Wall clock time and date at job start Tue Mar 31 2020 21:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46972 * 2 1 4 4 C 1.46897 * 110.99727 * 199.86140 * 3 2 1 5 5 C 1.50698 * 109.47302 * 66.04917 * 4 3 2 6 6 H 1.08003 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00514 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00138 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99776 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47297 * 89.99910 * 9 7 5 11 11 H 1.48508 * 109.47204 * 210.00286 * 9 7 5 12 12 H 1.48512 * 109.47074 * 329.99662 * 9 7 5 13 13 C 1.46895 * 110.99998 * 75.91195 * 3 2 1 14 14 C 1.50702 * 109.47413 * 200.42094 * 13 3 2 15 15 O 1.21286 * 119.99683 * 355.54912 * 14 13 3 16 16 N 1.34769 * 120.00479 * 175.54182 * 14 13 3 17 17 C 1.46502 * 119.99910 * 0.02562 * 16 14 13 18 18 C 1.46501 * 120.00073 * 180.02562 * 16 14 13 19 19 C 1.52999 * 109.47302 * 270.00386 * 18 16 14 20 20 O 1.42898 * 109.47193 * 64.99616 * 19 18 16 21 21 C 1.35959 * 116.99763 * 179.97438 * 20 19 18 22 22 C 1.38654 * 120.06250 * 359.97438 * 21 20 19 23 23 C 1.38189 * 119.96542 * 180.02562 * 22 21 20 24 24 C 1.38255 * 120.09602 * 359.97438 * 23 22 21 25 25 C 1.38252 * 120.12716 * 0.02562 * 24 23 22 26 26 C 1.38335 * 120.03347 * 359.97438 * 25 24 23 27 27 F 1.35092 * 120.05165 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.46960 * 294.80257 * 1 2 3 29 29 H 1.08996 * 109.47364 * 54.80171 * 1 2 3 30 30 H 1.08996 * 109.47090 * 174.80932 * 1 2 3 31 31 H 1.09002 * 109.46932 * 240.00103 * 2 1 3 32 32 H 1.09001 * 109.47363 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.47241 * 186.04274 * 4 3 2 34 34 H 1.09001 * 109.47974 * 306.04543 * 4 3 2 35 35 H 0.97000 * 119.99426 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47309 * 80.42260 * 13 3 2 37 37 H 1.08999 * 109.47176 * 320.42346 * 13 3 2 38 38 H 1.09004 * 109.46688 * 269.99301 * 17 16 14 39 39 H 1.08994 * 109.47186 * 29.99694 * 17 16 14 40 40 H 1.08999 * 109.47199 * 149.99959 * 17 16 14 41 41 H 1.09004 * 109.47036 * 150.00286 * 18 16 14 42 42 H 1.08997 * 109.47179 * 30.00437 * 18 16 14 43 43 H 1.09008 * 109.46515 * 304.99859 * 19 18 16 44 44 H 1.08995 * 109.47181 * 185.00352 * 19 18 16 45 45 H 1.08001 * 120.02143 * 0.04987 * 22 21 20 46 46 H 1.08001 * 119.95042 * 180.27858 * 23 22 21 47 47 H 1.08002 * 119.93908 * 179.97438 * 24 23 22 48 48 H 1.08006 * 119.98852 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4112 1.4513 -0.4659 5 6 3.4749 1.0486 -1.9167 6 1 2.5721 0.7707 -2.4402 7 6 4.6859 1.0349 -2.5759 8 7 4.7415 0.6829 -3.8419 9 14 6.2476 1.5148 -1.6704 10 1 6.8522 0.3077 -1.0522 11 1 7.2105 2.1155 -2.6283 12 1 5.9217 2.5032 -0.6109 13 6 1.8804 1.9926 1.3301 14 6 1.9032 3.4939 1.2016 15 8 2.1044 4.0070 0.1212 16 7 1.7000 4.2664 2.2870 17 6 1.4574 3.6467 3.5921 18 6 1.7217 5.7259 2.1618 19 6 3.1473 6.2356 2.3825 20 8 3.9928 5.7538 1.3361 21 6 5.3017 6.1186 1.3828 22 6 5.7620 6.9236 2.4137 23 6 7.0927 7.2936 2.4589 24 6 7.9661 6.8619 1.4779 25 6 7.5113 6.0591 0.4483 26 6 6.1803 5.6855 0.3978 27 9 5.7356 4.9007 -0.6078 28 1 -0.3633 0.4311 0.9329 29 1 -0.3634 0.5923 -0.8397 30 1 -0.3633 -1.0234 -0.0930 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7833 2.4699 -0.3550 34 1 4.0256 0.7735 0.1266 35 1 5.5934 0.6736 -4.3056 36 1 2.7053 1.6698 1.9652 37 1 0.9356 1.6804 1.7751 38 1 0.3869 3.4920 3.7275 39 1 1.9722 2.6872 3.6400 40 1 1.8325 4.3000 4.3799 41 1 1.0594 6.1645 2.9083 42 1 1.3845 6.0102 1.1651 43 1 3.5170 5.8762 3.3429 44 1 3.1483 7.3256 2.3777 45 1 5.0811 7.2610 3.1811 46 1 7.4519 7.9170 3.2644 47 1 9.0054 7.1530 1.5156 48 1 8.1956 5.7228 -0.3166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081040939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:21 Heat of formation + Delta-G solvation = -64.587746 kcal Electronic energy + Delta-G solvation = -31092.991042 eV Core-core repulsion = 26871.079222 eV Total energy + Delta-G solvation = -4221.911820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.39199 -40.15830 -39.38634 -37.52301 -36.53634 -35.17222 -32.37945 -31.34992 -30.73011 -30.22391 -29.39182 -28.21997 -26.58610 -25.44261 -23.77381 -22.47176 -22.03814 -21.85423 -20.07471 -18.77815 -18.50350 -17.04728 -16.83411 -16.71290 -16.55424 -16.25548 -15.58272 -15.50629 -15.04730 -14.73065 -14.60035 -14.36880 -14.13310 -13.71383 -13.61575 -13.43995 -13.02883 -12.74019 -12.73024 -12.65769 -12.49093 -12.35666 -12.21766 -12.07129 -11.86669 -11.67639 -11.49098 -11.14883 -11.13029 -11.01608 -10.96438 -10.55957 -10.33051 -9.90509 -9.60625 -9.28238 -8.98861 -8.91994 -8.52147 -8.35984 -8.15131 -7.28173 -5.85591 -3.80270 1.07893 1.22546 2.99509 3.10822 3.26266 3.43406 3.51993 3.53256 3.64930 4.32426 4.57286 4.64104 4.71222 4.74514 4.83112 4.87640 4.92501 5.02278 5.06255 5.12870 5.18516 5.25066 5.34094 5.48285 5.50738 5.52554 5.56970 5.72848 5.74910 5.82223 5.93504 5.98968 5.99152 6.10075 6.12376 6.27841 6.29970 6.57031 6.67401 6.74347 6.80246 7.03615 7.19234 7.35703 7.55615 7.86680 8.03866 8.18655 8.75862 8.86157 9.22461 9.77837 11.27605 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.005598 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.920513 B = 5000.412764 C = 7640.137567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.510 5.510 4 C 0.164 3.836 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.905 5.905 9 Si 0.865 3.135 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.253 1.253 13 C 0.039 3.961 14 C 0.510 3.490 15 O -0.475 6.475 16 N -0.633 5.633 17 C 0.082 3.918 18 C 0.121 3.879 19 C 0.040 3.960 20 O -0.280 6.280 21 C 0.099 3.901 22 C -0.189 4.189 23 C -0.098 4.098 24 C -0.134 4.134 25 C -0.122 4.122 26 C 0.076 3.924 27 F -0.113 7.113 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.018 0.982 33 H 0.044 0.956 34 H -0.025 1.025 35 H 0.260 0.740 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.595 12.690 21.041 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.234 5.234 4 C 0.038 3.962 5 C -0.535 4.535 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.545 5.545 9 Si 0.692 3.308 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.177 1.177 13 C -0.093 4.093 14 C 0.297 3.703 15 O -0.344 6.344 16 N -0.372 5.372 17 C -0.062 4.062 18 C -0.003 4.003 19 C -0.037 4.037 20 O -0.193 6.193 21 C 0.052 3.948 22 C -0.208 4.208 23 C -0.116 4.116 24 C -0.152 4.152 25 C -0.141 4.141 26 C 0.056 3.944 27 F -0.092 7.092 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.036 0.964 33 H 0.062 0.938 34 H -0.008 1.008 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.782 13.043 19.731 23.720 hybrid contribution 1.434 -0.210 1.195 1.879 sum -0.348 12.833 20.927 24.550 Atomic orbital electron populations 1.21788 0.96385 1.00544 1.01324 1.22056 0.94503 0.89395 1.01374 1.61691 1.25113 1.16964 1.19653 1.20260 0.82638 0.96878 0.96395 1.20964 0.95198 1.43915 0.93394 0.90260 1.24820 0.98633 0.94941 0.94700 1.69900 1.25597 1.49419 1.09554 0.87000 0.83833 0.79091 0.80835 1.21091 1.21358 1.17670 1.21957 1.01425 0.91935 0.94017 1.20813 0.76473 0.89495 0.83548 1.90791 1.43348 1.74358 1.25883 1.47924 1.74884 1.05495 1.08917 1.21715 1.00923 0.98937 0.84579 1.21386 0.93098 0.81174 1.04636 1.23385 0.91619 0.98587 0.90074 1.86447 1.15238 1.69762 1.47806 1.19159 0.84838 0.96084 0.94745 1.21101 0.97571 1.02669 0.99428 1.20926 0.92571 0.99408 0.98710 1.20870 1.00180 0.99405 0.94734 1.21122 0.93242 0.99324 1.00434 1.17245 0.91965 0.97055 0.88097 1.91699 1.89544 1.70915 1.57011 0.94185 0.91825 0.93138 0.88692 0.96385 0.93753 1.00774 0.92978 0.93205 0.89381 0.92772 0.91133 0.91710 0.88651 0.88585 0.92109 0.91317 0.84908 0.85408 0.85109 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.96 37.16 0.37 -1.93 16 2 C 0.05 1.08 5.50 -3.82 -0.02 1.06 16 3 N -0.51 -11.53 4.01 -237.52 -0.95 -12.48 16 4 C 0.16 4.41 3.39 -4.98 -0.02 4.39 16 5 C -0.50 -15.30 8.78 -34.44 -0.30 -15.60 16 6 H 0.08 2.63 7.56 -52.48 -0.40 2.23 16 7 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 8 N -0.90 -29.60 13.96 55.43 0.77 -28.83 16 9 Si 0.86 23.64 27.47 -169.99 -4.67 18.97 16 10 H -0.28 -7.53 7.11 56.52 0.40 -7.12 16 11 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 12 H -0.25 -6.85 5.43 56.52 0.31 -6.55 16 13 C 0.04 0.69 3.78 -4.98 -0.02 0.67 16 14 C 0.51 9.51 7.04 -10.99 -0.08 9.44 16 15 O -0.47 -11.37 13.87 -2.23 -0.03 -11.40 16 16 N -0.63 -8.38 2.86 -181.57 -0.52 -8.90 16 17 C 0.08 0.71 10.16 59.85 0.61 1.31 16 18 C 0.12 1.34 5.86 -4.04 -0.02 1.32 16 19 C 0.04 0.45 5.08 37.16 0.19 0.64 16 20 O -0.28 -4.81 8.79 -27.39 -0.24 -5.05 16 21 C 0.10 1.58 6.69 -39.18 -0.26 1.32 16 22 C -0.19 -2.20 9.04 -39.45 -0.36 -2.55 16 23 C -0.10 -0.99 10.04 -39.59 -0.40 -1.39 16 24 C -0.13 -1.47 10.04 -39.57 -0.40 -1.87 16 25 C -0.12 -1.75 10.02 -39.54 -0.40 -2.14 16 26 C 0.08 1.38 7.31 -39.30 -0.29 1.10 16 27 F -0.11 -2.63 16.02 2.25 0.04 -2.60 16 28 H 0.04 0.56 6.90 -51.93 -0.36 0.20 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.15 6.58 -51.93 -0.34 1.81 16 32 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 33 H 0.04 1.30 5.69 -51.93 -0.30 1.00 16 34 H -0.03 -0.67 7.55 -51.93 -0.39 -1.06 16 35 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 36 H 0.05 0.85 7.47 -51.93 -0.39 0.46 16 37 H 0.09 1.28 6.41 -51.93 -0.33 0.95 16 38 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.62 6.56 -51.93 -0.34 0.28 16 40 H 0.06 0.40 8.07 -51.93 -0.42 -0.02 16 41 H 0.10 0.65 8.07 -51.93 -0.42 0.23 16 42 H 0.10 1.32 7.42 -51.93 -0.39 0.93 16 43 H 0.06 0.57 7.67 -51.92 -0.40 0.17 16 44 H 0.07 0.59 7.66 -51.93 -0.40 0.19 16 45 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 46 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 48 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -39.81 389.63 -8.60 -48.41 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.38 Total: -1.84 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.49 Total: -2.16 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.70 Total: -50.21 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -0.27 Total: -16.44 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.60 kcal Atomic # 14 Polarization: 23.64 SS G_CDS: -4.67 Total: 18.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.81 -8.60 -48.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.180 kcal (2) G-P(sol) polarization free energy of solvation -39.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds