Wall clock time and date at job start Tue Mar 31 2020 21:19:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.47186 * 2 1
4 4 C 1.53006 * 109.46723 * 119.99518 * 2 1 3
5 5 S 1.81402 * 109.46752 * 185.00214 * 4 2 1
6 6 C 1.81408 * 102.99837 * 179.97438 * 5 4 2
7 7 O 1.42106 * 109.47180 * 63.61342 * 5 4 2
8 8 N 1.46893 * 109.47446 * 239.99300 * 2 1 3
9 9 C 1.46901 * 111.00386 * 306.05006 * 8 2 1
10 10 C 1.46899 * 110.99879 * 70.00231 * 8 2 1
11 11 C 1.50698 * 109.47070 * 169.99877 * 10 8 2
12 12 C 1.38288 * 119.92407 * 90.00087 * 11 10 8
13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10
14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11
15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12
16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13
17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13
18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14
19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15
20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15
21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17
23 23 H 1.48505 * 109.47312 * 89.99705 * 22 20 18
24 24 H 1.48494 * 109.47098 * 209.99537 * 22 20 18
25 25 H 1.48499 * 109.47266 * 329.99823 * 22 20 18
26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12
27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13
28 28 H 1.08999 * 109.46775 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47360 * 300.00183 * 1 2 3
30 30 H 1.09001 * 109.46460 * 60.00739 * 1 2 3
31 31 H 1.09002 * 109.47216 * 304.99733 * 4 2 1
32 32 H 1.08998 * 109.47187 * 65.00465 * 4 2 1
33 33 H 1.08998 * 109.47289 * 59.99729 * 6 5 4
34 34 H 1.08996 * 109.46900 * 180.02562 * 6 5 4
35 35 H 1.09002 * 109.47231 * 300.00027 * 6 5 4
36 36 H 1.08998 * 109.47587 * 183.95469 * 9 8 2
37 37 H 1.09005 * 109.46551 * 303.95530 * 9 8 2
38 38 H 1.08991 * 109.47088 * 63.94706 * 9 8 2
39 39 H 1.09001 * 109.47298 * 50.00225 * 10 8 2
40 40 H 1.09003 * 109.47252 * 289.99826 * 10 8 2
41 41 H 1.08002 * 119.96530 * 359.97438 * 12 11 10
42 42 H 1.08000 * 120.03725 * 180.29787 * 13 12 11
43 43 H 1.09003 * 109.46748 * 90.00479 * 16 15 14
44 44 H 1.09000 * 109.47356 * 210.00064 * 16 15 14
45 45 H 1.09000 * 109.47257 * 330.00749 * 16 15 14
46 46 H 1.08994 * 109.47318 * 210.00032 * 17 15 14
47 47 H 1.09001 * 109.47009 * 329.99755 * 17 15 14
48 48 H 0.96992 * 120.00096 * 180.02562 * 21 20 18
49 49 H 1.07998 * 120.04186 * 180.02562 * 26 14 13
50 50 H 1.08002 * 119.96339 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2494
5 16 3.8478 -0.5931 1.3258
6 6 4.2565 -1.4914 2.8480
7 8 4.2205 0.7709 1.4669
8 7 2.0197 -0.6926 -1.1993
9 6 1.4344 -2.0356 -1.3076
10 6 1.7531 0.0970 -2.4089
11 6 2.4776 -0.5166 -3.5792
12 6 1.8525 -1.4800 -4.3495
13 6 2.5114 -2.0399 -5.4264
14 6 3.8056 -1.6385 -5.7320
15 7 4.4750 -2.2031 -6.8201
16 6 3.8125 -3.2202 -7.6403
17 6 5.8397 -1.7781 -7.1412
18 6 6.8239 -2.6506 -6.4054
19 1 6.4682 -3.4427 -5.7631
20 6 8.1782 -2.4376 -6.5522
21 7 8.6112 -1.4734 -7.3347
22 14 9.3980 -3.5195 -5.6407
23 1 9.7434 -4.6936 -6.4819
24 1 10.6282 -2.7409 -5.3484
25 1 8.7920 -3.9843 -4.3671
26 6 4.4326 -0.6743 -4.9530
27 6 3.7680 -0.1185 -3.8774
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3632 0.5137 -0.8901
31 1 1.6053 -0.2616 2.1371
32 1 1.7516 -1.7714 1.2058
33 1 3.9127 -2.5224 2.7649
34 1 5.3360 -1.4790 2.9984
35 1 3.7664 -1.0122 3.6954
36 1 1.8666 -2.5523 -2.1645
37 1 1.6466 -2.5988 -0.3988
38 1 0.3557 -1.9522 -1.4397
39 1 2.1027 1.1187 -2.2604
40 1 0.6815 0.1051 -2.6087
41 1 0.8462 -1.7917 -4.1114
42 1 2.0208 -2.7888 -6.0305
43 1 3.2749 -2.7358 -8.4555
44 1 4.5597 -3.8993 -8.0507
45 1 3.1097 -3.7820 -7.0249
46 1 6.0054 -1.8689 -8.2147
47 1 5.9777 -0.7400 -6.8389
48 1 9.5639 -1.3238 -7.4382
49 1 5.4386 -0.3597 -5.1881
50 1 4.2547 0.6315 -3.2716
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000131004647.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:19:46
Heat of formation + Delta-G solvation = 5.196147 kcal
Electronic energy + Delta-G solvation = -27407.648606 eV
Core-core repulsion = 23754.976019 eV
Total energy + Delta-G solvation = -3652.672587 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-39.39335 -38.22229 -35.72195 -35.64079 -32.83639 -32.16370 -30.42951 -29.55291
-29.11384 -27.84498 -27.68839 -26.94810 -25.26127 -23.73854 -22.13979 -21.42255
-19.96970 -19.49439 -17.55794 -16.63984 -16.47238 -16.42373 -15.74013 -15.38345
-15.19159 -14.71012 -14.49905 -14.30642 -14.03397 -13.93798 -13.68874 -13.60904
-13.13566 -13.10423 -12.91512 -12.83755 -12.70297 -12.43097 -12.20977 -12.12700
-11.79173 -11.66886 -11.57378 -11.40760 -11.32412 -11.20969 -10.99333 -10.90301
-10.66130 -10.62721 -10.22148 -10.19791 -9.86311 -9.71927 -8.82364 -8.48065
-8.42403 -8.21955 -8.09428 -6.43619 -5.98926 -4.14649 1.44905 2.14751
2.23980 2.61487 3.28817 3.36107 3.40289 3.70650 3.92304 4.18168
4.44039 4.52252 4.66139 4.77925 4.93447 4.99903 5.07454 5.14320
5.19454 5.24126 5.24839 5.38373 5.50136 5.51085 5.55473 5.60874
5.65634 5.72813 5.75114 5.82855 5.86836 5.92318 6.05368 6.09579
6.11395 6.29761 6.42463 6.47587 6.67589 6.91309 7.01501 7.03196
7.11173 7.24999 7.30948 7.41685 7.64299 7.83801 8.18202 8.29351
8.51787 8.94379 9.52281 10.98461
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.010537 B = 0.003136 C = 0.002593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2656.751937 B = 8926.694429 C =10794.240238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.099 3.901
3 H 0.085 0.915
4 C -0.442 4.442
5 S 1.277 4.723
6 C -0.504 4.504
7 O -0.852 6.852
8 N -0.531 5.531
9 C 0.014 3.986
10 C 0.110 3.890
11 C -0.167 4.167
12 C -0.066 4.066
13 C -0.223 4.223
14 C 0.242 3.758
15 N -0.616 5.616
16 C 0.099 3.901
17 C 0.249 3.751
18 C -0.531 4.531
19 H 0.060 0.940
20 C 0.062 3.938
21 N -0.895 5.895
22 Si 0.896 3.104
23 H -0.281 1.281
24 H -0.285 1.285
25 H -0.272 1.272
26 C -0.188 4.188
27 C -0.051 4.051
28 H 0.063 0.937
29 H 0.056 0.944
30 H 0.059 0.941
31 H 0.084 0.916
32 H 0.118 0.882
33 H 0.109 0.891
34 H 0.103 0.897
35 H 0.073 0.927
36 H 0.082 0.918
37 H 0.066 0.934
38 H 0.026 0.974
39 H 0.074 0.926
40 H 0.036 0.964
41 H 0.104 0.896
42 H 0.111 0.889
43 H 0.034 0.966
44 H 0.066 0.934
45 H 0.054 0.946
46 H 0.029 0.971
47 H 0.036 0.964
48 H 0.264 0.736
49 H 0.131 0.869
50 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.293 -2.107 13.445 21.229
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.240 4.240
2 C -0.011 4.011
3 H 0.104 0.896
4 C -0.579 4.579
5 S 1.474 4.526
6 C -0.661 4.661
7 O -0.848 6.848
8 N -0.255 5.255
9 C -0.134 4.134
10 C -0.017 4.017
11 C -0.170 4.170
12 C -0.086 4.086
13 C -0.246 4.246
14 C 0.135 3.865
15 N -0.322 5.322
16 C -0.045 4.045
17 C 0.129 3.871
18 C -0.569 4.569
19 H 0.078 0.922
20 C -0.141 4.141
21 N -0.534 5.534
22 Si 0.723 3.277
23 H -0.207 1.207
24 H -0.211 1.211
25 H -0.196 1.196
26 C -0.210 4.210
27 C -0.071 4.071
28 H 0.082 0.918
29 H 0.075 0.925
30 H 0.078 0.922
31 H 0.103 0.897
32 H 0.136 0.864
33 H 0.128 0.872
34 H 0.122 0.878
35 H 0.092 0.908
36 H 0.101 0.899
37 H 0.085 0.915
38 H 0.045 0.955
39 H 0.093 0.907
40 H 0.054 0.946
41 H 0.122 0.878
42 H 0.129 0.871
43 H 0.053 0.947
44 H 0.085 0.915
45 H 0.073 0.927
46 H 0.047 0.953
47 H 0.054 0.946
48 H 0.073 0.927
49 H 0.149 0.851
50 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -14.849 -1.703 12.620 19.562
hybrid contribution -1.100 0.236 2.265 2.529
sum -15.949 -1.467 14.884 21.865
Atomic orbital electron populations
1.22443 0.97038 1.02441 1.02113 1.21253 0.93241 0.97854 0.88714
0.89641 1.27738 1.21496 1.07005 1.01659 1.71603 0.87242 0.94923
0.98821 1.27808 1.08393 1.11448 1.18439 1.93075 1.75971 1.33545
1.82189 1.62285 1.58278 1.03227 1.01691 1.22553 0.97110 0.90563
1.03163 1.20857 0.97064 0.96376 0.87400 1.19084 0.96079 1.02865
0.98953 1.20487 0.98088 0.95558 0.94430 1.20507 0.95331 1.06390
1.02368 1.17954 0.90527 0.90894 0.87133 1.47102 1.16122 1.40925
1.28015 1.21461 0.97394 0.91508 0.94174 1.19282 0.75623 0.95987
0.96193 1.21576 0.90798 1.16720 1.27850 0.92188 1.24961 0.98356
0.95422 0.95326 1.69926 1.14870 1.30854 1.37787 0.86528 0.80574
0.80304 0.80272 1.20740 1.21118 1.19634 1.20898 1.01651 1.00576
0.97874 1.20661 0.93163 0.97920 0.95316 0.91848 0.92532 0.92165
0.89672 0.86354 0.87188 0.87796 0.90782 0.89931 0.91517 0.95520
0.90726 0.94563 0.87827 0.87075 0.94728 0.91507 0.92707 0.95323
0.94591 0.92665 0.85091 0.86935
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.47 8.44 37.16 0.31 -1.15 16
2 C 0.10 0.94 2.31 -67.71 -0.16 0.78 16
3 H 0.09 0.96 7.93 -51.93 -0.41 0.55 16
4 C -0.44 -3.54 5.30 37.16 0.20 -3.34 16
5 S 1.28 12.31 13.53 -107.50 -1.46 10.86 16
6 C -0.50 -3.88 10.74 101.05 1.09 -2.79 16
7 O -0.85 -13.76 18.14 -35.23 -0.64 -14.40 16
8 N -0.53 -5.50 4.41 -236.33 -1.04 -6.55 16
9 C 0.01 0.12 8.25 60.07 0.50 0.62 16
10 C 0.11 1.27 4.68 -4.98 -0.02 1.25 16
11 C -0.17 -2.38 4.89 -104.59 -0.51 -2.89 16
12 C -0.07 -0.94 7.95 -39.61 -0.32 -1.25 16
13 C -0.22 -3.63 9.21 -39.38 -0.36 -3.99 16
14 C 0.24 4.69 6.55 -83.79 -0.55 4.14 16
15 N -0.62 -12.81 2.99 -181.00 -0.54 -13.35 16
16 C 0.10 1.68 10.19 59.85 0.61 2.29 16
17 C 0.25 6.13 4.91 -5.19 -0.03 6.10 16
18 C -0.53 -14.19 9.39 -34.44 -0.32 -14.52 16
19 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16
20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
21 N -0.90 -25.43 13.29 55.43 0.74 -24.69 16
22 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16
23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
25 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16
26 C -0.19 -3.66 9.21 -39.38 -0.36 -4.02 16
27 C -0.05 -0.84 9.69 -39.61 -0.38 -1.23 16
28 H 0.06 0.47 6.41 -51.93 -0.33 0.14 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.06 0.50 6.91 -51.93 -0.36 0.14 16
31 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16
32 H 0.12 0.68 6.26 -51.92 -0.33 0.35 16
33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16
34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
35 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16
36 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16
37 H 0.07 0.46 6.21 -51.93 -0.32 0.14 16
38 H 0.03 0.22 6.46 -51.93 -0.34 -0.12 16
39 H 0.07 0.87 7.88 -51.93 -0.41 0.46 16
40 H 0.04 0.39 7.00 -51.93 -0.36 0.02 16
41 H 0.10 1.22 8.03 -52.49 -0.42 0.80 16
42 H 0.11 1.64 6.14 -52.49 -0.32 1.32 16
43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
44 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16
45 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16
46 H 0.03 0.74 8.07 -51.93 -0.42 0.33 16
47 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16
48 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
49 H 0.13 2.86 6.14 -52.49 -0.32 2.54 16
50 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16
LS Contribution 403.50 15.07 6.08 6.08
Total: -1.00 -32.79 403.50 -10.52 -43.31
By element:
Atomic # 1 Polarization: 9.45 SS G_CDS: -8.23 Total: 1.22 kcal
Atomic # 6 Polarization: -18.02 SS G_CDS: -0.41 Total: -18.43 kcal
Atomic # 7 Polarization: -43.74 SS G_CDS: -0.85 Total: -44.59 kcal
Atomic # 8 Polarization: -13.76 SS G_CDS: -0.64 Total: -14.40 kcal
Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal
Atomic # 16 Polarization: 12.31 SS G_CDS: -1.46 Total: 10.86 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -32.79 -10.52 -43.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000131004647.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.509 kcal
(2) G-P(sol) polarization free energy of solvation -32.792 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.521 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.196 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds