Wall clock time and date at job start Tue Mar 31 2020 21:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00151 * 2 1 4 4 C 1.53004 * 109.47547 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46983 * 64.99960 * 4 3 2 6 6 C 1.46897 * 111.00054 * 66.05093 * 5 4 3 7 7 C 1.46899 * 110.99782 * 190.00242 * 5 4 3 8 8 H 1.09004 * 109.47018 * 302.16209 * 7 5 4 9 9 C 1.52997 * 109.47053 * 62.16174 * 7 5 4 10 10 C 1.50697 * 109.47094 * 182.16112 * 7 5 4 11 11 O 1.21296 * 120.00049 * 330.78401 * 10 7 5 12 12 N 1.34776 * 120.00215 * 150.77896 * 10 7 5 13 13 C 1.46504 * 119.99881 * 3.80676 * 12 10 7 14 14 C 1.50704 * 109.46624 * 273.75926 * 13 12 10 15 15 H 1.07998 * 120.00572 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99892 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00354 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46867 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47509 * 120.00074 * 18 16 14 21 21 H 1.48501 * 109.47429 * 240.00379 * 18 16 14 22 22 C 1.40026 * 120.00143 * 183.80030 * 12 10 7 23 23 C 1.38856 * 120.04430 * 172.76607 * 22 12 10 24 24 C 1.38115 * 119.95265 * 180.25420 * 23 22 12 25 25 C 1.38468 * 120.04598 * 359.47448 * 24 23 22 26 26 F 1.35106 * 119.95698 * 180.23355 * 25 24 23 27 27 C 1.38472 * 120.09101 * 0.50843 * 25 24 23 28 28 C 1.38114 * 120.04514 * 359.76425 * 27 25 24 29 29 H 1.08997 * 109.47602 * 300.00056 * 1 2 3 30 30 H 1.09003 * 109.47245 * 60.00317 * 1 2 3 31 31 H 1.09010 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46786 * 59.99748 * 3 2 1 33 33 H 1.09001 * 109.46913 * 299.99651 * 3 2 1 34 34 H 1.09002 * 109.46905 * 304.99962 * 4 3 2 35 35 H 1.09000 * 109.47182 * 185.00385 * 4 3 2 36 36 H 1.08999 * 109.47311 * 189.19543 * 6 5 4 37 37 H 1.09007 * 109.47015 * 309.18989 * 6 5 4 38 38 H 1.08990 * 109.47412 * 69.18872 * 6 5 4 39 39 H 1.08998 * 109.47249 * 64.11492 * 9 7 5 40 40 H 1.09010 * 109.46933 * 184.11207 * 9 7 5 41 41 H 1.09002 * 109.47476 * 304.11175 * 9 7 5 42 42 H 1.08996 * 109.46993 * 33.75553 * 13 12 10 43 43 H 1.08997 * 109.47042 * 153.75926 * 13 12 10 44 44 H 0.96996 * 120.00425 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.02165 * 359.97438 * 23 22 12 46 46 H 1.08002 * 119.97499 * 179.72491 * 24 23 22 47 47 H 1.07998 * 119.97967 * 179.75129 * 27 25 24 48 48 H 1.07999 * 120.02429 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 3.6970 1.4347 -2.4023 7 6 5.4036 0.2133 -1.1948 8 1 5.9886 1.1094 -0.9875 9 6 5.6314 -0.8130 -0.0832 10 6 5.8329 -0.3726 -2.5152 11 8 5.0324 -0.9721 -3.2016 12 7 7.1061 -0.2303 -2.9335 13 6 8.0930 0.4206 -2.0682 14 6 8.0382 1.9120 -2.2772 15 1 7.3380 2.3330 -2.9835 16 6 8.8812 2.7393 -1.5659 17 7 9.7336 2.2267 -0.7053 18 14 8.8138 4.5879 -1.8253 19 1 7.7777 4.9078 -2.8401 20 1 8.4732 5.2557 -0.5434 21 1 10.1363 5.0699 -2.2985 22 6 7.4858 -0.7048 -4.1950 23 6 8.7535 -0.4277 -4.6894 24 6 9.1241 -0.8921 -5.9361 25 6 8.2365 -1.6428 -6.6884 26 9 8.6026 -2.1002 -7.9058 27 6 6.9720 -1.9206 -6.1971 28 6 6.5954 -1.4533 -4.9532 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 3.8817 0.8888 -3.3274 37 1 2.6549 1.7531 -2.3703 38 1 4.3455 2.3097 -2.3610 39 1 5.1047 -1.7356 -0.3270 40 1 6.6982 -1.0172 0.0096 41 1 5.2538 -0.4173 0.8597 42 1 7.8700 0.1912 -1.0262 43 1 9.0899 0.0554 -2.3153 44 1 10.3269 2.8086 -0.2052 45 1 9.4475 0.1544 -4.1012 46 1 10.1084 -0.6731 -6.3229 47 1 6.2797 -2.5028 -6.7871 48 1 5.6089 -1.6697 -4.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077409050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:30 Heat of formation + Delta-G solvation = -66.918585 kcal Electronic energy + Delta-G solvation = -30675.290356 eV Core-core repulsion = 26453.277463 eV Total energy + Delta-G solvation = -4222.012893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.43370 -40.49939 -38.54437 -37.72116 -36.27317 -35.30086 -32.78585 -31.61436 -30.63099 -29.48436 -28.97377 -27.33406 -26.36928 -25.02023 -24.16946 -23.49991 -22.40180 -21.67015 -20.49785 -18.79661 -17.32772 -17.11559 -16.94753 -16.50263 -16.27453 -16.12742 -15.38587 -15.17190 -15.08237 -14.87300 -14.72423 -14.47384 -14.10808 -13.86001 -13.77652 -13.22137 -13.02410 -12.69611 -12.64806 -12.44795 -12.30984 -12.25730 -11.94632 -11.81151 -11.80981 -11.53505 -11.41316 -11.19180 -11.13062 -10.99095 -10.84579 -10.65354 -10.59223 -10.35830 -10.13947 -9.58115 -9.18097 -8.81071 -8.64422 -8.62508 -7.92882 -7.22821 -6.36969 -4.46431 1.58176 1.73719 3.05980 3.09429 3.19700 3.23611 3.45098 3.83949 4.14274 4.18654 4.26899 4.77234 4.88709 4.96322 5.03670 5.15334 5.27225 5.28819 5.30660 5.33473 5.37721 5.55058 5.58438 5.66417 5.69540 5.72486 5.78924 5.83596 5.89628 5.95422 6.00067 6.04794 6.24328 6.33400 6.37143 6.48016 6.59047 6.68846 6.74397 6.80074 6.97614 7.14281 7.16380 7.24494 7.37680 7.54947 7.67341 7.78995 7.99277 8.58449 8.73916 9.22183 10.68924 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008039 B = 0.004554 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.053539 B = 6146.301480 C = 8747.110465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.371 6.371 3 C 0.067 3.933 4 C 0.050 3.950 5 N -0.511 5.511 6 C 0.015 3.985 7 C 0.064 3.936 8 H 0.094 0.906 9 C -0.138 4.138 10 C 0.529 3.471 11 O -0.523 6.523 12 N -0.535 5.535 13 C 0.224 3.776 14 C -0.543 4.543 15 H 0.063 0.937 16 C 0.071 3.929 17 N -0.885 5.885 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.280 1.280 22 C 0.164 3.836 23 C -0.121 4.121 24 C -0.134 4.134 25 C 0.049 3.951 26 F -0.153 7.153 27 C -0.136 4.136 28 C -0.155 4.155 29 H 0.034 0.966 30 H 0.037 0.963 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.048 0.952 44 H 0.268 0.732 45 H 0.148 0.852 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -2.598 0.772 10.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.289 6.289 3 C -0.010 4.010 4 C -0.078 4.078 5 N -0.236 5.236 6 C -0.133 4.133 7 C -0.047 4.047 8 H 0.111 0.889 9 C -0.196 4.196 10 C 0.319 3.681 11 O -0.402 6.402 12 N -0.255 5.255 13 C 0.105 3.895 14 C -0.581 4.581 15 H 0.081 0.919 16 C -0.134 4.134 17 N -0.522 5.522 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.206 1.206 22 C 0.068 3.932 23 C -0.141 4.141 24 C -0.153 4.153 25 C 0.029 3.971 26 F -0.132 7.132 27 C -0.156 4.156 28 C -0.174 4.174 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.225 -3.436 0.560 10.801 hybrid contribution 0.632 2.195 -0.253 2.298 sum -9.593 -1.241 0.307 9.678 Atomic orbital electron populations 1.22696 0.82107 1.02440 0.99324 1.88038 1.18495 1.27204 1.95166 1.22597 0.93632 0.85137 0.99642 1.22232 0.93284 0.98542 0.93706 1.61766 1.15953 1.43396 1.02462 1.22552 1.00435 0.95331 0.95017 1.21681 0.89442 1.00494 0.93087 0.88885 1.21787 1.02190 0.98726 0.96869 1.20514 0.80894 0.79147 0.87570 1.90231 1.52688 1.41539 1.55745 1.46083 1.10974 1.53605 1.14797 1.19796 0.87344 0.92797 0.89520 1.21396 1.21531 0.90586 1.24636 0.91901 1.24901 0.94685 0.99228 0.94557 1.69915 1.21558 1.35826 1.24913 0.86471 0.78373 0.84672 0.78254 1.19606 1.20698 1.20568 1.18127 0.93841 0.95038 0.86215 1.20987 0.96161 1.01383 0.95610 1.20847 0.99746 0.99749 0.94958 1.17721 0.95220 1.02008 0.82180 1.91423 1.92198 1.87681 1.41904 1.21063 0.94696 1.02499 0.97325 1.22719 1.03508 0.97699 0.93505 0.94706 0.94472 0.89896 0.93296 0.93230 0.89265 0.93020 0.90210 0.91783 0.95417 0.91576 0.91352 0.91432 0.93283 0.93362 0.92263 0.83473 0.85173 0.85432 0.79515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.37 -5.05 10.65 -35.23 -0.38 -5.42 16 3 C 0.07 0.80 6.01 37.16 0.22 1.02 16 4 C 0.05 0.68 5.19 -3.82 -0.02 0.66 16 5 N -0.51 -8.37 4.34 -236.29 -1.03 -9.40 16 6 C 0.01 0.24 8.92 60.06 0.54 0.77 16 7 C 0.06 1.13 1.63 -68.87 -0.11 1.02 16 8 H 0.09 1.82 6.10 -51.93 -0.32 1.51 16 9 C -0.14 -2.16 8.99 37.16 0.33 -1.83 16 10 C 0.53 10.43 5.77 -10.99 -0.06 10.37 16 11 O -0.52 -10.82 11.55 5.54 0.06 -10.75 16 12 N -0.54 -10.92 2.69 -114.71 -0.31 -11.23 16 13 C 0.22 4.91 4.19 -5.19 -0.02 4.89 16 14 C -0.54 -12.99 8.36 -34.44 -0.29 -13.28 16 15 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.88 -22.53 13.29 55.43 0.74 -21.80 16 18 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 C 0.16 3.25 6.49 -83.66 -0.54 2.71 16 23 C -0.12 -2.26 9.15 -39.40 -0.36 -2.62 16 24 C -0.13 -2.24 10.02 -39.54 -0.40 -2.64 16 25 C 0.05 0.83 7.30 -39.41 -0.29 0.54 16 26 F -0.15 -2.52 17.27 2.25 0.04 -2.48 16 27 C -0.14 -2.29 10.02 -39.54 -0.40 -2.68 16 28 C -0.15 -2.88 9.04 -39.40 -0.36 -3.24 16 29 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.57 6.18 -51.93 -0.32 0.25 16 34 H 0.09 1.17 5.84 -51.93 -0.30 0.87 16 35 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 36 H 0.08 1.45 6.14 -51.93 -0.32 1.13 16 37 H 0.06 0.89 6.03 -51.93 -0.31 0.58 16 38 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.08 6.83 -51.92 -0.35 0.73 16 41 H 0.07 0.93 6.06 -51.93 -0.31 0.61 16 42 H 0.05 1.09 5.55 -51.93 -0.29 0.80 16 43 H 0.05 1.11 6.32 -51.93 -0.33 0.78 16 44 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 45 H 0.15 2.86 6.28 -52.49 -0.33 2.53 16 46 H 0.13 1.88 8.06 -52.49 -0.42 1.46 16 47 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 48 H 0.19 3.65 4.55 -56.15 -0.26 3.39 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -26.97 383.24 -7.64 -34.62 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.79 Total: 7.60 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -0.74 Total: -1.26 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: -0.60 Total: -42.42 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.31 Total: -16.18 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -26.97 -7.64 -34.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077409050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.302 kcal (2) G-P(sol) polarization free energy of solvation -26.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds