Wall clock time and date at job start Tue Mar 31 2020 21:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00017 * 2 1 4 4 C 1.52999 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47181 * 59.99683 * 4 3 2 6 6 C 1.53000 * 109.47536 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47188 * 294.83800 * 6 4 3 8 8 O 1.42897 * 109.46918 * 185.18983 * 7 6 4 9 9 N 1.46908 * 109.46948 * 299.99829 * 4 3 2 10 10 C 1.46897 * 110.99583 * 153.73936 * 9 4 3 11 11 C 1.50705 * 109.46875 * 179.73640 * 10 9 4 12 12 C 1.38281 * 119.92864 * 89.99819 * 11 10 9 13 13 C 1.38100 * 120.07893 * 179.70354 * 12 11 10 14 14 C 1.38916 * 119.92230 * 0.27502 * 13 12 11 15 15 N 1.39677 * 120.07516 * 179.97438 * 14 13 12 16 16 C 1.46500 * 119.99773 * 0.02562 * 15 14 13 17 17 C 1.46492 * 119.99731 * 180.02562 * 15 14 13 18 18 C 1.50700 * 109.47547 * 90.00360 * 17 15 14 19 19 H 1.08004 * 119.99688 * 359.97438 * 18 17 15 20 20 C 1.37870 * 120.00385 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99935 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47180 * 89.99688 * 22 20 18 24 24 H 1.48503 * 109.47253 * 209.99489 * 22 20 18 25 25 H 1.48498 * 109.47072 * 329.99345 * 22 20 18 26 26 C 1.38912 * 119.85246 * 0.02562 * 14 13 12 27 27 C 1.38112 * 119.92206 * 359.97438 * 26 14 13 28 28 H 1.09007 * 109.47135 * 59.99966 * 1 2 3 29 29 H 1.08996 * 109.47340 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47586 * 300.00311 * 1 2 3 31 31 H 1.09004 * 109.47286 * 59.99578 * 3 2 1 32 32 H 1.09006 * 109.47232 * 299.99853 * 3 2 1 33 33 H 1.09006 * 109.46621 * 54.84043 * 6 4 3 34 34 H 1.09003 * 109.47118 * 174.83014 * 6 4 3 35 35 H 1.08991 * 109.46965 * 305.19247 * 7 6 4 36 36 H 1.08996 * 109.46812 * 65.19254 * 7 6 4 37 37 H 0.96708 * 113.99817 * 179.97438 * 8 7 6 38 38 H 1.00893 * 110.99866 * 277.69081 * 9 4 3 39 39 H 1.08999 * 109.47387 * 59.73683 * 10 9 4 40 40 H 1.08997 * 109.47818 * 299.73536 * 10 9 4 41 41 H 1.08007 * 119.95856 * 359.97438 * 12 11 10 42 42 H 1.07999 * 120.04048 * 180.30022 * 13 12 11 43 43 H 1.08995 * 109.47090 * 90.00016 * 16 15 14 44 44 H 1.09001 * 109.46896 * 210.00162 * 16 15 14 45 45 H 1.09004 * 109.47166 * 329.99536 * 16 15 14 46 46 H 1.09004 * 109.46777 * 209.99676 * 17 15 14 47 47 H 1.08994 * 109.47645 * 329.99625 * 17 15 14 48 48 H 0.96997 * 119.99670 * 180.02562 * 21 20 18 49 49 H 1.07999 * 120.04022 * 180.02562 * 26 14 13 50 50 H 1.07997 * 119.96090 * 180.02562 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7423 1.9399 0.0006 5 1 4.1616 1.4702 -0.8891 6 6 4.0865 3.4307 0.0000 7 6 3.6115 4.0632 -1.3096 8 8 4.0389 5.4258 -1.3630 9 7 4.3063 1.3072 1.2005 10 6 5.6970 0.8926 0.9725 11 6 6.2427 0.2550 2.2243 12 6 6.1111 -1.1078 2.4181 13 6 6.6154 -1.6962 3.5612 14 6 7.2506 -0.9165 4.5196 15 7 7.7614 -1.5082 5.6771 16 6 7.6281 -2.9527 5.8813 17 6 8.4303 -0.6842 6.6869 18 6 7.4160 -0.1944 7.6880 19 1 6.3768 -0.4690 7.5824 20 6 7.8143 0.6052 8.7382 21 7 9.0797 0.9401 8.8665 22 14 6.5569 1.2129 9.9787 23 1 6.4457 0.2348 11.0906 24 1 6.9885 2.5277 10.5175 25 1 5.2370 1.3594 9.3144 26 6 7.3756 0.4532 4.3246 27 6 6.8689 1.0351 3.1791 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8030 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 3.5912 3.9183 0.8397 34 1 5.1655 3.5545 0.0931 35 1 4.0351 3.5163 -2.1518 36 1 2.5235 4.0215 -1.3595 37 1 3.7726 5.8903 -2.1682 38 1 4.2381 1.9205 1.9987 39 1 6.2989 1.7646 0.7168 40 1 5.7325 0.1740 0.1537 41 1 5.6171 -1.7134 1.6727 42 1 6.5166 -2.7613 3.7097 43 1 8.4946 -3.4609 5.4584 44 1 7.5677 -3.1647 6.9488 45 1 6.7226 -3.3073 5.3888 46 1 9.1872 -1.2792 7.1980 47 1 8.9049 0.1695 6.2031 48 1 9.3600 1.5024 9.6056 49 1 7.8691 1.0622 5.0675 50 1 6.9661 2.0999 3.0267 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077461921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:05 Heat of formation + Delta-G solvation = -44.112705 kcal Electronic energy + Delta-G solvation = -26541.538384 eV Core-core repulsion = 22886.727604 eV Total energy + Delta-G solvation = -3654.810780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47263 -39.09104 -37.65725 -36.82506 -34.81674 -33.40131 -31.86140 -30.61267 -29.94034 -29.60383 -29.12691 -27.06800 -25.63943 -24.29025 -23.51956 -22.93620 -21.68770 -20.98258 -18.63333 -18.50646 -18.12019 -17.35949 -16.91894 -16.50560 -16.29903 -16.15953 -15.97988 -15.53421 -15.30728 -15.14397 -14.79886 -14.60610 -14.48164 -14.33840 -14.26790 -14.08591 -14.03862 -13.77676 -13.35605 -13.16866 -13.09737 -12.98639 -12.94328 -12.65908 -12.53328 -12.36716 -12.18738 -12.07629 -11.98320 -11.82086 -11.70558 -11.38683 -10.90190 -10.67300 -10.64115 -10.39273 -9.64000 -9.30371 -8.38603 -8.35809 -7.78680 -6.37460 0.73689 0.86241 0.90858 1.36411 1.37500 1.48885 1.88942 2.34393 2.64789 2.98929 3.06051 3.28998 3.51525 3.72412 4.05034 4.09702 4.14525 4.19581 4.26690 4.33179 4.39602 4.41833 4.43043 4.43915 4.50369 4.59556 4.63346 4.66403 4.72781 4.76113 4.80345 4.88266 4.93913 4.94989 5.01936 5.08083 5.13136 5.15886 5.21468 5.35907 5.60361 5.69451 5.71353 5.95401 6.07573 6.11525 6.25325 6.45975 6.51267 6.83414 6.89841 6.95261 7.34501 8.83268 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010587 B = 0.002447 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.028224 B =11438.156408 C =12020.704769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.279 6.279 3 C -0.067 4.067 4 C 0.114 3.886 5 H 0.091 0.909 6 C -0.142 4.142 7 C 0.078 3.922 8 O -0.600 6.600 9 N -0.675 5.675 10 C 0.124 3.876 11 C -0.156 4.156 12 C -0.046 4.046 13 C -0.218 4.218 14 C 0.213 3.787 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.540 4.540 19 H 0.048 0.952 20 C 0.012 3.988 21 N -0.927 5.927 22 Si 0.961 3.039 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.272 1.272 26 C -0.216 4.216 27 C -0.067 4.067 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.398 0.602 38 H 0.341 0.659 39 H 0.038 0.962 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.009 0.991 47 H 0.011 0.989 48 H 0.267 0.733 49 H 0.094 0.906 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 2.041 -24.173 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.053 6.053 3 C -0.216 4.216 4 C 0.003 3.997 5 H 0.109 0.891 6 C -0.183 4.183 7 C 0.000 4.000 8 O -0.408 6.408 9 N -0.305 5.305 10 C -0.004 4.004 11 C -0.159 4.159 12 C -0.065 4.065 13 C -0.241 4.241 14 C 0.108 3.892 15 N -0.341 5.341 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.066 0.934 20 C -0.187 4.187 21 N -0.567 5.567 22 Si 0.786 3.214 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.197 1.197 26 C -0.239 4.239 27 C -0.086 4.086 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.159 0.841 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.112 0.888 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.382 0.354 -23.437 27.500 hybrid contribution -0.702 2.450 0.930 2.712 sum -15.083 2.803 -22.507 27.239 Atomic orbital electron populations 1.23430 0.93680 1.06864 1.05214 1.87405 1.07616 1.12333 1.97988 1.23532 0.98822 0.94062 1.05143 1.21173 0.92530 0.91456 0.94556 0.89136 1.22219 1.02052 0.95438 0.98589 1.22233 0.98682 0.82025 0.97087 1.86454 1.81483 1.25377 1.47523 1.60683 1.18888 1.45510 1.05388 1.20620 0.87424 0.98147 0.94215 1.19479 1.04715 0.93836 0.97874 1.20837 0.95498 0.94402 0.95743 1.20794 1.07201 0.99922 0.96173 1.18216 0.91955 0.92417 0.86593 1.46959 1.61028 1.07400 1.18678 1.21594 1.01408 0.79994 1.01479 1.18761 0.91573 0.89605 0.85532 1.21771 0.94778 1.31128 1.10219 0.93369 1.25780 0.97241 0.96011 0.99649 1.70041 1.16729 1.37583 1.32351 0.85504 0.79024 0.77942 0.78915 1.19558 1.20351 1.19697 1.20744 1.08839 0.93920 1.00416 1.20813 0.96199 0.99241 0.92373 0.89571 0.87887 0.90563 0.90467 0.88149 0.91478 0.91711 0.92350 0.92004 0.75243 0.84080 0.94392 0.89949 0.84606 0.85190 0.92933 0.92530 0.90441 0.97315 0.97136 0.92386 0.88764 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.56 10.76 113.37 1.22 -0.34 16 2 S -0.28 -5.25 21.96 -56.49 -1.24 -6.49 16 3 C -0.07 -0.96 5.39 71.98 0.39 -0.57 16 4 C 0.11 1.76 2.11 44.91 0.09 1.86 16 5 H 0.09 1.37 7.78 -2.38 -0.02 1.35 16 6 C -0.14 -2.14 5.04 30.59 0.15 -1.99 16 7 C 0.08 0.90 6.68 71.98 0.48 1.38 16 8 O -0.60 -8.79 13.66 -148.98 -2.03 -10.83 16 9 N -0.67 -14.01 5.78 -495.56 -2.87 -16.88 16 10 C 0.12 2.75 5.60 85.56 0.48 3.23 16 11 C -0.16 -4.58 5.39 -19.84 -0.11 -4.69 16 12 C -0.05 -1.38 9.69 22.25 0.22 -1.16 16 13 C -0.22 -7.55 9.21 22.40 0.21 -7.34 16 14 C 0.21 8.96 6.55 38.22 0.25 9.21 16 15 N -0.63 -28.52 2.99 -726.57 -2.17 -30.70 16 16 C 0.10 3.53 10.19 127.77 1.30 4.84 16 17 C 0.27 14.34 4.91 85.63 0.42 14.76 16 18 C -0.54 -30.94 9.39 25.60 0.24 -30.70 16 19 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 20 C 0.01 0.70 5.46 84.65 0.46 1.16 16 21 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 22 Si 0.96 44.74 29.54 68.60 2.03 46.77 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 26 C -0.22 -9.25 9.21 22.40 0.21 -9.04 16 27 C -0.07 -2.30 9.69 22.25 0.22 -2.08 16 28 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.00 6.69 -2.39 -0.02 0.98 16 33 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.06 1.16 7.44 -2.39 -0.02 1.15 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.52 6.83 -2.39 -0.02 0.50 16 37 H 0.40 2.04 9.12 -74.05 -0.68 1.37 16 38 H 0.34 7.63 8.45 -89.70 -0.76 6.88 16 39 H 0.04 0.80 7.39 -2.39 -0.02 0.78 16 40 H 0.08 1.70 8.00 -2.39 -0.02 1.68 16 41 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 42 H 0.13 3.96 6.14 -2.91 -0.02 3.95 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 2.11 8.07 -2.39 -0.02 2.09 16 45 H 0.08 2.40 6.20 -2.38 -0.01 2.38 16 46 H 0.01 0.50 8.07 -2.38 -0.02 0.48 16 47 H 0.01 0.62 6.20 -2.39 -0.01 0.60 16 48 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 49 H 0.09 4.64 6.14 -2.91 -0.02 4.62 16 50 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.12 415.55 -0.27 -69.39 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -0.50 Total: 25.08 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 6.23 Total: -21.48 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -4.75 Total: -102.45 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -2.03 Total: -10.83 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -1.24 Total: -6.49 kcal Total: -69.12 -0.27 -69.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077461921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.277 kcal (2) G-P(sol) polarization free energy of solvation -69.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds