Wall clock time and date at job start Tue Mar 31 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00150 * 2 1 4 4 C 1.46901 * 110.99857 * 123.95071 * 2 1 3 5 5 C 1.53002 * 109.47107 * 66.05180 * 4 2 1 6 6 C 1.53002 * 109.47125 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.46814 * 179.97438 * 6 5 4 8 8 C 1.46491 * 119.99970 * 269.99469 * 7 6 5 9 9 C 1.50704 * 109.47678 * 270.00361 * 8 7 6 10 10 H 1.07998 * 119.99396 * 0.02562 * 9 8 7 11 11 C 1.37870 * 120.00418 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99746 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00148 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47190 * 60.00394 * 13 11 9 15 15 H 1.48505 * 109.47319 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47557 * 300.00172 * 13 11 9 17 17 C 1.34779 * 119.99737 * 90.00031 * 7 6 5 18 18 O 1.21283 * 119.99998 * 359.97438 * 17 7 6 19 19 C 1.50700 * 119.99838 * 179.97438 * 17 7 6 20 20 O 1.42895 * 109.46892 * 179.97438 * 19 17 7 21 21 C 1.35951 * 116.99758 * 179.97438 * 20 19 17 22 22 C 1.38708 * 120.03040 * 0.28885 * 21 20 19 23 23 C 1.38147 * 119.96935 * 180.25012 * 22 21 20 24 24 C 1.38455 * 120.02958 * 359.46222 * 23 22 21 25 25 F 1.35101 * 119.97206 * 180.29906 * 24 23 22 26 26 C 1.38452 * 120.06193 * 0.28172 * 24 23 22 27 27 C 1.38156 * 120.03063 * 359.97438 * 26 24 23 28 28 H 1.08996 * 109.47386 * 296.04558 * 1 2 3 29 29 H 1.09005 * 109.46940 * 56.05353 * 1 2 3 30 30 H 1.09004 * 109.46965 * 176.04567 * 1 2 3 31 31 H 1.09006 * 109.47119 * 183.95197 * 3 2 1 32 32 H 1.08994 * 109.46989 * 303.95174 * 3 2 1 33 33 H 1.08995 * 109.47186 * 63.95101 * 3 2 1 34 34 H 1.08990 * 109.47374 * 306.04793 * 4 2 1 35 35 H 1.09008 * 109.47047 * 186.04347 * 4 2 1 36 36 H 1.08998 * 109.47626 * 59.99751 * 5 4 2 37 37 H 1.09008 * 109.46487 * 299.99510 * 5 4 2 38 38 H 1.09003 * 109.47224 * 59.99831 * 6 5 4 39 39 H 1.08998 * 109.47075 * 299.99579 * 6 5 4 40 40 H 1.09007 * 109.47463 * 30.00813 * 8 7 6 41 41 H 1.09002 * 109.46885 * 150.00288 * 8 7 6 42 42 H 0.97005 * 120.00221 * 180.02562 * 12 11 9 43 43 H 1.09005 * 109.46403 * 60.00348 * 19 17 7 44 44 H 1.08995 * 109.47035 * 300.00415 * 19 17 7 45 45 H 1.07998 * 120.01328 * 0.02562 * 22 21 20 46 46 H 1.08002 * 119.98838 * 179.74746 * 23 22 21 47 47 H 1.07997 * 119.98751 * 179.97438 * 26 24 23 48 48 H 1.07999 * 120.02057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 6 2.1792 -3.0403 2.1556 7 7 1.8302 -4.4541 1.9957 8 6 0.5733 -4.9653 2.5478 9 6 0.8013 -5.4415 3.9593 10 1 1.7842 -5.3700 4.4011 11 6 -0.2450 -5.9673 4.6871 12 7 -1.4420 -6.0538 4.1493 13 14 0.0380 -6.5582 6.4364 14 1 0.5212 -5.4273 7.2688 15 1 -1.2363 -7.0762 6.9961 16 1 1.0539 -7.6412 6.4349 17 6 2.6656 -5.2845 1.3407 18 8 3.7061 -4.8612 0.8833 19 6 2.3069 -6.7390 1.1767 20 8 3.3427 -7.4063 0.4530 21 6 3.1741 -8.7347 0.2179 22 6 2.0324 -9.3801 0.6695 23 6 1.8647 -10.7310 0.4345 24 6 2.8305 -11.4384 -0.2612 25 9 2.6625 -12.7583 -0.4956 26 6 3.9681 -10.7943 -0.7171 27 6 4.1408 -9.4445 -0.4789 28 1 -0.3634 0.4512 0.9233 29 1 -0.3633 0.5739 -0.8526 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0828 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8524 33 1 1.7043 1.8723 0.9232 34 1 1.5610 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1757 36 1 2.0658 -2.6214 0.0452 37 1 0.5471 -2.3475 0.9324 38 1 1.7444 -2.6614 3.0806 39 1 3.2634 -2.9354 2.1941 40 1 -0.1731 -4.1708 2.5485 41 1 0.2192 -5.7957 1.9370 42 1 -2.1783 -6.4234 4.6614 43 1 1.3689 -6.8221 0.6276 44 1 2.1951 -7.1985 2.1587 45 1 1.2766 -8.8275 1.2078 46 1 0.9778 -11.2348 0.7895 47 1 4.7208 -11.3473 -1.2593 48 1 5.0281 -8.9421 -0.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130808645.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:33 Heat of formation + Delta-G solvation = -103.730234 kcal Electronic energy + Delta-G solvation = -29039.531978 eV Core-core repulsion = 24815.922812 eV Total energy + Delta-G solvation = -4223.609166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.82354 -41.48703 -40.47933 -38.68982 -38.08328 -36.88206 -34.79649 -33.20440 -32.29108 -30.87058 -29.32040 -29.22215 -28.47823 -26.80754 -24.96536 -24.28351 -23.70286 -22.99809 -21.79086 -20.22300 -19.50716 -18.67732 -18.40261 -18.04868 -17.44101 -17.32355 -17.04105 -16.53699 -16.50564 -16.25976 -16.15657 -15.83925 -15.60987 -15.28061 -15.07881 -14.83491 -14.57852 -14.33607 -14.12422 -13.97537 -13.61140 -13.49488 -13.29871 -13.27083 -13.15985 -13.09400 -12.74147 -12.64397 -12.59520 -12.41639 -12.33728 -12.08124 -11.95806 -11.88108 -11.73552 -11.49506 -10.84400 -10.57063 -10.20273 -9.56222 -9.31396 -9.15770 -8.22451 -6.37013 0.14531 0.17115 1.42575 1.44503 1.49783 1.56945 1.61396 2.37772 2.54519 2.61540 3.05021 3.08887 3.29778 3.51438 3.73338 3.81053 3.93470 3.99014 4.12326 4.13290 4.22346 4.23648 4.32355 4.39348 4.45287 4.51015 4.56894 4.61404 4.66825 4.74974 4.79926 4.85728 4.90332 5.00826 5.02019 5.10749 5.11640 5.13103 5.16920 5.23124 5.27114 5.60108 5.68111 5.78022 6.01299 6.05347 6.11953 6.24069 6.45760 6.75598 7.17849 7.36506 8.82634 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008010 B = 0.003184 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3494.817379 B = 8792.753194 C =11484.395306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.565 5.565 3 C 0.025 3.975 4 C 0.065 3.935 5 C -0.114 4.114 6 C 0.122 3.878 7 N -0.590 5.590 8 C 0.249 3.751 9 C -0.551 4.551 10 H 0.054 0.946 11 C 0.031 3.969 12 N -0.914 5.914 13 Si 0.949 3.051 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.272 1.272 17 C 0.516 3.484 18 O -0.576 6.576 19 C 0.053 3.947 20 O -0.309 6.309 21 C 0.105 3.895 22 C -0.187 4.187 23 C -0.112 4.112 24 C 0.045 3.955 25 F -0.146 7.146 26 C -0.104 4.104 27 C -0.126 4.126 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.029 0.971 41 H 0.034 0.966 42 H 0.269 0.731 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.141 0.859 46 H 0.153 0.847 47 H 0.170 0.830 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 1.115 -7.692 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.001 4.001 7 N -0.321 5.321 8 C 0.128 3.872 9 C -0.590 4.590 10 H 0.072 0.928 11 C -0.171 4.171 12 N -0.553 5.553 13 Si 0.775 3.225 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.198 1.198 17 C 0.304 3.696 18 O -0.457 6.457 19 C -0.024 4.024 20 O -0.222 6.222 21 C 0.059 3.941 22 C -0.206 4.206 23 C -0.131 4.131 24 C 0.025 3.975 25 F -0.124 7.124 26 C -0.122 4.122 27 C -0.145 4.145 28 H 0.047 0.953 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.159 0.841 46 H 0.171 0.829 47 H 0.188 0.812 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.106 1.152 -8.374 9.875 hybrid contribution -0.860 -0.188 1.957 2.146 sum 4.245 0.964 -6.417 7.754 Atomic orbital electron populations 1.22447 0.86898 1.02290 1.01020 1.61956 1.08754 1.14934 1.43328 1.22421 1.01034 0.87707 1.01116 1.21962 1.00452 0.92291 0.91620 1.21761 1.00856 0.94716 0.97980 1.21357 1.00594 0.79497 0.98610 1.48085 1.21765 1.09031 1.53186 1.19206 0.80173 0.94830 0.92972 1.21626 0.95816 1.42226 0.99323 0.92793 1.25524 0.94638 0.95398 1.01527 1.69980 1.01082 1.45378 1.38821 0.85740 0.77508 0.78831 0.80440 1.19910 1.20761 1.19753 1.20147 0.83483 0.87808 0.78155 1.90624 1.25937 1.78210 1.50964 1.22484 0.90677 0.90735 0.98545 1.86086 1.45117 1.19517 1.71461 1.19435 0.95276 0.82811 0.96549 1.21343 0.98639 0.95722 1.04904 1.21126 0.99796 0.93707 0.98428 1.17727 0.97570 0.78294 1.03868 1.91471 1.95783 1.32016 1.93171 1.21178 0.97115 0.93772 1.00175 1.20507 0.99739 0.93306 1.00932 0.95315 0.90153 0.92051 0.91016 0.90276 0.95205 0.94053 0.90291 0.92866 0.92101 0.90010 0.91083 0.95324 0.94800 0.92206 0.87933 0.88062 0.84086 0.82939 0.81219 0.82782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.32 127.69 1.19 1.66 16 2 N -0.57 -13.66 5.02 -948.86 -4.76 -18.42 16 3 C 0.03 0.46 9.57 127.69 1.22 1.68 16 4 C 0.07 1.68 4.96 86.30 0.43 2.10 16 5 C -0.11 -3.53 5.46 30.60 0.17 -3.37 16 6 C 0.12 4.28 5.41 86.38 0.47 4.75 16 7 N -0.59 -23.58 2.46 -826.13 -2.03 -25.61 16 8 C 0.25 10.95 4.96 85.64 0.43 11.37 16 9 C -0.55 -26.71 9.28 25.60 0.24 -26.47 16 10 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 11 C 0.03 1.50 5.46 84.65 0.46 1.97 16 12 N -0.91 -47.13 13.29 21.44 0.28 -46.85 16 13 Si 0.95 39.70 29.54 68.60 2.03 41.73 16 14 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 15 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 17 C 0.52 21.28 7.75 87.66 0.68 21.96 16 18 O -0.58 -26.40 16.08 16.00 0.26 -26.14 16 19 C 0.05 1.94 3.77 71.24 0.27 2.21 16 20 O -0.31 -11.09 9.67 -73.96 -0.72 -11.81 16 21 C 0.10 3.16 6.69 22.50 0.15 3.31 16 22 C -0.19 -5.27 9.04 22.36 0.20 -5.07 16 23 C -0.11 -2.78 10.02 22.30 0.22 -2.56 16 24 C 0.04 1.07 7.30 22.37 0.16 1.23 16 25 F -0.15 -3.52 17.27 44.97 0.78 -2.74 16 26 C -0.10 -2.21 10.02 22.30 0.22 -1.99 16 27 C -0.13 -3.13 9.99 22.36 0.22 -2.91 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 1.48 8.12 -2.38 -0.02 1.46 16 30 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 31 H 0.07 1.26 8.12 -2.38 -0.02 1.24 16 32 H 0.08 1.24 8.12 -2.39 -0.02 1.23 16 33 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.04 1.01 8.12 -2.39 -0.02 0.99 16 35 H 0.08 1.95 8.06 -2.38 -0.02 1.93 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 1.93 6.55 -2.38 -0.02 1.91 16 38 H 0.08 2.79 8.07 -2.39 -0.02 2.77 16 39 H 0.07 2.53 7.42 -2.39 -0.02 2.51 16 40 H 0.03 1.33 8.07 -2.38 -0.02 1.31 16 41 H 0.03 1.51 6.44 -2.39 -0.02 1.49 16 42 H 0.27 13.27 8.31 -92.70 -0.77 12.50 16 43 H 0.10 3.40 6.91 -2.38 -0.02 3.39 16 44 H 0.10 3.76 7.53 -2.39 -0.02 3.74 16 45 H 0.14 4.01 6.30 -2.91 -0.02 3.99 16 46 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 47 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 48 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -59.06 402.66 3.52 -55.55 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.95 Total: 24.42 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 6.73 Total: 9.88 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -6.51 Total: -90.88 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.46 Total: -37.95 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.78 Total: -2.74 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -59.06 3.52 -55.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130808645.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.184 kcal (2) G-P(sol) polarization free energy of solvation -59.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds