01629 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8774 8 7 3.3494 3.1266 -3.6176 9 14 5.9138 2.0975 -3.4164 10 1 5.9777 0.8768 -4.2596 11 1 6.3928 3.2652 -4.1989 12 1 6.7737 1.9176 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3098 2.2061 3.5889 17 6 1.3826 3.3448 3.6271 18 6 2.3067 1.4814 4.8666 19 6 3.5840 0.6473 4.9831 20 8 4.7168 1.5165 5.0428 21 6 5.9391 0.9311 5.1480 22 6 6.0457 -0.4514 5.1869 23 6 7.2881 -1.0450 5.2991 24 6 8.4275 -0.2608 5.3616 25 9 9.6424 -0.8427 5.4653 26 6 8.3230 1.1191 5.3175 27 6 7.0815 1.7154 5.2105 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6755 3.5170 -4.4435 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0114 2.5302 38 1 1.7328 4.0742 4.3576 39 1 1.3374 3.8097 2.6423 40 1 0.3896 2.9954 3.9100 41 1 1.4383 0.8240 4.9093 42 1 2.2627 2.1953 5.6891 43 1 3.6723 -0.0053 4.1145 44 1 3.5419 0.0427 5.8890 45 1 5.1574 -1.0634 5.1333 46 1 7.3710 -2.1212 5.3336 47 1 9.2126 1.7296 5.3668 48 1 7.0003 2.7918 5.1757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076748573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:32 Heat of formation + Delta-G solvation = -99.885666 kcal Electronic energy + Delta-G solvation = -29561.092646 eV Core-core repulsion = 25337.650193 eV Total energy + Delta-G solvation = -4223.442453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.81626 -41.14135 -40.75163 -38.59765 -37.54798 -36.72246 -34.90142 -32.33590 -31.73399 -31.40827 -30.19916 -29.72547 -28.29712 -25.89668 -24.89382 -24.23221 -23.77073 -23.23280 -21.87758 -19.90388 -19.29195 -18.63745 -18.34336 -18.09735 -17.59285 -17.21128 -17.05295 -16.57988 -16.38814 -16.30692 -15.74042 -15.68283 -15.34057 -15.09202 -14.83423 -14.63171 -14.51538 -14.37009 -14.04800 -14.02789 -13.59691 -13.47277 -13.39068 -13.28440 -13.10907 -12.99832 -12.80384 -12.67351 -12.59476 -12.46657 -12.23921 -12.13924 -11.83772 -11.71507 -11.66619 -11.55911 -10.64210 -10.45191 -10.17399 -9.40772 -9.15222 -9.05172 -8.22453 -6.36833 0.17839 0.23063 1.34002 1.37515 1.47642 1.91061 2.23151 2.31226 2.41903 2.59460 3.02332 3.06942 3.33973 3.69390 3.73883 3.82737 3.96543 4.07702 4.14132 4.16246 4.25428 4.28688 4.35768 4.45476 4.46247 4.50035 4.57953 4.64849 4.70389 4.75094 4.86243 4.91290 4.95346 5.00026 5.06687 5.12479 5.16353 5.17434 5.23243 5.25829 5.39760 5.59320 5.73077 5.87617 5.99191 6.08092 6.15721 6.50697 6.71866 6.87628 7.30019 7.59033 8.84319 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008072 B = 0.003469 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3467.809646 B = 8068.955458 C =10322.927306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.280 1.280 12 H -0.276 1.276 13 C 0.494 3.506 14 O -0.580 6.580 15 C 0.051 3.949 16 N -0.548 5.548 17 C 0.031 3.969 18 C 0.057 3.943 19 C 0.055 3.945 20 O -0.315 6.315 21 C 0.115 3.885 22 C -0.184 4.184 23 C -0.111 4.111 24 C 0.031 3.969 25 F -0.151 7.151 26 C -0.115 4.115 27 C -0.143 4.143 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.020 0.980 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.100 0.900 45 H 0.163 0.837 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.253 -12.594 22.264 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.201 1.201 13 C 0.282 3.718 14 O -0.459 6.459 15 C -0.080 4.080 16 N -0.273 5.273 17 C -0.117 4.117 18 C -0.070 4.070 19 C -0.020 4.020 20 O -0.229 6.229 21 C 0.069 3.931 22 C -0.202 4.202 23 C -0.130 4.130 24 C 0.012 3.988 25 F -0.130 7.130 26 C -0.133 4.133 27 C -0.162 4.162 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.181 0.819 46 H 0.176 0.824 47 H 0.172 0.828 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.619 -11.538 22.011 24.905 hybrid contribution 0.423 -0.019 -0.897 0.992 sum -1.196 -11.557 21.114 24.100 Atomic orbital electron populations 1.22148 0.94535 1.03493 1.01585 1.21735 0.95305 0.81406 1.03820 1.48308 1.64343 1.15148 1.06182 1.18625 0.95015 0.91396 0.80569 1.21706 0.97993 1.31809 1.06361 0.93193 1.25806 1.02139 0.94501 0.96495 1.70047 1.37691 1.34281 1.14804 0.85490 0.79304 0.78325 0.78159 1.18579 1.20570 1.20137 1.21266 0.77346 0.86773 0.86379 1.90624 1.46917 1.20669 1.87722 1.22039 1.02367 0.95784 0.87793 1.61445 1.53444 1.09624 1.02801 1.22355 0.93505 0.93435 1.02421 1.22323 0.95574 0.98174 0.90924 1.23219 0.83526 0.92663 1.02620 1.86224 1.12545 1.36775 1.87324 1.19332 0.86047 0.92111 0.95592 1.21380 0.99323 0.93104 1.06392 1.21207 0.90569 1.01591 0.99602 1.17812 0.80628 0.91754 1.08590 1.91457 1.42495 1.84785 1.94225 1.21131 0.98751 0.93152 1.00309 1.20489 0.89750 1.01087 1.04861 0.92115 0.94514 0.88519 0.91227 0.88148 0.96154 0.98825 0.92444 0.86690 0.89235 0.91085 0.93399 0.93692 0.88783 0.88844 0.91669 0.88198 0.81936 0.82366 0.82832 0.84196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 10.24 71.98 0.74 -2.94 16 2 C 0.10 2.91 5.93 86.38 0.51 3.42 16 3 N -0.61 -25.61 2.46 -826.14 -2.03 -27.64 16 4 C 0.27 14.56 5.16 85.63 0.44 15.00 16 5 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 7 C 0.01 0.56 5.46 84.65 0.46 1.02 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.91 16 9 Si 0.96 46.17 29.54 68.60 2.03 48.19 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.49 20.49 7.31 87.66 0.64 21.13 16 14 O -0.58 -30.65 13.96 -3.04 -0.04 -30.70 16 15 C 0.05 1.35 3.83 85.56 0.33 1.67 16 16 N -0.55 -14.65 4.38 -927.06 -4.06 -18.70 16 17 C 0.03 0.83 9.15 127.69 1.17 2.00 16 18 C 0.06 0.92 5.38 86.30 0.46 1.39 16 19 C 0.05 0.88 4.93 71.98 0.35 1.23 16 20 O -0.32 -7.78 10.08 -92.88 -0.94 -8.71 16 21 C 0.12 2.71 6.69 22.49 0.15 2.86 16 22 C -0.18 -3.39 9.04 22.36 0.20 -3.19 16 23 C -0.11 -2.08 10.02 22.30 0.22 -1.85 16 24 C 0.03 0.70 7.30 22.37 0.16 0.86 16 25 F -0.15 -3.53 17.27 44.97 0.78 -2.76 16 26 C -0.11 -2.50 10.02 22.30 0.22 -2.27 16 27 C -0.14 -3.40 9.98 22.36 0.22 -3.17 16 28 H 0.06 1.26 7.22 -2.39 -0.02 1.24 16 29 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.07 2.21 8.07 -2.39 -0.02 2.19 16 32 H 0.10 2.14 6.44 -2.39 -0.02 2.12 16 33 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 34 H -0.01 -0.41 7.42 -2.39 -0.02 -0.42 16 35 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 36 H 0.12 2.55 5.84 -2.39 -0.01 2.53 16 37 H 0.09 1.79 7.17 -2.38 -0.02 1.77 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.73 5.79 -2.39 -0.01 1.71 16 40 H 0.04 0.92 8.13 -2.39 -0.02 0.90 16 41 H 0.09 0.89 8.00 -2.39 -0.02 0.87 16 42 H 0.09 1.43 7.94 -2.39 -0.02 1.41 16 43 H 0.07 1.02 6.17 -2.39 -0.01 1.01 16 44 H 0.10 0.92 7.67 -2.39 -0.02 0.90 16 45 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 46 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 47 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 48 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -82.02 397.06 3.52 -78.50 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.96 Total: 13.22 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.54 Total: 5.51 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -5.80 Total: -103.25 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.98 Total: -39.41 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.19 kcal Total: -82.02 3.52 -78.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076748573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.383 kcal (2) G-P(sol) polarization free energy of solvation -82.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds