Wall clock time and date at job start Tue Mar 31 2020 21:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42897 * 114.00151 * 2 1 4 4 C 1.53004 * 109.47547 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46983 * 64.99960 * 4 3 2 6 6 C 1.46897 * 111.00054 * 66.05093 * 5 4 3 7 7 C 1.46899 * 110.99782 * 190.00242 * 5 4 3 8 8 H 1.09004 * 109.47018 * 302.16209 * 7 5 4 9 9 C 1.52997 * 109.47053 * 62.16174 * 7 5 4 10 10 C 1.50697 * 109.47094 * 182.16112 * 7 5 4 11 11 O 1.21296 * 120.00049 * 330.78401 * 10 7 5 12 12 N 1.34776 * 120.00215 * 150.77896 * 10 7 5 13 13 C 1.46504 * 119.99881 * 3.80676 * 12 10 7 14 14 C 1.50704 * 109.46624 * 273.75926 * 13 12 10 15 15 H 1.07998 * 120.00572 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99892 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00354 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46867 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47509 * 120.00074 * 18 16 14 21 21 H 1.48501 * 109.47429 * 240.00379 * 18 16 14 22 22 C 1.40026 * 120.00143 * 183.80030 * 12 10 7 23 23 C 1.38856 * 120.04430 * 172.76607 * 22 12 10 24 24 C 1.38115 * 119.95265 * 180.25420 * 23 22 12 25 25 C 1.38468 * 120.04598 * 359.47448 * 24 23 22 26 26 F 1.35106 * 119.95698 * 180.23355 * 25 24 23 27 27 C 1.38472 * 120.09101 * 0.50843 * 25 24 23 28 28 C 1.38114 * 120.04514 * 359.76425 * 27 25 24 29 29 H 1.08997 * 109.47602 * 300.00056 * 1 2 3 30 30 H 1.09003 * 109.47245 * 60.00317 * 1 2 3 31 31 H 1.09010 * 109.46922 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46786 * 59.99748 * 3 2 1 33 33 H 1.09001 * 109.46913 * 299.99651 * 3 2 1 34 34 H 1.09002 * 109.46905 * 304.99962 * 4 3 2 35 35 H 1.09000 * 109.47182 * 185.00385 * 4 3 2 36 36 H 1.08999 * 109.47311 * 189.19543 * 6 5 4 37 37 H 1.09007 * 109.47015 * 309.18989 * 6 5 4 38 38 H 1.08990 * 109.47412 * 69.18872 * 6 5 4 39 39 H 1.08998 * 109.47249 * 64.11492 * 9 7 5 40 40 H 1.09010 * 109.46933 * 184.11207 * 9 7 5 41 41 H 1.09002 * 109.47476 * 304.11175 * 9 7 5 42 42 H 1.08996 * 109.46993 * 33.75553 * 13 12 10 43 43 H 1.08997 * 109.47042 * 153.75926 * 13 12 10 44 44 H 0.96996 * 120.00425 * 179.97438 * 17 16 14 45 45 H 1.08000 * 120.02165 * 359.97438 * 23 22 12 46 46 H 1.08002 * 119.97499 * 179.72491 * 24 23 22 47 47 H 1.07998 * 119.97967 * 179.75129 * 27 25 24 48 48 H 1.07999 * 120.02429 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 3.6970 1.4347 -2.4023 7 6 5.4036 0.2133 -1.1948 8 1 5.9886 1.1094 -0.9875 9 6 5.6314 -0.8130 -0.0832 10 6 5.8329 -0.3726 -2.5152 11 8 5.0324 -0.9721 -3.2016 12 7 7.1061 -0.2303 -2.9335 13 6 8.0930 0.4206 -2.0682 14 6 8.0382 1.9120 -2.2772 15 1 7.3380 2.3330 -2.9835 16 6 8.8812 2.7393 -1.5659 17 7 9.7336 2.2267 -0.7053 18 14 8.8138 4.5879 -1.8253 19 1 7.7777 4.9078 -2.8401 20 1 8.4732 5.2557 -0.5434 21 1 10.1363 5.0699 -2.2985 22 6 7.4858 -0.7048 -4.1950 23 6 8.7535 -0.4277 -4.6894 24 6 9.1241 -0.8921 -5.9361 25 6 8.2365 -1.6428 -6.6884 26 9 8.6026 -2.1002 -7.9058 27 6 6.9720 -1.9206 -6.1971 28 6 6.5954 -1.4533 -4.9532 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8508 0.5685 0.8427 35 1 3.9784 2.1766 0.0903 36 1 3.8817 0.8888 -3.3274 37 1 2.6549 1.7531 -2.3703 38 1 4.3455 2.3097 -2.3610 39 1 5.1047 -1.7356 -0.3270 40 1 6.6982 -1.0172 0.0096 41 1 5.2538 -0.4173 0.8597 42 1 7.8700 0.1912 -1.0262 43 1 9.0899 0.0554 -2.3153 44 1 10.3269 2.8086 -0.2052 45 1 9.4475 0.1544 -4.1012 46 1 10.1084 -0.6731 -6.3229 47 1 6.2797 -2.5028 -6.7871 48 1 5.6089 -1.6697 -4.5705 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077409050.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:29 Heat of formation + Delta-G solvation = -81.859854 kcal Electronic energy + Delta-G solvation = -30675.938258 eV Core-core repulsion = 26453.277463 eV Total energy + Delta-G solvation = -4222.660795 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.78345 -42.01776 -39.81804 -38.89088 -37.50065 -36.93740 -34.62345 -32.89954 -32.05563 -30.58752 -30.48888 -29.05697 -27.24516 -26.21435 -25.64880 -25.09880 -23.86328 -23.01382 -21.75916 -20.26883 -18.83454 -18.72261 -18.57828 -17.79945 -17.48224 -17.22041 -16.72221 -16.54070 -16.48187 -16.21780 -16.20973 -15.74239 -15.38652 -15.22350 -15.08794 -14.64517 -14.47818 -14.24635 -14.05944 -13.81776 -13.63474 -13.57701 -13.39353 -13.24972 -12.98679 -12.87012 -12.82207 -12.63792 -12.43510 -12.39123 -12.30615 -12.21318 -11.96017 -11.88544 -11.63184 -10.81956 -10.67213 -10.46372 -10.18161 -10.04072 -9.24066 -8.77539 -8.24184 -6.40134 0.13468 0.32004 1.36644 1.41721 1.49294 1.56976 1.94356 2.36462 2.75386 2.88788 3.01819 3.05158 3.36482 3.44412 3.90258 3.97043 4.02705 4.13479 4.22291 4.30521 4.32612 4.39781 4.42763 4.46487 4.52582 4.55578 4.61251 4.63164 4.68453 4.73754 4.78518 4.87732 4.92458 4.96675 5.02817 5.05640 5.08120 5.23373 5.26931 5.29610 5.35501 5.61568 5.68820 5.92015 5.93148 6.05305 6.16444 6.37334 6.42358 6.70931 7.15439 7.31495 8.79821 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008039 B = 0.004554 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3482.053539 B = 6146.301480 C = 8747.110465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.070 3.930 4 C 0.046 3.954 5 N -0.517 5.517 6 C 0.021 3.979 7 C 0.069 3.931 8 H 0.072 0.928 9 C -0.131 4.131 10 C 0.524 3.476 11 O -0.536 6.536 12 N -0.540 5.540 13 C 0.240 3.760 14 C -0.543 4.543 15 H 0.048 0.952 16 C 0.035 3.965 17 N -0.910 5.910 18 Si 0.948 3.052 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.279 1.279 22 C 0.140 3.860 23 C -0.131 4.131 24 C -0.125 4.125 25 C 0.051 3.949 26 F -0.147 7.147 27 C -0.128 4.128 28 C -0.162 4.162 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.093 0.907 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.087 0.913 38 H 0.017 0.983 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.036 0.964 44 H 0.270 0.730 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.717 -2.246 0.623 10.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.321 6.321 3 C -0.007 4.007 4 C -0.081 4.081 5 N -0.243 5.243 6 C -0.127 4.127 7 C -0.042 4.042 8 H 0.090 0.910 9 C -0.188 4.188 10 C 0.315 3.685 11 O -0.415 6.415 12 N -0.260 5.260 13 C 0.120 3.880 14 C -0.581 4.581 15 H 0.066 0.934 16 C -0.167 4.167 17 N -0.548 5.548 18 Si 0.774 3.226 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.204 1.204 22 C 0.044 3.956 23 C -0.152 4.152 24 C -0.145 4.145 25 C 0.031 3.969 26 F -0.125 7.125 27 C -0.147 4.147 28 C -0.181 4.181 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.036 0.964 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.079 0.921 45 H 0.153 0.847 46 H 0.173 0.827 47 H 0.172 0.828 48 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -11.145 -3.089 0.405 11.572 hybrid contribution 0.882 2.027 -0.278 2.228 sum -10.262 -1.062 0.127 10.318 Atomic orbital electron populations 1.22857 0.80331 1.03316 1.00453 1.87984 1.20553 1.28122 1.95428 1.22611 0.92129 0.84959 1.01008 1.22371 0.94812 0.98621 0.92295 1.61820 1.14681 1.44044 1.03745 1.22463 1.01639 0.94435 0.94124 1.21609 0.90174 0.99926 0.92509 0.91001 1.21747 1.01876 0.98097 0.97129 1.20901 0.80522 0.78926 0.88154 1.90224 1.52809 1.42194 1.56262 1.46043 1.10999 1.53834 1.15111 1.19468 0.87101 0.91888 0.89510 1.21432 1.20987 0.91638 1.24052 0.93388 1.25467 0.94429 1.02458 0.94372 1.69982 1.22195 1.37005 1.25646 0.85649 0.78044 0.80739 0.78155 1.20004 1.19976 1.20425 1.18418 0.94732 0.96086 0.86335 1.20931 0.95695 1.02074 0.96466 1.21060 1.00802 0.98644 0.93946 1.17748 0.95189 1.01669 0.82307 1.91445 1.92126 1.87537 1.41432 1.21286 0.95135 1.01711 0.96579 1.22624 1.03022 0.98192 0.94285 0.92887 0.93956 0.89277 0.90690 0.92971 0.88868 0.92508 0.92608 0.89405 0.96437 0.91847 0.91923 0.89301 0.93708 0.94626 0.92055 0.84718 0.82685 0.82813 0.80382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -10.26 10.65 -148.98 -1.59 -11.85 16 3 C 0.07 1.52 6.01 71.98 0.43 1.96 16 4 C 0.05 1.20 5.19 86.30 0.45 1.65 16 5 N -0.52 -16.86 4.34 -901.48 -3.92 -20.77 16 6 C 0.02 0.70 8.92 127.69 1.14 1.84 16 7 C 0.07 2.48 1.63 44.17 0.07 2.56 16 8 H 0.07 2.90 6.10 -2.38 -0.01 2.88 16 9 C -0.13 -4.11 8.99 71.98 0.65 -3.46 16 10 C 0.52 21.24 5.77 87.66 0.51 21.74 16 11 O -0.54 -22.64 11.55 -3.08 -0.04 -22.67 16 12 N -0.54 -22.74 2.69 -635.23 -1.71 -24.45 16 13 C 0.24 10.86 4.19 85.63 0.36 11.22 16 14 C -0.54 -26.51 8.36 25.60 0.21 -26.30 16 15 H 0.05 2.46 7.81 -2.91 -0.02 2.43 16 16 C 0.03 1.70 5.46 84.65 0.46 2.16 16 17 N -0.91 -46.66 13.29 21.45 0.28 -46.37 16 18 Si 0.95 39.71 29.54 68.60 2.03 41.73 16 19 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 21 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 22 C 0.14 5.64 6.49 38.13 0.25 5.89 16 23 C -0.13 -4.94 9.15 22.39 0.20 -4.73 16 24 C -0.13 -4.06 10.02 22.30 0.22 -3.83 16 25 C 0.05 1.63 7.30 22.38 0.16 1.79 16 26 F -0.15 -4.46 17.27 44.97 0.78 -3.69 16 27 C -0.13 -4.10 10.02 22.30 0.22 -3.88 16 28 C -0.16 -6.02 9.04 22.39 0.20 -5.82 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.10 6.18 -2.39 -0.01 1.09 16 34 H 0.09 2.32 5.84 -2.39 -0.01 2.31 16 35 H 0.06 1.42 8.12 -2.39 -0.02 1.40 16 36 H 0.06 2.07 6.14 -2.39 -0.01 2.05 16 37 H 0.09 2.37 6.03 -2.38 -0.01 2.35 16 38 H 0.02 0.58 8.13 -2.39 -0.02 0.57 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 2.01 6.83 -2.38 -0.02 2.00 16 41 H 0.09 2.37 6.06 -2.39 -0.01 2.35 16 42 H 0.05 2.06 5.55 -2.39 -0.01 2.05 16 43 H 0.04 1.70 6.32 -2.39 -0.02 1.68 16 44 H 0.27 13.15 8.31 -92.71 -0.77 12.38 16 45 H 0.14 5.39 6.28 -2.91 -0.02 5.37 16 46 H 0.16 4.17 8.06 -2.91 -0.02 4.14 16 47 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 48 H 0.18 7.04 4.55 -60.90 -0.28 6.77 16 Total: -1.00 -57.23 383.24 3.35 -53.88 By element: Atomic # 1 Polarization: 28.97 SS G_CDS: 0.72 Total: 29.69 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 6.79 Total: 4.50 kcal Atomic # 7 Polarization: -86.26 SS G_CDS: -5.34 Total: -91.60 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.62 Total: -34.52 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.69 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.73 kcal Total: -57.23 3.35 -53.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077409050.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.975 kcal (2) G-P(sol) polarization free energy of solvation -57.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds