Wall clock time and date at job start Tue Mar 31 2020 21:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00017 * 2 1 4 4 C 1.52999 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47181 * 59.99683 * 4 3 2 6 6 C 1.53000 * 109.47536 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47188 * 294.83800 * 6 4 3 8 8 O 1.42897 * 109.46918 * 185.18983 * 7 6 4 9 9 N 1.46908 * 109.46948 * 299.99829 * 4 3 2 10 10 C 1.46897 * 110.99583 * 153.73936 * 9 4 3 11 11 C 1.50705 * 109.46875 * 179.73640 * 10 9 4 12 12 C 1.38281 * 119.92864 * 89.99819 * 11 10 9 13 13 C 1.38100 * 120.07893 * 179.70354 * 12 11 10 14 14 C 1.38916 * 119.92230 * 0.27502 * 13 12 11 15 15 N 1.39677 * 120.07516 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99773 * 0.02562 * 15 14 13 17 17 C 1.46492 * 119.99731 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.47547 * 90.00360 * 17 15 14 19 19 H 1.08004 * 119.99688 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00385 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47180 * 89.99688 * 22 20 18 24 24 H 1.48503 * 109.47253 * 209.99489 * 22 20 18 25 25 H 1.48498 * 109.47072 * 329.99345 * 22 20 18 26 26 C 1.38912 * 119.85246 * 0.02562 * 14 13 12 27 27 C 1.38112 * 119.92206 * 359.97438 * 26 14 13 28 28 H 1.09007 * 109.47135 * 59.99966 * 1 2 3 29 29 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47586 * 300.00311 * 1 2 3 31 31 H 1.09004 * 109.47286 * 59.99578 * 3 2 1 32 32 H 1.09006 * 109.47232 * 299.99853 * 3 2 1 33 33 H 1.09006 * 109.46621 * 54.84043 * 6 4 3 34 34 H 1.09003 * 109.47118 * 174.83014 * 6 4 3 35 35 H 1.08991 * 109.46965 * 305.19247 * 7 6 4 36 36 H 1.08996 * 109.46812 * 65.19254 * 7 6 4 37 37 H 0.96708 * 113.99817 * 179.97438 * 8 7 6 38 38 H 1.00893 * 110.99866 * 277.69081 * 9 4 3 39 39 H 1.08999 * 109.47387 * 59.73683 * 10 9 4 40 40 H 1.08997 * 109.47818 * 299.73536 * 10 9 4 41 41 H 1.08007 * 119.95856 * 359.97438 * 12 11 10 42 42 H 1.07999 * 120.04048 * 180.30022 * 13 12 11 43 43 H 1.08995 * 109.47090 * 90.00016 * 16 15 14 44 44 H 1.09001 * 109.46896 * 210.00162 * 16 15 14 45 45 H 1.09004 * 109.47166 * 329.99536 * 16 15 14 46 46 H 1.09004 * 109.46777 * 209.99676 * 17 15 14 47 47 H 1.08994 * 109.47645 * 329.99625 * 17 15 14 48 48 H 0.96997 * 119.99670 * 180.02562 * 21 20 18 49 49 H 1.07999 * 120.04022 * 180.02562 * 26 14 13 50 50 H 1.07997 * 119.96090 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1616 1.4702 -0.8891 6 6 4.0865 3.4307 0.0000 7 6 3.6115 4.0632 -1.3096 8 8 4.0389 5.4258 -1.3630 9 7 4.3063 1.3072 1.2005 10 6 5.6970 0.8926 0.9725 11 6 6.2427 0.2550 2.2243 12 6 6.1111 -1.1078 2.4181 13 6 6.6154 -1.6962 3.5612 14 6 7.2506 -0.9165 4.5196 15 7 7.7614 -1.5082 5.6771 16 6 7.6281 -2.9527 5.8813 17 6 8.4303 -0.6842 6.6869 18 6 7.4160 -0.1944 7.6880 19 1 6.3768 -0.4690 7.5824 20 6 7.8143 0.6052 8.7382 21 7 9.0797 0.9401 8.8665 22 14 6.5569 1.2129 9.9787 23 1 6.4457 0.2348 11.0906 24 1 6.9885 2.5277 10.5175 25 1 5.2370 1.3594 9.3144 26 6 7.3756 0.4532 4.3246 27 6 6.8689 1.0351 3.1791 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8030 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.5912 3.9183 0.8397 34 1 5.1655 3.5545 0.0931 35 1 4.0351 3.5163 -2.1518 36 1 2.5235 4.0215 -1.3595 37 1 3.7726 5.8903 -2.1682 38 1 4.2381 1.9205 1.9987 39 1 6.2989 1.7646 0.7168 40 1 5.7325 0.1740 0.1537 41 1 5.6171 -1.7134 1.6727 42 1 6.5166 -2.7613 3.7097 43 1 8.4946 -3.4609 5.4584 44 1 7.5677 -3.1647 6.9488 45 1 6.7226 -3.3073 5.3888 46 1 9.1872 -1.2792 7.1980 47 1 8.9049 0.1695 6.2031 48 1 9.3600 1.5024 9.6056 49 1 7.8691 1.0622 5.0675 50 1 6.9661 2.0999 3.0267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077461921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:06 Heat of formation + Delta-G solvation = -24.255337 kcal Electronic energy + Delta-G solvation = -26540.677304 eV Core-core repulsion = 22886.727604 eV Total energy + Delta-G solvation = -3653.949699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.10864 -38.25807 -36.72306 -35.55686 -32.89836 -32.24975 -30.38288 -29.50811 -29.28051 -28.39329 -27.75431 -25.66663 -24.15252 -23.38147 -22.11296 -21.43347 -20.96220 -19.52547 -17.90024 -16.82159 -16.52870 -16.36187 -15.76315 -15.48850 -15.28074 -15.00090 -14.67269 -14.22102 -14.17827 -14.03565 -13.78490 -13.70234 -13.61551 -13.28892 -12.97882 -12.94041 -12.81310 -12.54025 -12.19768 -12.02139 -11.73499 -11.62055 -11.36954 -11.32797 -11.30303 -11.22240 -10.90892 -10.67563 -10.63757 -10.36118 -10.24393 -9.97950 -9.85563 -9.71665 -8.81872 -8.49242 -8.42283 -8.20252 -7.61268 -6.43198 -5.99459 -4.15777 1.56795 2.17026 2.27456 2.54340 3.27257 3.34035 3.39096 3.76407 4.10890 4.20003 4.39743 4.43132 4.65031 4.74088 4.76935 4.91353 4.92298 4.97354 4.99829 5.13331 5.23017 5.28185 5.29629 5.40433 5.40835 5.49410 5.61303 5.68550 5.75942 5.80806 5.83619 5.87387 6.05931 6.12156 6.32814 6.44501 6.48430 6.70886 6.91508 7.02217 7.10586 7.22654 7.25254 7.28832 7.34935 7.44568 7.65834 7.82930 8.17672 8.30248 8.52832 8.93689 9.51067 10.97109 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002447 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.028224 B =11438.156408 C =12020.704769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.218 6.218 3 C -0.081 4.081 4 C 0.106 3.894 5 H 0.086 0.914 6 C -0.147 4.147 7 C 0.078 3.922 8 O -0.575 6.575 9 N -0.667 5.667 10 C 0.117 3.883 11 C -0.173 4.173 12 C -0.047 4.047 13 C -0.223 4.223 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.530 4.530 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.896 3.104 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.189 4.189 27 C -0.067 4.067 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.345 0.655 39 H 0.029 0.971 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.130 0.870 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.791 1.946 -22.015 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.008 5.992 3 C -0.230 4.230 4 C -0.006 4.006 5 H 0.105 0.895 6 C -0.188 4.188 7 C -0.001 4.001 8 O -0.380 6.380 9 N -0.297 5.297 10 C -0.011 4.011 11 C -0.176 4.176 12 C -0.066 4.066 13 C -0.246 4.246 14 C 0.135 3.865 15 N -0.322 5.322 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.569 4.569 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.723 3.277 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.211 4.211 27 C -0.086 4.086 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.226 0.774 38 H 0.164 0.836 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.906 0.265 -21.228 24.340 hybrid contribution -1.406 2.439 0.419 2.847 sum -13.312 2.704 -20.809 24.850 Atomic orbital electron populations 1.23435 0.96584 1.06218 1.04297 1.87261 1.04195 1.09901 1.97823 1.23571 0.99388 0.95803 1.04232 1.21215 0.92257 0.91445 0.95655 0.89540 1.22319 1.03027 0.95712 0.97767 1.22211 0.97723 0.82378 0.97756 1.86511 1.80988 1.24677 1.45838 1.60719 1.19686 1.44857 1.04438 1.20683 0.86758 0.97728 0.95914 1.19124 1.06921 0.93945 0.97592 1.20493 0.96287 0.93891 0.95965 1.20574 1.08256 0.99205 0.96551 1.17960 0.90380 0.92052 0.86102 1.47091 1.60018 1.06373 1.18689 1.21470 0.99589 0.81864 1.01652 1.19274 0.92266 0.90255 0.85287 1.21589 0.95032 1.30832 1.09422 0.92244 1.24962 0.95365 0.95967 0.97805 1.69935 1.15007 1.36985 1.31567 0.86528 0.81685 0.78172 0.81298 1.20634 1.21106 1.19758 1.20829 1.07060 0.93686 0.99540 1.20647 0.96661 0.98209 0.93131 0.91247 0.88344 0.90767 0.90142 0.90389 0.90697 0.90340 0.93511 0.93614 0.77446 0.83566 0.95246 0.91070 0.87224 0.86952 0.94656 0.91510 0.92628 0.95252 0.94654 0.92676 0.85212 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 10.76 101.05 1.09 0.06 16 2 S -0.22 -2.27 21.96 -107.50 -2.36 -4.63 16 3 C -0.08 -0.68 5.39 37.16 0.20 -0.48 16 4 C 0.11 0.95 2.11 -67.71 -0.14 0.80 16 5 H 0.09 0.78 7.78 -51.93 -0.40 0.38 16 6 C -0.15 -1.25 5.04 -26.73 -0.13 -1.39 16 7 C 0.08 0.55 6.68 37.16 0.25 0.80 16 8 O -0.57 -4.81 13.66 -35.23 -0.48 -5.29 16 9 N -0.67 -7.59 5.78 -107.99 -0.62 -8.22 16 10 C 0.12 1.44 5.60 -4.97 -0.03 1.41 16 11 C -0.17 -2.67 5.39 -104.58 -0.56 -3.24 16 12 C -0.05 -0.76 9.69 -39.62 -0.38 -1.14 16 13 C -0.22 -3.99 9.21 -39.38 -0.36 -4.35 16 14 C 0.24 4.98 6.55 -83.78 -0.55 4.43 16 15 N -0.62 -13.41 2.99 -181.00 -0.54 -13.95 16 16 C 0.10 1.77 10.19 59.85 0.61 2.38 16 17 C 0.25 6.31 4.91 -5.20 -0.03 6.29 16 18 C -0.53 -14.59 9.39 -34.44 -0.32 -14.92 16 19 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.90 -25.85 13.29 55.43 0.74 -25.12 16 22 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.19 -3.85 9.21 -39.38 -0.36 -4.22 16 27 C -0.07 -1.15 9.69 -39.61 -0.38 -1.53 16 28 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 0.52 6.69 -51.92 -0.35 0.17 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.76 7.44 -51.93 -0.39 0.38 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.27 6.83 -51.93 -0.35 -0.09 16 37 H 0.38 1.39 9.12 45.56 0.42 1.80 16 38 H 0.35 4.11 8.45 -39.30 -0.33 3.78 16 39 H 0.03 0.34 7.39 -51.93 -0.38 -0.04 16 40 H 0.07 0.85 8.00 -51.93 -0.42 0.43 16 41 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 42 H 0.11 1.83 6.14 -52.49 -0.32 1.51 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.95 6.20 -51.93 -0.32 0.62 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.13 2.93 6.14 -52.49 -0.32 2.61 16 50 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 415.55 15.07 6.26 6.26 Total: -1.00 -31.07 415.55 -10.93 -42.00 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.68 Total: 5.99 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: -1.21 Total: -13.50 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.43 Total: -47.28 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.48 Total: -5.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -2.36 Total: -4.63 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.07 -10.93 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077461921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.740 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds