Wall clock time and date at job start Tue Mar 31 2020 21:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.46972 * 2 1 4 4 C 1.46897 * 110.99727 * 199.86140 * 3 2 1 5 5 C 1.50698 * 109.47302 * 66.04917 * 4 3 2 6 6 H 1.08003 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00514 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00138 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99776 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47297 * 89.99910 * 9 7 5 11 11 H 1.48508 * 109.47204 * 210.00286 * 9 7 5 12 12 H 1.48512 * 109.47074 * 329.99662 * 9 7 5 13 13 C 1.46895 * 110.99998 * 75.91195 * 3 2 1 14 14 C 1.50702 * 109.47413 * 200.42094 * 13 3 2 15 15 O 1.21286 * 119.99683 * 355.54912 * 14 13 3 16 16 N 1.34769 * 120.00479 * 175.54182 * 14 13 3 17 17 C 1.46502 * 119.99910 * 0.02562 * 16 14 13 18 18 C 1.46501 * 120.00073 * 180.02562 * 16 14 13 19 19 C 1.52999 * 109.47302 * 270.00386 * 18 16 14 20 20 O 1.42898 * 109.47193 * 64.99616 * 19 18 16 21 21 C 1.35959 * 116.99763 * 179.97438 * 20 19 18 22 22 C 1.38654 * 120.06250 * 359.97438 * 21 20 19 23 23 C 1.38189 * 119.96542 * 180.02562 * 22 21 20 24 24 C 1.38255 * 120.09602 * 359.97438 * 23 22 21 25 25 C 1.38252 * 120.12716 * 0.02562 * 24 23 22 26 26 C 1.38335 * 120.03347 * 359.97438 * 25 24 23 27 27 F 1.35092 * 120.05165 * 180.02562 * 26 25 24 28 28 H 1.08998 * 109.46960 * 294.80257 * 1 2 3 29 29 H 1.08996 * 109.47364 * 54.80171 * 1 2 3 30 30 H 1.08996 * 109.47090 * 174.80932 * 1 2 3 31 31 H 1.09002 * 109.46932 * 240.00103 * 2 1 3 32 32 H 1.09001 * 109.47363 * 119.99934 * 2 1 3 33 33 H 1.09004 * 109.47241 * 186.04274 * 4 3 2 34 34 H 1.09001 * 109.47974 * 306.04543 * 4 3 2 35 35 H 0.97000 * 119.99426 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47309 * 80.42260 * 13 3 2 37 37 H 1.08999 * 109.47176 * 320.42346 * 13 3 2 38 38 H 1.09004 * 109.46688 * 269.99301 * 17 16 14 39 39 H 1.08994 * 109.47186 * 29.99694 * 17 16 14 40 40 H 1.08999 * 109.47199 * 149.99959 * 17 16 14 41 41 H 1.09004 * 109.47036 * 150.00286 * 18 16 14 42 42 H 1.08997 * 109.47179 * 30.00437 * 18 16 14 43 43 H 1.09008 * 109.46515 * 304.99859 * 19 18 16 44 44 H 1.08995 * 109.47181 * 185.00352 * 19 18 16 45 45 H 1.08001 * 120.02143 * 0.04987 * 22 21 20 46 46 H 1.08001 * 119.95042 * 180.27858 * 23 22 21 47 47 H 1.08002 * 119.93908 * 179.97438 * 24 23 22 48 48 H 1.08006 * 119.98852 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4112 1.4513 -0.4659 5 6 3.4749 1.0486 -1.9167 6 1 2.5721 0.7707 -2.4402 7 6 4.6859 1.0349 -2.5759 8 7 4.7415 0.6829 -3.8419 9 14 6.2476 1.5148 -1.6704 10 1 6.8522 0.3077 -1.0522 11 1 7.2105 2.1155 -2.6283 12 1 5.9217 2.5032 -0.6109 13 6 1.8804 1.9926 1.3301 14 6 1.9032 3.4939 1.2016 15 8 2.1044 4.0070 0.1212 16 7 1.7000 4.2664 2.2870 17 6 1.4574 3.6467 3.5921 18 6 1.7217 5.7259 2.1618 19 6 3.1473 6.2356 2.3825 20 8 3.9928 5.7538 1.3361 21 6 5.3017 6.1186 1.3828 22 6 5.7620 6.9236 2.4137 23 6 7.0927 7.2936 2.4589 24 6 7.9661 6.8619 1.4779 25 6 7.5113 6.0591 0.4483 26 6 6.1803 5.6855 0.3978 27 9 5.7356 4.9007 -0.6078 28 1 -0.3633 0.4311 0.9329 29 1 -0.3634 0.5923 -0.8397 30 1 -0.3633 -1.0234 -0.0930 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.7833 2.4699 -0.3550 34 1 4.0256 0.7735 0.1266 35 1 5.5934 0.6736 -4.3056 36 1 2.7053 1.6698 1.9652 37 1 0.9356 1.6804 1.7751 38 1 0.3869 3.4920 3.7275 39 1 1.9722 2.6872 3.6400 40 1 1.8325 4.3000 4.3799 41 1 1.0594 6.1645 2.9083 42 1 1.3845 6.0102 1.1651 43 1 3.5170 5.8762 3.3429 44 1 3.1483 7.3256 2.3777 45 1 5.0811 7.2610 3.1811 46 1 7.4519 7.9170 3.2644 47 1 9.0054 7.1530 1.5156 48 1 8.1956 5.7228 -0.3166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081040939.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:20 Heat of formation + Delta-G solvation = -94.211491 kcal Electronic energy + Delta-G solvation = -31094.275624 eV Core-core repulsion = 26871.079222 eV Total energy + Delta-G solvation = -4223.196402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.82858 -41.23015 -40.62730 -38.62475 -38.06510 -36.41679 -34.74843 -32.37260 -31.81356 -31.68194 -30.62016 -29.79739 -27.53239 -27.00496 -24.83943 -23.95641 -23.48322 -22.95912 -21.68815 -20.06410 -19.53450 -18.99874 -18.19425 -18.02547 -17.65768 -17.39960 -17.02329 -16.86058 -16.33479 -16.06476 -15.96986 -15.65951 -15.43132 -15.38293 -15.02831 -14.83293 -14.52311 -14.29599 -14.02039 -13.85332 -13.75771 -13.48511 -13.33928 -13.19857 -12.98714 -12.89113 -12.83079 -12.69062 -12.56883 -12.52540 -12.14386 -12.04836 -11.87832 -11.87246 -11.61349 -11.44376 -10.81532 -10.55478 -9.97961 -9.56946 -9.20701 -9.00914 -8.32749 -6.31775 0.08778 0.25561 1.18175 1.27070 1.44582 1.84048 2.01680 2.22089 2.30566 2.58159 3.01284 3.24371 3.31141 3.68791 3.77508 3.84728 4.04478 4.12235 4.13610 4.16882 4.24261 4.27742 4.31955 4.34242 4.37885 4.44601 4.47818 4.60457 4.69555 4.75254 4.82836 4.90194 4.92793 4.97530 4.98322 5.07678 5.08495 5.22858 5.26526 5.36633 5.42784 5.58554 5.65969 5.75246 5.94122 6.33373 6.41177 6.48015 6.65704 6.71847 7.30235 7.48267 8.84004 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.005598 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.920513 B = 5000.412764 C = 7640.137567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 N -0.536 5.536 4 C 0.186 3.814 5 C -0.502 4.502 6 H 0.039 0.961 7 C 0.013 3.987 8 N -0.946 5.946 9 Si 0.932 3.068 10 H -0.261 1.261 11 H -0.284 1.284 12 H -0.258 1.258 13 C 0.040 3.960 14 C 0.502 3.498 15 O -0.546 6.546 16 N -0.624 5.624 17 C 0.072 3.928 18 C 0.116 3.884 19 C 0.032 3.968 20 O -0.327 6.327 21 C 0.080 3.920 22 C -0.179 4.179 23 C -0.079 4.079 24 C -0.127 4.127 25 C -0.132 4.132 26 C 0.006 3.994 27 F -0.162 7.162 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.017 0.983 34 H -0.022 1.022 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.150 0.850 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.170 0.830 46 H 0.177 0.823 47 H 0.168 0.832 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 14.497 26.902 30.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.074 4.074 3 N -0.260 5.260 4 C 0.059 3.941 5 C -0.540 4.540 6 H 0.057 0.943 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.757 3.243 10 H -0.186 1.186 11 H -0.210 1.210 12 H -0.182 1.182 13 C -0.091 4.091 14 C 0.289 3.711 15 O -0.421 6.421 16 N -0.360 5.360 17 C -0.069 4.069 18 C -0.006 4.006 19 C -0.043 4.043 20 O -0.241 6.241 21 C 0.033 3.967 22 C -0.198 4.198 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.151 4.151 26 C -0.013 4.013 27 F -0.141 7.141 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.035 0.965 34 H -0.005 1.005 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.168 0.832 42 H 0.077 0.923 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.187 0.813 46 H 0.194 0.806 47 H 0.186 0.814 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.426 14.847 25.681 29.698 hybrid contribution 1.225 -0.675 -0.513 1.490 sum -0.201 14.172 25.168 28.884 Atomic orbital electron populations 1.21695 0.93265 1.02032 1.01856 1.22074 0.96987 0.87812 1.00525 1.61494 1.22202 1.18998 1.23339 1.19773 0.85621 0.94752 0.93921 1.21209 0.93819 1.43356 0.95612 0.94271 1.25663 1.02186 0.94974 0.95548 1.70031 1.26732 1.50862 1.11133 0.85944 0.79619 0.79206 0.79551 1.18597 1.20995 1.18177 1.22080 1.03831 0.91642 0.91585 1.21034 0.75947 0.90139 0.83972 1.90773 1.47002 1.75439 1.28922 1.47931 1.72593 1.06274 1.09203 1.22084 1.02729 0.99458 0.82663 1.21683 0.94456 0.80085 1.04410 1.23723 0.90495 1.00348 0.89762 1.86420 1.16286 1.70971 1.50384 1.19451 0.84509 0.97202 0.95547 1.21533 0.98993 1.00818 0.98422 1.21543 0.91531 0.97802 0.98794 1.21343 1.02187 0.97583 0.93335 1.21337 0.91842 1.00086 1.01798 1.18044 0.94394 0.99800 0.89094 1.91549 1.90313 1.72879 1.59381 0.91107 0.94315 0.90593 0.92915 0.93752 0.96533 1.00451 0.92617 0.91955 0.85347 0.90397 0.91265 0.88265 0.83200 0.92312 0.89556 0.88503 0.81310 0.80599 0.81441 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.96 71.98 0.72 -3.36 16 2 C 0.05 2.13 5.50 86.30 0.48 2.61 16 3 N -0.54 -25.01 4.01 -905.38 -3.63 -28.64 16 4 C 0.19 10.54 3.39 85.56 0.29 10.83 16 5 C -0.50 -33.08 8.78 25.60 0.22 -32.85 16 6 H 0.04 2.82 7.56 -2.91 -0.02 2.80 16 7 C 0.01 0.88 5.47 84.66 0.46 1.34 16 8 N -0.95 -65.22 13.96 21.45 0.30 -64.92 16 9 Si 0.93 51.87 27.47 68.60 1.88 53.76 16 10 H -0.26 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.28 -15.49 7.11 99.48 0.71 -14.78 16 12 H -0.26 -14.57 5.43 99.48 0.54 -14.03 16 13 C 0.04 1.39 3.78 85.56 0.32 1.71 16 14 C 0.50 18.94 7.04 87.66 0.62 19.56 16 15 O -0.55 -27.98 13.87 4.39 0.06 -27.92 16 16 N -0.62 -15.30 2.86 -846.76 -2.42 -17.72 16 17 C 0.07 0.92 10.16 127.77 1.30 2.22 16 18 C 0.12 2.37 5.86 86.38 0.51 2.88 16 19 C 0.03 0.64 5.08 71.98 0.37 1.01 16 20 O -0.33 -11.52 8.79 -85.65 -0.75 -12.27 16 21 C 0.08 2.57 6.69 22.53 0.15 2.72 16 22 C -0.18 -3.57 9.04 22.36 0.20 -3.37 16 23 C -0.08 -1.23 10.04 22.26 0.22 -1.01 16 24 C -0.13 -2.40 10.04 22.28 0.22 -2.18 16 25 C -0.13 -3.83 10.02 22.30 0.22 -3.61 16 26 C 0.01 0.24 7.31 22.45 0.16 0.40 16 27 F -0.16 -8.32 16.02 44.97 0.72 -7.60 16 28 H 0.07 1.76 6.90 -2.39 -0.02 1.74 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.05 2.52 6.58 -2.39 -0.02 2.51 16 32 H 0.04 1.52 8.00 -2.39 -0.02 1.50 16 33 H 0.02 1.04 5.69 -2.38 -0.01 1.03 16 34 H -0.02 -1.20 7.55 -2.39 -0.02 -1.22 16 35 H 0.26 17.05 8.31 -92.71 -0.77 16.28 16 36 H 0.06 2.04 7.47 -2.39 -0.02 2.02 16 37 H 0.13 3.34 6.41 -2.39 -0.02 3.33 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.07 0.94 6.56 -2.39 -0.02 0.92 16 40 H 0.10 0.64 8.07 -2.39 -0.02 0.62 16 41 H 0.15 1.35 8.07 -2.38 -0.02 1.33 16 42 H 0.06 1.67 7.42 -2.39 -0.02 1.65 16 43 H 0.09 1.25 7.67 -2.38 -0.02 1.23 16 44 H 0.10 1.34 7.66 -2.39 -0.02 1.33 16 45 H 0.17 2.02 6.30 -2.91 -0.02 2.00 16 46 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 47 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 48 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -101.50 389.63 3.43 -98.07 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 0.79 Total: 8.34 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.47 Total: -1.10 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -5.75 Total: -111.28 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -0.69 Total: -40.19 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.72 Total: -7.60 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.88 Total: 53.76 kcal Total: -101.50 3.43 -98.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081040939.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.859 kcal (2) G-P(sol) polarization free energy of solvation -101.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds