Wall clock time and date at job start Tue Mar 31 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46891 * 111.00283 * 2 1 4 4 C 1.53001 * 109.47149 * 199.81085 * 3 2 1 5 5 O 1.42904 * 109.46835 * 65.10449 * 4 3 2 6 6 C 1.35954 * 116.99611 * 179.97438 * 5 4 3 7 7 C 1.38660 * 120.06687 * 359.97438 * 6 5 4 8 8 C 1.38185 * 119.97146 * 180.02562 * 7 6 5 9 9 C 1.38261 * 120.09446 * 0.02562 * 8 7 6 10 10 C 1.38261 * 120.12426 * 359.97438 * 9 8 7 11 11 C 1.38323 * 120.03172 * 0.02562 * 10 9 8 12 12 F 1.35099 * 120.04780 * 180.02562 * 11 10 9 13 13 C 1.46902 * 111.00105 * 123.95592 * 2 1 3 14 14 C 1.53008 * 109.46871 * 66.04112 * 13 2 1 15 15 C 1.50705 * 109.46734 * 179.97438 * 14 13 2 16 16 O 1.21282 * 120.00226 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99732 * 179.97438 * 15 14 13 18 18 C 1.46505 * 119.99881 * 0.02562 * 17 15 14 19 19 C 1.46503 * 119.99840 * 179.97438 * 17 15 14 20 20 C 1.50701 * 109.46671 * 90.00266 * 19 17 15 21 21 H 1.07997 * 120.00273 * 0.02562 * 20 19 17 22 22 C 1.37886 * 119.99370 * 179.97438 * 20 19 17 23 23 N 1.31510 * 120.00355 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99523 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46804 * 60.00221 * 24 22 20 26 26 H 1.48499 * 109.46786 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47079 * 299.99821 * 24 22 20 28 28 H 1.08994 * 109.47361 * 54.02371 * 1 2 3 29 29 H 1.08998 * 109.47614 * 174.03225 * 1 2 3 30 30 H 1.09002 * 109.46701 * 294.02707 * 1 2 3 31 31 H 1.09002 * 109.47535 * 79.81189 * 3 2 1 32 32 H 1.08999 * 109.47142 * 319.81320 * 3 2 1 33 33 H 1.08993 * 109.47162 * 305.10575 * 4 3 2 34 34 H 1.09000 * 109.47123 * 185.09737 * 4 3 2 35 35 H 1.07997 * 120.01365 * 0.04506 * 7 6 5 36 36 H 1.07993 * 119.94795 * 180.27543 * 8 7 6 37 37 H 1.07994 * 119.93781 * 179.97438 * 9 8 7 38 38 H 1.07999 * 119.97773 * 180.02562 * 10 9 8 39 39 H 1.08997 * 109.47128 * 186.04020 * 13 2 1 40 40 H 1.08999 * 109.47353 * 306.04743 * 13 2 1 41 41 H 1.08997 * 109.47170 * 299.99882 * 14 13 2 42 42 H 1.08993 * 109.46974 * 60.00453 * 14 13 2 43 43 H 1.09000 * 109.46529 * 90.00171 * 18 17 15 44 44 H 1.08998 * 109.46455 * 209.99956 * 18 17 15 45 45 H 1.08993 * 109.47114 * 329.99616 * 18 17 15 46 46 H 1.09000 * 109.47087 * 210.00102 * 19 17 15 47 47 H 1.08999 * 109.47060 * 330.00694 * 19 17 15 48 48 H 0.96997 * 119.99949 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 3.4453 1.3610 -0.4889 5 8 3.4843 0.9433 -1.8550 6 6 4.7069 0.8800 -2.4463 7 6 5.8445 1.2133 -1.7270 8 6 7.0861 1.1487 -2.3301 9 6 7.1959 0.7526 -3.6502 10 6 6.0641 0.4194 -4.3711 11 6 4.8187 0.4822 -3.7725 12 9 3.7126 0.1561 -4.4764 13 6 1.9955 -0.7660 1.1376 14 6 1.6314 -2.2427 0.9703 15 6 2.1720 -3.0286 2.1370 16 8 2.7875 -2.4633 3.0159 17 7 1.9707 -4.3596 2.2041 18 6 1.2267 -5.0423 1.1426 19 6 2.4968 -5.1237 3.3380 20 6 1.4657 -5.1667 4.4363 21 1 0.5138 -4.6745 4.3029 22 6 1.7375 -5.8354 5.6111 23 7 2.8966 -6.4352 5.7734 24 14 0.4598 -5.8880 6.9728 25 1 -0.7757 -6.5385 6.4673 26 1 0.9930 -6.6627 8.1221 27 1 0.1468 -4.5043 7.4117 28 1 -0.3634 0.6037 -0.8316 29 1 -0.3634 -1.0220 -0.1068 30 1 -0.3633 0.4184 0.9387 31 1 1.9561 1.7757 1.0115 32 1 1.3928 1.9919 -0.6631 33 1 4.0289 0.6699 0.1192 34 1 3.8647 2.3635 -0.4034 35 1 5.7603 1.5229 -0.6958 36 1 7.9723 1.4041 -1.7683 37 1 8.1674 0.7035 -4.1192 38 1 6.1526 0.1099 -5.4020 39 1 3.0798 -0.6612 1.1755 40 1 1.5612 -0.3874 2.0628 41 1 0.5471 -2.3475 0.9323 42 1 2.0657 -2.6214 0.0451 43 1 1.9189 -5.3701 0.3670 44 1 0.7114 -5.9078 1.5592 45 1 0.4966 -4.3571 0.7122 46 1 2.7273 -6.1393 3.0161 47 1 3.4032 -4.6455 3.7091 48 1 3.0876 -6.9059 6.5997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131004164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:48 Heat of formation + Delta-G solvation = -82.769608 kcal Electronic energy + Delta-G solvation = -28998.893500 eV Core-core repulsion = 24776.193255 eV Total energy + Delta-G solvation = -4222.700245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.89544 -40.25034 -39.15148 -38.06237 -37.02485 -34.77929 -32.67549 -31.77516 -30.96738 -30.41592 -29.21867 -27.81265 -26.11398 -25.52116 -24.27980 -22.93186 -22.69591 -21.98045 -20.59900 -18.70695 -18.33369 -17.31597 -16.82658 -16.73226 -16.52802 -16.32182 -15.75473 -15.44027 -15.29442 -15.18937 -14.76347 -14.59954 -14.51841 -14.41668 -14.07468 -13.61460 -13.24572 -13.03785 -12.73049 -12.49573 -12.44757 -12.20379 -12.13190 -12.07020 -11.86633 -11.71706 -11.67077 -11.49921 -11.23099 -11.15582 -11.04092 -10.91425 -10.63638 -10.53184 -10.15674 -9.63790 -9.22744 -8.87628 -8.43845 -8.43194 -8.39649 -7.61950 -6.03946 -4.08768 0.84717 1.00631 2.85580 3.31246 3.31366 3.35530 3.37394 3.47874 3.61908 4.01383 4.13686 4.41086 4.45400 4.52968 4.70107 4.76953 4.88788 4.94302 4.99082 5.06785 5.12384 5.22421 5.28117 5.31254 5.35154 5.37552 5.48167 5.54628 5.64176 5.69117 5.77809 5.78532 5.90112 5.92421 5.95816 6.08098 6.09748 6.11657 6.24951 6.38975 6.89597 6.93816 7.08181 7.13462 7.45397 7.55926 7.92447 8.24258 8.44597 8.90509 9.11566 9.56141 11.04117 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015255 B = 0.002240 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.028491 B =12497.440386 C =13084.400751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.539 5.539 3 C 0.056 3.944 4 C 0.062 3.938 5 O -0.289 6.289 6 C 0.105 3.895 7 C -0.186 4.186 8 C -0.089 4.089 9 C -0.135 4.135 10 C -0.118 4.118 11 C 0.065 3.935 12 F -0.132 7.132 13 C 0.069 3.931 14 C -0.135 4.135 15 C 0.505 3.495 16 O -0.548 6.548 17 N -0.603 5.603 18 C 0.084 3.916 19 C 0.245 3.755 20 C -0.526 4.526 21 H 0.056 0.944 22 C 0.061 3.939 23 N -0.895 5.895 24 Si 0.898 3.102 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.032 0.968 47 H 0.043 0.957 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 17.007 -19.981 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.263 5.263 3 C -0.072 4.072 4 C -0.013 4.013 5 O -0.201 6.201 6 C 0.058 3.942 7 C -0.205 4.205 8 C -0.107 4.107 9 C -0.154 4.154 10 C -0.137 4.137 11 C 0.045 3.955 12 F -0.111 7.111 13 C -0.059 4.059 14 C -0.175 4.175 15 C 0.291 3.709 16 O -0.426 6.426 17 N -0.335 5.335 18 C -0.060 4.060 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.534 5.534 24 Si 0.726 3.274 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.155 0.845 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.589 16.879 -19.898 26.338 hybrid contribution -1.069 0.122 1.591 1.920 sum 2.520 17.001 -18.307 25.110 Atomic orbital electron populations 1.22435 0.87053 1.02783 1.00247 1.61941 1.08072 1.12458 1.43842 1.22121 0.94059 0.90809 1.00187 1.22987 0.98564 0.99272 0.80492 1.86242 1.24623 1.82342 1.26932 1.19095 0.86059 0.97600 0.91465 1.21227 0.91928 1.06343 1.01008 1.21036 0.97050 0.97711 0.94896 1.20911 0.98199 1.01710 0.94555 1.21025 0.90348 1.01196 1.01085 1.17008 0.83703 1.06590 0.88154 1.91507 1.51206 1.90489 1.77897 1.21904 1.00798 0.92434 0.90719 1.21630 1.02264 0.94989 0.98636 1.20311 0.80828 0.82695 0.87080 1.90653 1.42112 1.69161 1.40676 1.48160 1.53956 1.07237 1.24156 1.21636 0.95652 0.98261 0.90477 1.19277 0.95455 0.90509 0.82207 1.21394 1.01405 1.33494 1.00179 0.92600 1.24943 0.95629 0.95324 0.98248 1.69921 1.21970 1.34804 1.26731 0.86560 0.81419 0.78150 0.81290 1.20242 1.21147 1.20227 0.91441 0.90874 0.95500 0.91977 0.89650 0.91244 0.91544 0.84529 0.85118 0.84982 0.84234 0.90245 0.93693 0.89543 0.88868 0.93701 0.90855 0.92411 0.95040 0.93887 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.25 60.07 0.56 0.79 16 2 N -0.54 -6.40 4.64 -242.92 -1.13 -7.53 16 3 C 0.06 0.55 5.39 -3.83 -0.02 0.53 16 4 C 0.06 0.60 4.93 37.16 0.18 0.79 16 5 O -0.29 -3.54 9.95 -19.60 -0.19 -3.74 16 6 C 0.10 1.21 6.69 -39.18 -0.26 0.94 16 7 C -0.19 -1.73 9.04 -39.45 -0.36 -2.09 16 8 C -0.09 -0.70 10.04 -39.59 -0.40 -1.09 16 9 C -0.14 -1.02 10.04 -39.56 -0.40 -1.42 16 10 C -0.12 -1.04 10.02 -39.54 -0.40 -1.43 16 11 C 0.07 0.75 7.31 -39.30 -0.29 0.47 16 12 F -0.13 -1.74 17.11 2.25 0.04 -1.70 16 13 C 0.07 0.98 4.07 -3.82 -0.02 0.97 16 14 C -0.13 -2.06 4.18 -27.88 -0.12 -2.17 16 15 C 0.50 10.60 7.67 -10.98 -0.08 10.52 16 16 O -0.55 -13.78 15.56 5.56 0.09 -13.69 16 17 N -0.60 -13.08 2.86 -182.95 -0.52 -13.61 16 18 C 0.08 1.37 10.24 59.85 0.61 1.98 16 19 C 0.24 6.53 5.16 -5.19 -0.03 6.50 16 20 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 21 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 23 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 24 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H 0.07 0.60 7.93 -51.93 -0.41 0.19 16 29 H 0.07 0.75 6.57 -51.93 -0.34 0.40 16 30 H 0.03 0.27 8.13 -51.93 -0.42 -0.15 16 31 H 0.06 0.54 8.00 -51.93 -0.42 0.13 16 32 H 0.09 0.74 7.80 -51.93 -0.40 0.34 16 33 H 0.07 0.71 6.19 -51.93 -0.32 0.39 16 34 H 0.07 0.48 7.66 -51.93 -0.40 0.09 16 35 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.14 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.08 1.19 6.53 -51.93 -0.34 0.85 16 40 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.09 1.18 5.86 -51.93 -0.30 0.88 16 42 H 0.09 1.33 8.11 -51.93 -0.42 0.91 16 43 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 45 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 46 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 47 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 398.71 15.07 6.01 6.01 Total: -1.00 -35.04 398.71 -8.75 -43.78 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.32 Total: -1.87 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.43 Total: 1.49 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.91 Total: -47.26 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.11 Total: -17.43 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.04 -8.75 -43.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131004164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.986 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds