Wall clock time and date at job start Tue Mar 31 2020 21:19:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09005 * 109.47186 * 2 1
4 4 C 1.53006 * 109.46723 * 119.99518 * 2 1 3
5 5 S 1.81402 * 109.46752 * 185.00214 * 4 2 1
6 6 C 1.81408 * 102.99837 * 179.97438 * 5 4 2
7 7 O 1.42106 * 109.47180 * 63.61342 * 5 4 2
8 8 N 1.46893 * 109.47446 * 239.99300 * 2 1 3
9 9 C 1.46901 * 111.00386 * 306.05006 * 8 2 1
10 10 C 1.46899 * 110.99879 * 70.00231 * 8 2 1
11 11 C 1.50698 * 109.47070 * 169.99877 * 10 8 2
12 12 C 1.38288 * 119.92407 * 90.00087 * 11 10 8
13 13 C 1.38111 * 120.07382 * 179.69843 * 12 11 10
14 14 C 1.38906 * 119.92343 * 0.28047 * 13 12 11
15 15 N 1.39676 * 120.07171 * 179.97438 * 14 13 12
16 16 C 1.46499 * 120.00261 * 359.97438 * 15 14 13
17 17 C 1.46500 * 120.00062 * 179.97438 * 15 14 13
18 18 C 1.50702 * 109.47458 * 89.99484 * 17 15 14
19 19 H 1.08007 * 119.99580 * 0.02562 * 18 17 15
20 20 C 1.37875 * 120.00251 * 180.02562 * 18 17 15
21 21 N 1.31513 * 120.00212 * 359.97438 * 20 18 17
22 22 Si 1.86799 * 119.99942 * 180.02562 * 20 18 17
23 23 H 1.48505 * 109.47312 * 89.99705 * 22 20 18
24 24 H 1.48494 * 109.47098 * 209.99537 * 22 20 18
25 25 H 1.48499 * 109.47266 * 329.99823 * 22 20 18
26 26 C 1.38908 * 119.85606 * 359.97438 * 14 13 12
27 27 C 1.38112 * 119.92096 * 0.02562 * 26 14 13
28 28 H 1.08999 * 109.46775 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47360 * 300.00183 * 1 2 3
30 30 H 1.09001 * 109.46460 * 60.00739 * 1 2 3
31 31 H 1.09002 * 109.47216 * 304.99733 * 4 2 1
32 32 H 1.08998 * 109.47187 * 65.00465 * 4 2 1
33 33 H 1.08998 * 109.47289 * 59.99729 * 6 5 4
34 34 H 1.08996 * 109.46900 * 180.02562 * 6 5 4
35 35 H 1.09002 * 109.47231 * 300.00027 * 6 5 4
36 36 H 1.08998 * 109.47587 * 183.95469 * 9 8 2
37 37 H 1.09005 * 109.46551 * 303.95530 * 9 8 2
38 38 H 1.08991 * 109.47088 * 63.94706 * 9 8 2
39 39 H 1.09001 * 109.47298 * 50.00225 * 10 8 2
40 40 H 1.09003 * 109.47252 * 289.99826 * 10 8 2
41 41 H 1.08002 * 119.96530 * 359.97438 * 12 11 10
42 42 H 1.08000 * 120.03725 * 180.29787 * 13 12 11
43 43 H 1.09003 * 109.46748 * 90.00479 * 16 15 14
44 44 H 1.09000 * 109.47356 * 210.00064 * 16 15 14
45 45 H 1.09000 * 109.47257 * 330.00749 * 16 15 14
46 46 H 1.08994 * 109.47318 * 210.00032 * 17 15 14
47 47 H 1.09001 * 109.47009 * 329.99755 * 17 15 14
48 48 H 0.96992 * 120.00096 * 180.02562 * 21 20 18
49 49 H 1.07998 * 120.04186 * 180.02562 * 26 14 13
50 50 H 1.08002 * 119.96339 * 180.02562 * 27 26 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0399 -0.7212 1.2494
5 16 3.8478 -0.5931 1.3258
6 6 4.2565 -1.4914 2.8480
7 8 4.2205 0.7709 1.4669
8 7 2.0197 -0.6926 -1.1993
9 6 1.4344 -2.0356 -1.3076
10 6 1.7531 0.0970 -2.4089
11 6 2.4776 -0.5166 -3.5792
12 6 1.8525 -1.4800 -4.3495
13 6 2.5114 -2.0399 -5.4264
14 6 3.8056 -1.6385 -5.7320
15 7 4.4750 -2.2031 -6.8201
16 6 3.8125 -3.2202 -7.6403
17 6 5.8397 -1.7781 -7.1412
18 6 6.8239 -2.6506 -6.4054
19 1 6.4682 -3.4427 -5.7631
20 6 8.1782 -2.4376 -6.5522
21 7 8.6112 -1.4734 -7.3347
22 14 9.3980 -3.5195 -5.6407
23 1 9.7434 -4.6936 -6.4819
24 1 10.6282 -2.7409 -5.3484
25 1 8.7920 -3.9843 -4.3671
26 6 4.4326 -0.6743 -4.9530
27 6 3.7680 -0.1185 -3.8774
28 1 -0.3633 -1.0277 -0.0005
29 1 -0.3634 0.5139 0.8900
30 1 -0.3632 0.5137 -0.8901
31 1 1.6053 -0.2616 2.1371
32 1 1.7516 -1.7714 1.2058
33 1 3.9127 -2.5224 2.7649
34 1 5.3360 -1.4790 2.9984
35 1 3.7664 -1.0122 3.6954
36 1 1.8666 -2.5523 -2.1645
37 1 1.6466 -2.5988 -0.3988
38 1 0.3557 -1.9522 -1.4397
39 1 2.1027 1.1187 -2.2604
40 1 0.6815 0.1051 -2.6087
41 1 0.8462 -1.7917 -4.1114
42 1 2.0208 -2.7888 -6.0305
43 1 3.2749 -2.7358 -8.4555
44 1 4.5597 -3.8993 -8.0507
45 1 3.1097 -3.7820 -7.0249
46 1 6.0054 -1.8689 -8.2147
47 1 5.9777 -0.7400 -6.8389
48 1 9.5639 -1.3238 -7.4382
49 1 5.4386 -0.3597 -5.1881
50 1 4.2547 0.6315 -3.2716
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000131004647.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:19:46
Heat of formation + Delta-G solvation = -16.337146 kcal
Electronic energy + Delta-G solvation = -27408.582360 eV
Core-core repulsion = 23754.976019 eV
Total energy + Delta-G solvation = -3653.606341 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 338.177 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-40.56559 -39.25565 -37.08592 -36.70474 -34.74804 -33.21323 -31.81291 -30.65871
-29.76967 -29.58707 -28.41969 -27.84215 -26.64942 -25.16385 -23.53435 -22.81615
-21.02550 -20.58159 -18.57054 -18.38385 -17.99761 -17.23584 -16.85557 -16.61689
-16.16446 -16.15105 -15.58212 -15.38355 -15.28792 -15.07277 -14.82480 -14.52838
-14.34163 -14.19381 -13.96729 -13.92772 -13.76383 -13.50204 -13.25041 -13.12815
-13.05940 -12.94870 -12.75253 -12.61341 -12.55807 -12.48548 -12.38926 -12.20038
-12.07054 -11.72920 -11.70942 -11.61141 -11.29842 -11.02475 -10.58518 -10.31898
-9.55046 -9.20633 -8.87848 -8.29629 -7.71419 -6.31453 0.71428 0.81760
0.93728 1.41997 1.43908 1.54964 1.92419 2.40270 2.71406 2.90907
3.02657 3.12513 3.44358 3.83231 4.05100 4.15063 4.22721 4.29498
4.31974 4.35613 4.49543 4.51246 4.52051 4.57953 4.61075 4.74068
4.79438 4.81922 4.88864 4.90080 4.94724 4.98050 4.99526 5.07086
5.10508 5.14604 5.21394 5.27389 5.30464 5.42534 5.43963 5.67499
5.76131 5.78246 6.03306 6.13524 6.20995 6.31998 6.32919 6.57845
6.89724 7.03098 7.40676 8.89159
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.010537 B = 0.003136 C = 0.002593
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2656.751937 B = 8926.694429 C =10794.240238
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.099 3.901
3 H 0.059 0.941
4 C -0.428 4.428
5 S 1.274 4.726
6 C -0.493 4.493
7 O -0.929 6.929
8 N -0.542 5.542
9 C 0.009 3.991
10 C 0.112 3.888
11 C -0.149 4.149
12 C -0.054 4.054
13 C -0.215 4.215
14 C 0.213 3.787
15 N -0.633 5.633
16 C 0.099 3.901
17 C 0.267 3.733
18 C -0.538 4.538
19 H 0.053 0.947
20 C 0.010 3.990
21 N -0.930 5.930
22 Si 0.961 3.039
23 H -0.271 1.271
24 H -0.283 1.283
25 H -0.266 1.266
26 C -0.216 4.216
27 C -0.057 4.057
28 H 0.078 0.922
29 H 0.059 0.941
30 H 0.058 0.942
31 H 0.089 0.911
32 H 0.152 0.848
33 H 0.145 0.855
34 H 0.102 0.898
35 H 0.069 0.931
36 H 0.068 0.932
37 H 0.090 0.910
38 H 0.041 0.959
39 H 0.067 0.933
40 H 0.057 0.943
41 H 0.143 0.857
42 H 0.133 0.867
43 H 0.049 0.951
44 H 0.054 0.946
45 H 0.081 0.919
46 H 0.006 0.994
47 H 0.009 0.991
48 H 0.266 0.734
49 H 0.091 0.909
50 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.363 -4.641 15.593 25.291
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C -0.011 4.011
3 H 0.078 0.922
4 C -0.566 4.566
5 S 1.475 4.525
6 C -0.652 4.652
7 O -0.925 6.925
8 N -0.266 5.266
9 C -0.138 4.138
10 C -0.015 4.015
11 C -0.152 4.152
12 C -0.073 4.073
13 C -0.238 4.238
14 C 0.109 3.891
15 N -0.341 5.341
16 C -0.044 4.044
17 C 0.145 3.855
18 C -0.577 4.577
19 H 0.071 0.929
20 C -0.188 4.188
21 N -0.570 5.570
22 Si 0.786 3.214
23 H -0.197 1.197
24 H -0.208 1.208
25 H -0.190 1.190
26 C -0.239 4.239
27 C -0.077 4.077
28 H 0.097 0.903
29 H 0.078 0.922
30 H 0.077 0.923
31 H 0.108 0.892
32 H 0.170 0.830
33 H 0.163 0.837
34 H 0.120 0.880
35 H 0.088 0.912
36 H 0.087 0.913
37 H 0.109 0.891
38 H 0.060 0.940
39 H 0.085 0.915
40 H 0.075 0.925
41 H 0.161 0.839
42 H 0.151 0.849
43 H 0.068 0.932
44 H 0.073 0.927
45 H 0.100 0.900
46 H 0.024 0.976
47 H 0.026 0.974
48 H 0.075 0.925
49 H 0.109 0.891
50 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -17.946 -4.228 14.773 23.626
hybrid contribution -0.301 1.021 1.721 2.024
sum -18.247 -3.208 16.495 24.806
Atomic orbital electron populations
1.22396 0.95396 1.03452 1.02278 1.21205 0.94427 0.96664 0.88775
0.92249 1.27587 1.18918 1.08964 1.01178 1.70662 0.88623 0.92973
1.00219 1.27686 1.08470 1.12698 1.16318 1.92987 1.78462 1.36651
1.84378 1.62200 1.59199 1.03899 1.01268 1.22657 0.97804 0.89442
1.03904 1.20797 0.97653 0.96005 0.86998 1.19376 0.94773 1.01741
0.99270 1.20863 0.99350 0.94207 0.92840 1.20770 0.93760 1.06359
1.02868 1.18205 0.92004 0.91683 0.87233 1.46948 1.14992 1.42596
1.29574 1.21589 0.97350 0.90826 0.94641 1.18746 0.78121 0.94345
0.94300 1.21798 0.91636 1.16575 1.27660 0.92892 1.25804 1.00243
0.96695 0.96105 1.70044 1.15278 1.32429 1.39207 0.85501 0.78063
0.78660 0.79190 1.19685 1.20808 1.19036 1.20740 1.00602 1.02547
1.00016 1.20749 0.94380 0.98018 0.94518 0.90282 0.92184 0.92334
0.89197 0.82987 0.83695 0.87954 0.91158 0.91340 0.89115 0.94013
0.91459 0.92521 0.83923 0.84923 0.93210 0.92677 0.90043 0.97562
0.97351 0.92539 0.89129 0.86752
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.21 8.44 71.98 0.61 -1.60 16
2 C 0.10 1.64 2.31 44.92 0.10 1.74 16
3 H 0.06 1.31 7.93 -2.38 -0.02 1.29 16
4 C -0.43 -5.58 5.30 71.98 0.38 -5.20 16
5 S 1.27 23.45 13.53 -56.49 -0.76 22.68 16
6 C -0.49 -6.43 10.74 113.37 1.22 -5.21 16
7 O -0.93 -31.17 18.14 -148.98 -2.70 -33.88 16
8 N -0.54 -9.75 4.41 -901.62 -3.98 -13.73 16
9 C 0.01 0.12 8.25 127.69 1.05 1.18 16
10 C 0.11 2.34 4.68 85.56 0.40 2.74 16
11 C -0.15 -3.97 4.89 -19.84 -0.10 -4.07 16
12 C -0.05 -1.33 7.95 22.25 0.18 -1.16 16
13 C -0.21 -6.52 9.21 22.40 0.21 -6.32 16
14 C 0.21 8.40 6.55 38.21 0.25 8.65 16
15 N -0.63 -27.18 2.99 -726.57 -2.17 -29.35 16
16 C 0.10 3.32 10.19 127.77 1.30 4.62 16
17 C 0.27 13.99 4.91 85.63 0.42 14.41 16
18 C -0.54 -30.01 9.39 25.60 0.24 -29.77 16
19 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16
20 C 0.01 0.58 5.46 84.65 0.46 1.04 16
21 N -0.93 -54.94 13.29 21.45 0.28 -54.65 16
22 Si 0.96 43.78 29.54 68.60 2.03 45.80 16
23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16
25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16
26 C -0.22 -8.94 9.21 22.40 0.21 -8.74 16
27 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16
28 H 0.08 0.77 6.41 -2.39 -0.02 0.75 16
29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
30 H 0.06 0.77 6.91 -2.39 -0.02 0.75 16
31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16
32 H 0.15 0.96 6.26 -2.39 -0.01 0.94 16
33 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16
34 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16
35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
36 H 0.07 1.15 6.16 -2.39 -0.01 1.14 16
37 H 0.09 0.77 6.21 -2.38 -0.01 0.76 16
38 H 0.04 0.46 6.46 -2.39 -0.02 0.44 16
39 H 0.07 1.51 7.88 -2.39 -0.02 1.49 16
40 H 0.06 0.98 7.00 -2.39 -0.02 0.96 16
41 H 0.14 2.53 8.03 -2.91 -0.02 2.51 16
42 H 0.13 3.43 6.14 -2.91 -0.02 3.41 16
43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
44 H 0.05 1.94 8.07 -2.39 -0.02 1.92 16
45 H 0.08 2.25 6.20 -2.39 -0.01 2.23 16
46 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16
47 H 0.01 0.49 6.20 -2.39 -0.01 0.47 16
48 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16
49 H 0.09 4.41 6.14 -2.91 -0.02 4.39 16
50 H 0.11 3.70 8.06 -2.91 -0.02 3.67 16
Total: -1.00 -76.42 403.50 0.76 -75.66
By element:
Atomic # 1 Polarization: 15.94 SS G_CDS: 0.91 Total: 16.85 kcal
Atomic # 6 Polarization: -36.54 SS G_CDS: 7.15 Total: -29.39 kcal
Atomic # 7 Polarization: -91.87 SS G_CDS: -5.86 Total: -97.73 kcal
Atomic # 8 Polarization: -31.17 SS G_CDS: -2.70 Total: -33.88 kcal
Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal
Atomic # 16 Polarization: 23.45 SS G_CDS: -0.76 Total: 22.68 kcal
Total: -76.42 0.76 -75.66 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000131004647.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.321 kcal
(2) G-P(sol) polarization free energy of solvation -76.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.094 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.757 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.658 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.337 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds