Wall clock time and date at job start Tue Mar 31 2020 21:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00113 * 2 1 4 4 C 1.53005 * 109.47375 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.46615 * 65.00006 * 4 3 2 6 6 C 1.46896 * 111.00211 * 66.04794 * 5 4 3 7 7 C 1.46903 * 110.99296 * 190.00171 * 5 4 3 8 8 H 1.08991 * 109.47283 * 55.00381 * 7 5 4 9 9 C 1.53001 * 109.47230 * 294.99689 * 7 5 4 10 10 C 1.50709 * 109.46819 * 175.00251 * 7 5 4 11 11 O 1.21288 * 119.99759 * 11.38642 * 10 7 5 12 12 N 1.34775 * 119.99620 * 191.39231 * 10 7 5 13 13 C 1.46496 * 120.00606 * 4.64081 * 12 10 7 14 14 C 1.50696 * 109.47305 * 95.66194 * 13 12 10 15 15 H 1.08003 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99958 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99962 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00288 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47400 * 89.99631 * 18 16 14 20 20 H 1.48496 * 109.47418 * 210.00107 * 18 16 14 21 21 H 1.48501 * 109.46975 * 330.00108 * 18 16 14 22 22 C 1.40029 * 119.99479 * 184.63849 * 12 10 7 23 23 C 1.38851 * 120.04876 * 352.55355 * 22 12 10 24 24 C 1.38112 * 119.95713 * 179.76553 * 23 22 12 25 25 C 1.38472 * 120.04509 * 0.51262 * 24 23 22 26 26 F 1.35102 * 119.95722 * 179.72148 * 25 24 23 27 27 C 1.38480 * 120.08943 * 359.74039 * 25 24 23 28 28 C 1.38115 * 120.04256 * 0.02562 * 27 25 24 29 29 H 1.09006 * 109.47295 * 59.99784 * 1 2 3 30 30 H 1.08994 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47226 * 300.00211 * 1 2 3 32 32 H 1.09004 * 109.47140 * 59.99792 * 3 2 1 33 33 H 1.09005 * 109.47478 * 300.00302 * 3 2 1 34 34 H 1.08992 * 109.46698 * 305.00306 * 4 3 2 35 35 H 1.08998 * 109.46959 * 184.99881 * 4 3 2 36 36 H 1.09000 * 109.47446 * 183.94579 * 6 5 4 37 37 H 1.08997 * 109.47474 * 303.95173 * 6 5 4 38 38 H 1.09003 * 109.46907 * 63.95194 * 6 5 4 39 39 H 1.09002 * 109.47013 * 175.20789 * 9 7 5 40 40 H 1.09000 * 109.47358 * 295.20774 * 9 7 5 41 41 H 1.08999 * 109.47210 * 55.20673 * 9 7 5 42 42 H 1.09001 * 109.47203 * 215.66523 * 13 12 10 43 43 H 1.09005 * 109.46569 * 335.66606 * 13 12 10 44 44 H 0.97002 * 119.99741 * 180.02562 * 17 16 14 45 45 H 1.08005 * 120.02346 * 0.02562 * 23 22 12 46 46 H 1.08000 * 119.97800 * 180.23402 * 24 23 22 47 47 H 1.07995 * 119.97816 * 179.97438 * 27 25 24 48 48 H 1.07997 * 120.01568 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9778 0.5623 -1.2543 6 6 3.6968 1.4347 -2.4023 7 6 5.4035 0.2133 -1.1948 8 1 5.5871 -0.4178 -0.3254 9 6 6.2372 1.4913 -1.0825 10 6 5.7912 -0.5309 -2.4467 11 8 5.0286 -0.5710 -3.3890 12 7 6.9852 -1.1519 -2.5189 13 6 7.8631 -1.1904 -1.3468 14 6 7.6548 -2.4858 -0.6055 15 1 6.9402 -3.2084 -0.9712 16 6 8.3764 -2.7485 0.5395 17 7 8.1950 -3.8793 1.1862 18 14 9.6118 -1.4985 1.1725 19 1 8.9363 -0.5659 2.1102 20 1 10.7104 -2.2030 1.8807 21 1 10.1707 -0.7325 0.0296 22 6 7.3865 -1.7603 -3.7146 23 6 6.4974 -1.8606 -4.7763 24 6 6.8968 -2.4568 -5.9564 25 6 8.1796 -2.9639 -6.0775 26 9 8.5666 -3.5517 -7.2307 27 6 9.0663 -2.8696 -5.0180 28 6 8.6723 -2.2698 -3.8379 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8465 -0.8900 34 1 3.8507 0.5685 0.8426 35 1 3.9784 2.1766 0.0902 36 1 3.9697 0.9213 -3.3243 37 1 2.6345 1.6778 -2.4225 38 1 4.2778 2.3525 -2.3119 39 1 7.2874 1.2298 -0.9528 40 1 6.1195 2.0829 -1.9904 41 1 5.8986 2.0718 -0.2243 42 1 8.9021 -1.1188 -1.6685 43 1 7.6278 -0.3535 -0.6891 44 1 8.7025 -4.0639 1.9920 45 1 5.4954 -1.4689 -4.6809 46 1 6.2066 -2.5316 -6.7837 47 1 10.0662 -3.2660 -5.1142 48 1 9.3640 -2.1969 -3.0117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077409051.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:33 Heat of formation + Delta-G solvation = -70.580066 kcal Electronic energy + Delta-G solvation = -30635.916574 eV Core-core repulsion = 26413.744907 eV Total energy + Delta-G solvation = -4222.171667 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.78487 -42.10892 -39.92371 -38.89909 -37.62242 -37.04732 -34.60163 -32.82879 -32.07640 -30.79223 -30.02352 -29.35500 -27.38162 -26.87607 -25.40411 -24.92628 -23.82364 -22.99617 -21.63898 -20.30101 -19.15559 -18.76604 -18.61923 -17.83733 -17.43379 -17.26423 -16.73141 -16.58886 -16.38093 -16.29401 -16.20153 -15.70700 -15.40740 -15.26646 -15.09117 -14.65256 -14.61310 -14.46919 -14.11077 -13.90169 -13.81635 -13.63247 -13.51053 -13.09670 -13.01695 -12.87275 -12.75345 -12.66669 -12.40178 -12.29364 -12.17231 -12.09400 -11.96649 -11.73538 -11.70511 -10.84108 -10.79450 -10.48657 -10.09640 -10.02647 -9.11788 -8.72609 -8.30298 -6.40289 0.13988 0.32687 1.39963 1.41976 1.50641 1.55090 1.88847 2.33468 2.75597 2.93487 3.02360 3.02899 3.34559 3.41366 3.88935 3.93078 3.97512 4.09587 4.23176 4.25136 4.29377 4.35948 4.40304 4.43680 4.46704 4.54137 4.57972 4.61974 4.65277 4.70183 4.73841 4.77536 4.86035 4.89451 4.94170 5.04339 5.13052 5.20288 5.22792 5.29391 5.36937 5.42764 5.63265 5.97695 6.10275 6.14962 6.17845 6.43794 6.47702 6.65874 7.10426 7.25079 8.86359 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008164 B = 0.004496 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.921835 B = 6226.499704 C = 8560.102800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.066 3.934 4 C 0.051 3.949 5 N -0.532 5.532 6 C 0.006 3.994 7 C 0.071 3.929 8 H 0.100 0.900 9 C -0.182 4.182 10 C 0.524 3.476 11 O -0.531 6.531 12 N -0.534 5.534 13 C 0.202 3.798 14 C -0.542 4.542 15 H 0.023 0.977 16 C 0.023 3.977 17 N -0.940 5.940 18 Si 0.935 3.065 19 H -0.255 1.255 20 H -0.286 1.286 21 H -0.231 1.231 22 C 0.143 3.857 23 C -0.162 4.162 24 C -0.130 4.130 25 C 0.050 3.950 26 F -0.147 7.147 27 C -0.127 4.127 28 C -0.131 4.131 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.071 0.929 44 H 0.269 0.731 45 H 0.181 0.819 46 H 0.153 0.847 47 H 0.157 0.843 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.686 15.106 -4.491 16.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.011 4.011 4 C -0.076 4.076 5 N -0.256 5.256 6 C -0.142 4.142 7 C -0.041 4.041 8 H 0.118 0.882 9 C -0.240 4.240 10 C 0.315 3.685 11 O -0.411 6.411 12 N -0.253 5.253 13 C 0.081 3.919 14 C -0.581 4.581 15 H 0.041 0.959 16 C -0.176 4.176 17 N -0.579 5.579 18 Si 0.757 3.243 19 H -0.179 1.179 20 H -0.212 1.212 21 H -0.154 1.154 22 C 0.047 3.953 23 C -0.182 4.182 24 C -0.149 4.149 25 C 0.030 3.970 26 F -0.126 7.126 27 C -0.146 4.146 28 C -0.151 4.151 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.055 0.945 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.197 0.803 46 H 0.171 0.829 47 H 0.175 0.825 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.209 14.410 -4.835 16.419 hybrid contribution 0.829 0.186 0.584 1.031 sum -5.380 14.596 -4.251 16.126 Atomic orbital electron populations 1.22844 0.80326 1.03104 1.00624 1.88020 1.20677 1.28817 1.95453 1.22694 0.92539 0.84671 1.01160 1.22306 0.94619 0.99062 0.91658 1.61812 1.14044 1.45478 1.04268 1.22841 1.01317 0.94905 0.95087 1.21543 0.89692 0.97468 0.95356 0.88228 1.22500 1.00984 0.96447 1.04090 1.21023 0.79554 0.78348 0.89570 1.90123 1.50352 1.61529 1.39115 1.45671 1.18627 1.49854 1.11191 1.20122 0.91166 0.97584 0.83004 1.21301 1.23890 1.02943 1.09936 0.95910 1.25783 0.98513 0.97289 0.96028 1.70065 1.42786 1.26161 1.18865 0.85901 0.78705 0.79362 0.80361 1.17879 1.21206 1.15406 1.18354 0.94213 0.96233 0.86500 1.22637 1.02970 1.00958 0.91588 1.21286 0.94914 0.99417 0.99302 1.17777 0.94878 1.01234 0.83141 1.91441 1.91599 1.82251 1.47301 1.21081 1.00947 1.00916 0.91627 1.20928 0.95124 1.00517 0.98550 0.93501 0.89889 0.92782 0.90809 0.92366 0.90953 0.90413 0.89798 0.91038 0.94453 0.90657 0.91010 0.88836 0.92708 0.91170 0.92145 0.80332 0.82938 0.82531 0.84228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.54 10.65 -148.98 -1.59 -13.13 16 3 C 0.07 1.41 6.00 71.98 0.43 1.84 16 4 C 0.05 1.21 4.79 86.31 0.41 1.62 16 5 N -0.53 -16.06 4.57 -901.47 -4.12 -20.17 16 6 C 0.01 0.15 8.58 127.69 1.10 1.24 16 7 C 0.07 2.32 1.91 44.17 0.08 2.40 16 8 H 0.10 3.74 7.31 -2.39 -0.02 3.72 16 9 C -0.18 -4.43 8.13 71.98 0.59 -3.85 16 10 C 0.52 20.11 6.76 87.66 0.59 20.70 16 11 O -0.53 -21.24 9.91 -3.05 -0.03 -21.27 16 12 N -0.53 -21.47 2.69 -635.24 -1.71 -23.18 16 13 C 0.20 8.26 3.25 85.63 0.28 8.54 16 14 C -0.54 -28.42 9.91 25.60 0.25 -28.17 16 15 H 0.02 1.43 8.06 -2.91 -0.02 1.40 16 16 C 0.02 1.23 5.47 84.65 0.46 1.69 16 17 N -0.94 -55.25 13.96 21.45 0.30 -54.95 16 18 Si 0.94 37.45 27.47 68.60 1.88 39.34 16 19 H -0.25 -9.52 7.11 99.48 0.71 -8.82 16 20 H -0.29 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.23 -8.02 6.54 99.48 0.65 -7.37 16 22 C 0.14 5.63 6.46 38.12 0.25 5.88 16 23 C -0.16 -6.03 9.04 22.39 0.20 -5.83 16 24 C -0.13 -4.21 10.02 22.30 0.22 -3.99 16 25 C 0.05 1.61 7.30 22.38 0.16 1.77 16 26 F -0.15 -4.54 17.27 44.97 0.78 -3.76 16 27 C -0.13 -4.05 10.02 22.30 0.22 -3.83 16 28 C -0.13 -4.76 9.25 22.39 0.21 -4.56 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.12 6.26 -2.38 -0.01 1.10 16 34 H 0.07 1.92 8.00 -2.39 -0.02 1.90 16 35 H 0.08 1.39 6.83 -2.39 -0.02 1.37 16 36 H 0.08 2.67 5.06 -2.39 -0.01 2.66 16 37 H 0.07 1.67 6.21 -2.39 -0.01 1.66 16 38 H 0.04 0.82 6.39 -2.39 -0.02 0.81 16 39 H 0.07 1.87 5.86 -2.39 -0.01 1.85 16 40 H 0.07 1.63 6.66 -2.39 -0.02 1.62 16 41 H 0.09 1.81 6.53 -2.39 -0.02 1.79 16 42 H 0.06 2.12 5.31 -2.39 -0.01 2.10 16 43 H 0.07 2.57 3.63 -2.38 -0.01 2.56 16 44 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 45 H 0.18 7.00 4.55 -60.88 -0.28 6.72 16 46 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 47 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 48 H 0.14 5.06 6.13 -2.91 -0.02 5.04 16 Total: -1.00 -67.18 374.95 2.90 -64.28 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.67 Total: 35.61 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 6.71 Total: -2.75 kcal Atomic # 7 Polarization: -92.78 SS G_CDS: -5.53 Total: -98.31 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.62 Total: -34.40 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.78 Total: -3.76 kcal Atomic # 14 Polarization: 37.45 SS G_CDS: 1.88 Total: 39.34 kcal Total: -67.18 2.90 -64.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077409051.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.303 kcal (2) G-P(sol) polarization free energy of solvation -67.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds