Wall clock time and date at job start Tue Mar 31 2020 21:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46899 * 109.47628 * 2 1 4 4 C 1.46900 * 111.00025 * 297.51542 * 3 2 1 5 5 C 1.50704 * 109.46517 * 292.34803 * 4 3 2 6 6 H 1.07989 * 120.00623 * 354.95481 * 5 4 3 7 7 C 1.37882 * 119.99293 * 174.95902 * 5 4 3 8 8 N 1.31510 * 120.00489 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99644 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47248 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47151 * 119.99877 * 9 7 5 12 12 H 1.48501 * 109.47316 * 239.99968 * 9 7 5 13 13 C 1.46898 * 110.99430 * 61.46481 * 3 2 1 14 14 C 1.50699 * 109.47377 * 66.05011 * 13 3 2 15 15 O 1.21281 * 119.99833 * 359.97438 * 14 13 3 16 16 N 1.34779 * 120.00167 * 179.97438 * 14 13 3 17 17 C 1.46498 * 119.99804 * 359.97438 * 16 14 13 18 18 C 1.46498 * 119.99873 * 179.97438 * 16 14 13 19 19 C 1.50703 * 109.47013 * 90.00532 * 18 16 14 20 20 C 1.38268 * 119.93121 * 270.01943 * 19 18 16 21 21 C 1.38179 * 120.09217 * 180.02562 * 20 19 18 22 22 C 1.38668 * 119.96967 * 359.97438 * 21 20 19 23 23 O 1.35956 * 120.05875 * 180.27869 * 22 21 20 24 24 C 1.42899 * 117.00224 * 359.71970 * 23 22 21 25 25 C 1.38898 * 119.87339 * 0.02562 * 22 21 20 26 26 F 1.35099 * 120.04787 * 180.02562 * 25 22 21 27 27 C 1.38255 * 119.93935 * 89.99841 * 19 18 16 28 28 H 1.08997 * 109.46884 * 299.08966 * 1 2 3 29 29 H 1.08995 * 109.47049 * 59.08468 * 1 2 3 30 30 H 1.08999 * 109.47675 * 179.08719 * 1 2 3 31 31 H 1.09003 * 109.47243 * 239.99894 * 2 1 3 32 32 H 1.09001 * 109.46938 * 120.00250 * 2 1 3 33 33 H 1.08998 * 109.46979 * 52.34241 * 4 3 2 34 34 H 1.08989 * 109.47272 * 172.34996 * 4 3 2 35 35 H 0.97003 * 120.00041 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47811 * 306.04329 * 13 3 2 37 37 H 1.09009 * 109.46810 * 186.04478 * 13 3 2 38 38 H 1.08994 * 109.47408 * 269.99694 * 17 16 14 39 39 H 1.09000 * 109.47367 * 30.00486 * 17 16 14 40 40 H 1.09007 * 109.47059 * 149.99660 * 17 16 14 41 41 H 1.09001 * 109.47206 * 330.00284 * 18 16 14 42 42 H 1.09005 * 109.47093 * 209.99831 * 18 16 14 43 43 H 1.07996 * 119.95302 * 0.02562 * 20 19 18 44 44 H 1.08003 * 120.01541 * 179.97438 * 21 20 19 45 45 H 1.09000 * 109.47273 * 299.99973 * 24 23 22 46 46 H 1.08998 * 109.46804 * 60.00437 * 24 23 22 47 47 H 1.09006 * 109.46829 * 179.97438 * 24 23 22 48 48 H 1.07992 * 119.98630 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5980 2.0925 -1.2163 5 6 2.3001 1.5001 -2.4110 6 1 3.0505 0.7360 -2.2723 7 6 1.9844 1.9339 -3.6811 8 7 1.0702 2.8641 -3.8501 9 14 2.8551 1.2001 -5.1620 10 1 3.8324 0.1792 -4.7059 11 1 1.8567 0.5633 -6.0580 12 1 3.5681 2.2740 -5.8993 13 6 1.5776 2.0996 1.2049 14 6 2.2292 1.4889 2.4187 15 8 2.9870 0.5504 2.2926 16 7 1.9699 1.9856 3.6445 17 6 1.0550 3.1196 3.7968 18 6 2.6030 1.3916 4.8245 19 6 3.9121 2.0870 5.0959 20 6 5.0766 1.6152 4.5187 21 6 6.2788 2.2500 4.7657 22 6 6.3178 3.3621 5.5931 23 8 7.4989 3.9914 5.8329 24 6 8.6621 3.4494 5.2043 25 6 5.1472 3.8349 6.1723 26 9 5.1811 4.9184 6.9786 27 6 3.9464 3.1957 5.9212 28 1 -0.3633 0.4996 0.8980 29 1 -0.3633 0.5280 -0.8816 30 1 -0.3634 -1.0275 -0.0164 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5200 1.9901 -1.3408 34 1 1.8552 3.1481 -1.1302 35 1 0.8484 3.1695 -4.7437 36 1 0.4943 2.0221 1.2964 37 1 1.8616 3.1493 1.1295 38 1 1.6179 4.0511 3.7382 39 1 0.3099 3.0947 3.0016 40 1 0.5562 3.0567 4.7640 41 1 2.7848 0.3320 4.6447 42 1 1.9452 1.5063 5.6862 43 1 5.0464 0.7494 3.8739 44 1 7.1877 1.8802 4.3145 45 1 8.8067 2.4203 5.5332 46 1 8.5335 3.4705 4.1222 47 1 9.5335 4.0445 5.4779 48 1 3.0355 3.5622 6.3709 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081515199.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:17 Heat of formation + Delta-G solvation = -72.503387 kcal Electronic energy + Delta-G solvation = -29681.272573 eV Core-core repulsion = 25459.017505 eV Total energy + Delta-G solvation = -4222.255068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.92199 -40.42036 -39.71816 -37.95406 -36.62060 -35.25348 -32.58037 -31.59092 -30.92292 -29.68705 -28.55211 -27.87303 -26.87846 -25.91783 -24.45036 -23.07364 -22.95307 -21.78153 -19.98690 -18.72289 -18.47657 -17.21956 -17.07926 -16.64594 -16.38788 -16.18350 -15.95144 -15.61592 -15.24033 -15.01801 -14.89152 -14.61494 -14.48259 -14.23530 -13.71227 -13.46474 -13.24057 -12.98436 -12.73439 -12.60449 -12.46802 -12.43912 -12.24007 -11.89016 -11.80919 -11.71125 -11.46909 -11.33271 -11.31209 -11.15908 -10.88168 -10.70786 -10.56362 -10.00102 -9.92126 -9.38913 -9.16006 -9.06347 -8.67043 -8.42139 -8.32498 -7.14500 -6.01671 -4.01675 0.92991 0.97850 2.86070 2.91693 3.00038 3.32327 3.39853 3.45800 3.50865 4.00920 4.40707 4.44786 4.55533 4.65122 4.82973 4.86552 4.97447 5.02334 5.03346 5.09142 5.16924 5.23305 5.26372 5.34308 5.35195 5.57872 5.61422 5.66652 5.74191 5.78289 5.86967 5.93140 6.00848 6.08299 6.19930 6.31575 6.40834 6.44362 6.56227 6.71466 7.01385 7.01909 7.27301 7.42054 7.43530 7.84292 8.08873 8.21230 8.46624 8.58290 9.07425 9.62399 11.09144 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002679 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.233520 B =10448.573031 C =11570.500425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.056 3.944 3 N -0.518 5.518 4 C 0.188 3.812 5 C -0.501 4.501 6 H 0.065 0.935 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.035 3.965 14 C 0.520 3.480 15 O -0.515 6.515 16 N -0.623 5.623 17 C 0.078 3.922 18 C 0.161 3.839 19 C -0.114 4.114 20 C -0.059 4.059 21 C -0.182 4.182 22 C 0.096 3.904 23 O -0.312 6.312 24 C 0.026 3.974 25 C 0.061 3.939 26 F -0.135 7.135 27 C -0.103 4.103 28 H 0.038 0.962 29 H 0.067 0.933 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.005 0.995 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.056 0.944 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.102 0.898 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 0.152 22.424 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.072 4.072 3 N -0.242 5.242 4 C 0.064 3.936 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.097 4.097 14 C 0.308 3.692 15 O -0.389 6.389 16 N -0.359 5.359 17 C -0.065 4.065 18 C 0.038 3.962 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.201 4.201 22 C 0.050 3.950 23 O -0.226 6.226 24 C -0.069 4.069 25 C 0.042 3.958 26 F -0.114 7.114 27 C -0.122 4.122 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.120 0.880 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.773 -0.064 22.328 23.062 hybrid contribution -0.387 0.051 -0.918 0.997 sum 5.386 -0.014 21.410 22.077 Atomic orbital electron populations 1.22418 0.99974 1.01035 1.01394 1.22113 0.91286 0.91072 1.02740 1.62098 1.59136 1.01999 1.00920 1.19833 0.94902 0.93619 0.85272 1.21181 1.21166 1.21644 0.89946 0.91729 1.24971 0.95351 0.95306 0.99019 1.69960 1.32122 1.29703 1.22284 0.86462 0.79512 0.79077 0.82522 1.19602 1.21171 1.21077 1.22011 0.97649 0.99441 0.90562 1.21030 0.81360 0.83046 0.83735 1.90605 1.35429 1.27663 1.85209 1.48015 1.46929 1.34704 1.06238 1.21818 0.93165 0.88768 1.02796 1.20232 0.89965 0.97999 0.87986 1.20049 0.96389 0.96729 0.98418 1.21158 0.90773 0.99438 0.96444 1.21203 1.00234 0.96901 1.01771 1.19046 0.85523 0.93512 0.96918 1.86114 1.14018 1.53504 1.68928 1.23133 0.85813 0.99895 0.98084 1.16889 0.92281 0.88882 0.97794 1.91487 1.97140 1.51929 1.70851 1.20851 0.96011 0.95790 0.99582 0.94275 0.91371 0.93342 0.90199 0.91056 0.97773 0.95813 0.93057 0.92621 0.88839 0.92614 0.90611 0.91255 0.88728 0.89771 0.84058 0.84403 0.92382 0.92158 0.87973 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 9.26 37.16 0.34 -3.09 16 2 C 0.06 1.15 5.54 -3.83 -0.02 1.12 16 3 N -0.52 -11.30 4.43 -237.52 -1.05 -12.36 16 4 C 0.19 4.80 4.54 -4.97 -0.02 4.78 16 5 C -0.50 -14.05 8.40 -34.44 -0.29 -14.34 16 6 H 0.06 1.84 7.42 -52.49 -0.39 1.45 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 9 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.03 0.61 3.78 -4.98 -0.02 0.59 16 14 C 0.52 8.28 7.39 -10.99 -0.08 8.20 16 15 O -0.52 -9.64 13.41 5.56 0.07 -9.57 16 16 N -0.62 -7.35 2.86 -182.95 -0.52 -7.87 16 17 C 0.08 0.68 10.28 59.85 0.62 1.29 16 18 C 0.16 1.61 5.57 -5.19 -0.03 1.58 16 19 C -0.11 -1.24 5.46 -104.60 -0.57 -1.81 16 20 C -0.06 -0.70 9.69 -39.59 -0.38 -1.09 16 21 C -0.18 -2.02 9.04 -39.44 -0.36 -2.38 16 22 C 0.10 1.16 6.69 -39.18 -0.26 0.90 16 23 O -0.31 -3.62 10.36 -19.60 -0.20 -3.82 16 24 C 0.03 0.19 9.81 101.05 0.99 1.18 16 25 C 0.06 0.74 7.31 -39.30 -0.29 0.46 16 26 F -0.14 -1.76 17.11 2.25 0.04 -1.72 16 27 C -0.10 -1.06 9.67 -39.54 -0.38 -1.44 16 28 H 0.04 0.64 6.35 -51.93 -0.33 0.31 16 29 H 0.07 1.40 6.26 -51.93 -0.32 1.08 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.78 7.01 -51.93 -0.36 1.42 16 32 H 0.07 1.42 5.86 -51.93 -0.30 1.12 16 33 H 0.00 0.12 6.00 -51.93 -0.31 -0.19 16 34 H 0.02 0.64 7.90 -51.94 -0.41 0.23 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.06 0.89 5.32 -51.93 -0.28 0.61 16 37 H 0.09 1.58 7.88 -51.92 -0.41 1.17 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.66 6.44 -51.93 -0.33 0.33 16 40 H 0.07 0.42 7.89 -51.93 -0.41 0.01 16 41 H 0.09 1.04 7.36 -51.93 -0.38 0.66 16 42 H 0.08 0.60 7.84 -51.93 -0.41 0.19 16 43 H 0.14 1.79 7.57 -52.49 -0.40 1.39 16 44 H 0.14 1.25 6.30 -52.48 -0.33 0.92 16 45 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 46 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -33.37 389.73 -7.93 -41.30 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.00 Total: -0.25 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -0.85 Total: -2.61 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.84 Total: -45.92 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.13 Total: -13.39 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.04 Total: -1.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.37 -7.93 -41.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081515199.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.206 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds