Wall clock time and date at job start Tue Mar 31 2020 21:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00150 * 2 1 4 4 C 1.46901 * 110.99857 * 123.95071 * 2 1 3 5 5 C 1.53002 * 109.47107 * 66.05180 * 4 2 1 6 6 C 1.53002 * 109.47125 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46814 * 179.97438 * 6 5 4 8 8 C 1.46491 * 119.99970 * 269.99469 * 7 6 5 9 9 C 1.50704 * 109.47678 * 270.00361 * 8 7 6 10 10 H 1.07998 * 119.99396 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00418 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99746 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00148 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47190 * 60.00394 * 13 11 9 15 15 H 1.48505 * 109.47319 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47557 * 300.00172 * 13 11 9 17 17 C 1.34779 * 119.99737 * 90.00031 * 7 6 5 18 18 O 1.21283 * 119.99998 * 359.97438 * 17 7 6 19 19 C 1.50700 * 119.99838 * 179.97438 * 17 7 6 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 7 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47386 * 296.04558 * 1 2 3 29 29 H 1.09005 * 109.46940 * 56.05353 * 1 2 3 30 30 H 1.09004 * 109.46965 * 176.04567 * 1 2 3 31 31 H 1.09006 * 109.47119 * 183.95197 * 3 2 1 32 32 H 1.08994 * 109.46989 * 303.95174 * 3 2 1 33 33 H 1.08995 * 109.47186 * 63.95101 * 3 2 1 34 34 H 1.08990 * 109.47374 * 306.04793 * 4 2 1 35 35 H 1.09008 * 109.47047 * 186.04347 * 4 2 1 36 36 H 1.08998 * 109.47626 * 59.99751 * 5 4 2 37 37 H 1.09008 * 109.46487 * 299.99510 * 5 4 2 38 38 H 1.09003 * 109.47224 * 59.99831 * 6 5 4 39 39 H 1.08998 * 109.47075 * 299.99579 * 6 5 4 40 40 H 1.09007 * 109.47463 * 30.00813 * 8 7 6 41 41 H 1.09002 * 109.46885 * 150.00288 * 8 7 6 42 42 H 0.97005 * 120.00221 * 180.02562 * 12 11 9 43 43 H 1.09005 * 109.46403 * 60.00348 * 19 17 7 44 44 H 1.08995 * 109.47035 * 300.00415 * 19 17 7 45 45 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 46 46 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 47 47 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 48 48 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1792 -3.0403 2.1556 7 7 1.8302 -4.4541 1.9957 8 6 0.5733 -4.9653 2.5478 9 6 0.8013 -5.4415 3.9593 10 1 1.7842 -5.3700 4.4011 11 6 -0.2450 -5.9673 4.6871 12 7 -1.4420 -6.0538 4.1493 13 14 0.0380 -6.5582 6.4364 14 1 0.5212 -5.4273 7.2688 15 1 -1.2363 -7.0762 6.9961 16 1 1.0539 -7.6412 6.4349 17 6 2.6656 -5.2845 1.3407 18 8 3.7061 -4.8612 0.8833 19 6 2.3069 -6.7390 1.1767 20 8 3.3427 -7.4063 0.4530 21 6 3.1741 -8.7347 0.2179 22 6 2.0324 -9.3801 0.6695 23 6 1.8647 -10.7310 0.4345 24 6 2.8305 -11.4384 -0.2612 25 9 2.6625 -12.7583 -0.4956 26 6 3.9681 -10.7943 -0.7171 27 6 4.1408 -9.4445 -0.4789 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8526 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9232 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 2.0658 -2.6214 0.0452 37 1 0.5471 -2.3475 0.9324 38 1 1.7444 -2.6614 3.0806 39 1 3.2634 -2.9354 2.1941 40 1 -0.1731 -4.1708 2.5485 41 1 0.2192 -5.7957 1.9370 42 1 -2.1783 -6.4234 4.6614 43 1 1.3689 -6.8221 0.6276 44 1 2.1951 -7.1985 2.1587 45 1 1.2766 -8.8275 1.2078 46 1 0.9778 -11.2348 0.7895 47 1 4.7208 -11.3473 -1.2593 48 1 5.0281 -8.9421 -0.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130808645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:34 Heat of formation + Delta-G solvation = -89.768607 kcal Electronic energy + Delta-G solvation = -29038.926556 eV Core-core repulsion = 24815.922812 eV Total energy + Delta-G solvation = -4223.003744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.78888 -40.16719 -39.05553 -37.64138 -36.89404 -35.24858 -33.05026 -31.77000 -31.24138 -29.70335 -28.03806 -27.61812 -27.45351 -25.55562 -23.26761 -23.10487 -22.56590 -21.86163 -20.67709 -18.68446 -18.30873 -17.29301 -16.90722 -16.58860 -16.09902 -15.91546 -15.71121 -15.43765 -15.40954 -15.03020 -14.74147 -14.56785 -14.51992 -13.95027 -13.84622 -13.68898 -13.48418 -12.94196 -12.74461 -12.59802 -12.42640 -12.26380 -12.07217 -12.03731 -11.81460 -11.68038 -11.62547 -11.30014 -11.19643 -11.04395 -10.89058 -10.81965 -10.66660 -10.36930 -10.16190 -9.89583 -9.18786 -9.18006 -8.68899 -8.37086 -8.03171 -7.88998 -6.32035 -4.41117 1.16565 1.24842 2.94721 3.16056 3.17176 3.21995 3.26080 3.60047 3.88735 4.12319 4.24137 4.33475 4.70901 4.79262 5.00600 5.04824 5.09328 5.12539 5.13088 5.26193 5.32900 5.36815 5.44090 5.52030 5.57787 5.62037 5.64606 5.69631 5.75965 5.76501 5.85513 5.88831 5.96798 6.10003 6.12527 6.17248 6.29291 6.40484 6.53119 6.62884 6.70676 6.96826 7.01570 7.04272 7.32410 7.48547 7.62391 7.88685 8.13107 8.63369 8.82859 9.28346 10.74207 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.003184 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.817379 B = 8792.753194 C =11484.395306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.549 5.549 3 C 0.025 3.975 4 C 0.059 3.941 5 C -0.130 4.130 6 C 0.125 3.875 7 N -0.590 5.590 8 C 0.235 3.765 9 C -0.546 4.546 10 H 0.062 0.938 11 C 0.068 3.932 12 N -0.889 5.889 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.521 3.479 18 O -0.551 6.551 19 C 0.043 3.957 20 O -0.291 6.291 21 C 0.131 3.869 22 C -0.180 4.180 23 C -0.109 4.109 24 C 0.048 3.952 25 F -0.146 7.146 26 C -0.115 4.115 27 C -0.127 4.127 28 H 0.025 0.975 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.267 0.733 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.146 0.854 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.091 1.427 -7.556 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.168 4.168 6 C 0.001 3.999 7 N -0.322 5.322 8 C 0.115 3.885 9 C -0.585 4.585 10 H 0.081 0.919 11 C -0.136 4.136 12 N -0.526 5.526 13 Si 0.723 3.277 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.200 1.200 17 C 0.308 3.692 18 O -0.430 6.430 19 C -0.034 4.034 20 O -0.203 6.203 21 C 0.084 3.916 22 C -0.199 4.199 23 C -0.128 4.128 24 C 0.029 3.971 25 F -0.125 7.125 26 C -0.134 4.134 27 C -0.145 4.145 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.125 0.875 45 H 0.163 0.837 46 H 0.155 0.845 47 H 0.157 0.843 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.723 1.456 -8.236 9.605 hybrid contribution -0.765 -0.243 1.968 2.126 sum 3.957 1.213 -6.268 7.511 Atomic orbital electron populations 1.22441 0.87396 1.02760 1.00121 1.61969 1.08109 1.13443 1.43711 1.22365 1.00744 0.89030 1.00191 1.22072 1.00113 0.93828 0.90929 1.21952 1.01577 0.93353 0.99968 1.21227 1.00682 0.80412 0.97575 1.48065 1.22454 1.08018 1.53621 1.19497 0.79752 0.95418 0.93842 1.21463 0.96257 1.42402 0.98333 0.91936 1.24931 0.94830 0.95247 0.98549 1.69904 1.00512 1.44574 1.37650 0.86577 0.77652 0.79347 0.84099 1.20032 1.21045 1.19961 1.19744 0.83924 0.86837 0.78696 1.90651 1.24959 1.77517 1.49855 1.22665 0.90033 0.92261 0.98474 1.86127 1.45048 1.18020 1.71069 1.19127 0.93933 0.83624 0.94906 1.21346 0.98844 0.95154 1.04557 1.20955 0.99057 0.94171 0.98601 1.17564 0.97255 0.78266 1.04023 1.91466 1.95757 1.32044 1.93204 1.20884 0.97018 0.94344 1.01147 1.20270 0.99813 0.92840 1.01605 0.95648 0.91753 0.90757 0.91427 0.91617 0.95837 0.94652 0.90708 0.90978 0.91644 0.90279 0.90788 0.94177 0.94637 0.92284 0.89132 0.87509 0.83650 0.84469 0.84331 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -6.91 5.02 -251.26 -1.26 -8.17 16 3 C 0.03 0.25 9.57 60.06 0.57 0.83 16 4 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 5 C -0.13 -1.98 5.46 -26.73 -0.15 -2.13 16 6 C 0.12 2.15 5.41 -4.04 -0.02 2.13 16 7 N -0.59 -11.59 2.46 -175.05 -0.43 -12.02 16 8 C 0.23 5.09 4.96 -5.20 -0.03 5.07 16 9 C -0.55 -13.18 9.28 -34.44 -0.32 -13.50 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -22.96 13.29 55.43 0.74 -22.22 16 13 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 17 C 0.52 10.54 7.75 -10.98 -0.09 10.45 16 18 O -0.55 -12.38 16.08 -14.36 -0.23 -12.62 16 19 C 0.04 0.77 3.77 36.01 0.14 0.91 16 20 O -0.29 -5.16 9.67 -39.50 -0.38 -5.54 16 21 C 0.13 1.99 6.69 -39.23 -0.26 1.73 16 22 C -0.18 -2.56 9.04 -39.44 -0.36 -2.92 16 23 C -0.11 -1.42 10.02 -39.53 -0.40 -1.82 16 24 C 0.05 0.62 7.30 -39.42 -0.29 0.34 16 25 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 26 C -0.12 -1.36 10.02 -39.53 -0.40 -1.76 16 27 C -0.13 -1.66 9.99 -39.44 -0.39 -2.05 16 28 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 30 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.22 16 32 H 0.07 0.59 8.12 -51.93 -0.42 0.16 16 33 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.07 0.95 8.06 -51.92 -0.42 0.53 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.02 6.55 -51.92 -0.34 0.68 16 38 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 41 H 0.04 0.78 6.44 -51.93 -0.33 0.44 16 42 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 43 H 0.09 1.47 6.91 -51.93 -0.36 1.11 16 44 H 0.11 1.93 7.53 -51.93 -0.39 1.54 16 45 H 0.15 2.04 6.30 -52.49 -0.33 1.71 16 46 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 47 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 48 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 402.66 15.07 6.07 6.07 Total: -1.00 -28.24 402.66 -9.52 -37.76 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -7.50 Total: 3.66 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.54 Total: 0.43 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: -0.95 Total: -42.41 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.61 Total: -18.16 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.24 -9.52 -37.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130808645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.009 kcal (2) G-P(sol) polarization free energy of solvation -28.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds