Wall clock time and date at job start Tue Mar 31 2020 20:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00222 * 2 1 4 4 H 1.08999 * 109.46766 * 52.50748 * 3 2 1 5 5 C 1.53001 * 109.46889 * 292.51478 * 3 2 1 6 6 O 1.42901 * 109.47107 * 294.99712 * 5 3 2 7 7 C 1.52997 * 109.47117 * 172.51220 * 3 2 1 8 8 H 1.09002 * 109.47044 * 54.68345 * 7 3 2 9 9 C 1.53002 * 109.47002 * 294.68003 * 7 3 2 10 10 N 1.46901 * 109.46900 * 174.68104 * 7 3 2 11 11 C 1.46896 * 110.99908 * 204.99830 * 10 7 3 12 12 C 1.50703 * 109.46774 * 180.02562 * 11 10 7 13 13 C 1.38287 * 119.92264 * 90.00625 * 12 11 10 14 14 C 1.38108 * 120.06925 * 180.29531 * 13 12 11 15 15 C 1.38912 * 119.92905 * 359.44960 * 14 13 12 16 16 N 1.39666 * 120.07751 * 180.29985 * 15 14 13 17 17 C 1.46495 * 120.00397 * 180.25336 * 16 15 14 18 18 C 1.46505 * 120.00133 * 0.24248 * 16 15 14 19 19 C 1.50705 * 109.46752 * 90.00372 * 18 16 15 20 20 H 1.08002 * 120.00275 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00042 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99632 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47371 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47108 * 120.00205 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00047 * 23 21 19 27 27 C 1.38915 * 119.84533 * 0.54554 * 15 14 13 28 28 C 1.38097 * 119.92659 * 359.72585 * 27 15 14 29 29 H 1.09003 * 109.47491 * 295.39465 * 1 2 3 30 30 H 1.09006 * 109.47292 * 55.39514 * 1 2 3 31 31 H 1.08999 * 109.47554 * 175.39095 * 1 2 3 32 32 H 1.08998 * 109.47485 * 54.99534 * 5 3 2 33 33 H 1.09001 * 109.46856 * 174.99746 * 5 3 2 34 34 H 0.96699 * 114.00148 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46846 * 185.14053 * 9 7 3 36 36 H 1.08997 * 109.47196 * 305.14241 * 9 7 3 37 37 H 1.09001 * 109.46462 * 65.14347 * 9 7 3 38 38 H 1.00903 * 110.99848 * 81.04089 * 10 7 3 39 39 H 1.08993 * 109.47134 * 60.00484 * 11 10 7 40 40 H 1.08998 * 109.47519 * 300.00053 * 11 10 7 41 41 H 1.08000 * 119.96663 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.03313 * 179.72188 * 14 13 12 43 43 H 1.08998 * 109.47676 * 89.99346 * 17 16 15 44 44 H 1.09004 * 109.47497 * 209.99720 * 17 16 15 45 45 H 1.09005 * 109.46665 * 329.99417 * 17 16 15 46 46 H 1.08996 * 109.47313 * 210.00287 * 18 16 15 47 47 H 1.09000 * 109.47046 * 330.00715 * 18 16 15 48 48 H 0.97009 * 119.99843 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.03467 * 179.70796 * 27 15 14 50 50 H 1.08001 * 119.96149 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6944 2.2622 0.8154 5 6 1.7986 2.3886 -1.3326 6 8 2.5743 1.8216 -2.3903 7 6 3.7303 1.9426 0.1880 8 1 4.2603 1.3697 -0.5730 9 6 4.1328 1.4413 1.5764 10 7 4.0778 3.3643 0.0609 11 6 5.4771 3.5292 -0.3544 12 6 5.7961 4.9972 -0.4732 13 6 6.2812 5.6886 0.6218 14 6 6.5688 7.0354 0.5180 15 6 6.3811 7.6930 -0.6912 16 7 6.6769 9.0535 -0.8013 17 6 6.4732 9.7466 -2.0757 18 6 7.1907 9.7877 0.3577 19 6 8.6962 9.7192 0.3686 20 1 9.2180 9.1828 -0.4101 21 6 9.4073 10.3412 1.3728 22 7 8.7718 10.9938 2.3213 23 14 11.2733 10.2569 1.3859 24 1 11.7415 9.4682 0.2179 25 1 11.8314 11.6310 1.3117 26 1 11.7305 9.6039 2.6388 27 6 5.8938 6.9953 -1.7892 28 6 5.6029 5.6500 -1.6769 29 1 -0.3634 0.4407 0.9284 30 1 -0.3634 0.5837 -0.8459 31 1 -0.3634 -1.0243 -0.0826 32 1 0.7420 2.1865 -1.5083 33 1 1.9619 3.4658 -1.2995 34 1 2.3592 2.1701 -3.2663 35 1 5.1894 1.6494 1.7455 36 1 3.5365 1.9504 2.3335 37 1 3.9594 0.3670 1.6390 38 1 3.8950 3.8594 0.9209 39 1 5.6293 3.0447 -1.3188 40 1 6.1326 3.0742 0.3882 41 1 6.4311 5.1758 1.5604 42 1 6.9433 7.5758 1.3748 43 1 5.4613 10.1501 -2.1123 44 1 7.1924 10.5608 -2.1657 45 1 6.6144 9.0447 -2.8977 46 1 6.8748 10.8291 0.2974 47 1 6.8001 9.3419 1.2725 48 1 9.2722 11.4318 3.0277 49 1 5.7423 7.5046 -2.7294 50 1 5.2236 5.1072 -2.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152468431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:23 Heat of formation + Delta-G solvation = -18.590250 kcal Electronic energy + Delta-G solvation = -26824.351273 eV Core-core repulsion = 23170.647230 eV Total energy + Delta-G solvation = -3653.704043 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.13221 -38.15416 -36.46026 -35.46013 -32.86816 -32.14023 -30.43767 -30.02395 -28.95999 -28.40171 -27.79761 -25.61847 -24.08246 -23.39997 -22.15282 -21.47631 -20.88842 -19.57260 -17.69219 -16.88112 -16.54948 -16.38684 -15.57837 -15.41481 -15.25352 -14.97482 -14.56121 -14.37545 -14.07573 -13.88914 -13.72649 -13.59419 -13.43640 -13.28940 -12.93887 -12.85138 -12.75008 -12.56601 -12.20205 -11.98973 -11.78523 -11.73384 -11.42786 -11.34248 -11.26417 -11.20605 -10.92991 -10.70919 -10.62217 -10.28159 -10.22799 -9.91141 -9.85587 -9.75335 -8.85169 -8.52852 -8.38617 -8.25419 -7.82576 -6.47354 -6.03157 -4.19207 1.38648 2.11628 2.23277 2.34495 3.23806 3.32057 3.37111 4.02250 4.14471 4.27905 4.40054 4.41540 4.63045 4.72765 4.79674 4.83878 5.06184 5.12718 5.19709 5.21754 5.29999 5.38134 5.39931 5.43741 5.55922 5.61354 5.63491 5.72517 5.80601 5.84246 5.89620 6.01466 6.02952 6.07522 6.28071 6.40092 6.43743 6.65263 6.91125 6.99548 7.07679 7.20681 7.25064 7.32546 7.44344 7.52792 7.60873 7.79539 8.13937 8.25809 8.48331 8.90336 9.47735 10.93683 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.002085 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.267731 B =13427.245102 C =14096.956302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.243 6.243 3 C -0.041 4.041 4 H 0.093 0.907 5 C 0.094 3.906 6 O -0.555 6.555 7 C 0.109 3.891 8 H 0.093 0.907 9 C -0.186 4.186 10 N -0.675 5.675 11 C 0.120 3.880 12 C -0.172 4.172 13 C -0.067 4.067 14 C -0.188 4.188 15 C 0.241 3.759 16 N -0.616 5.616 17 C 0.098 3.902 18 C 0.249 3.751 19 C -0.530 4.530 20 H 0.060 0.940 21 C 0.060 3.940 22 N -0.895 5.895 23 Si 0.896 3.104 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C -0.223 4.223 28 C -0.050 4.050 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.071 0.929 34 H 0.375 0.625 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.340 0.660 39 H 0.073 0.927 40 H 0.030 0.970 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.263 0.737 49 H 0.112 0.888 50 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.901 -18.037 -6.013 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.017 6.017 3 C -0.171 4.171 4 H 0.112 0.888 5 C 0.014 3.986 6 O -0.360 6.360 7 C -0.002 4.002 8 H 0.111 0.889 9 C -0.245 4.245 10 N -0.305 5.305 11 C -0.008 4.008 12 C -0.175 4.175 13 C -0.087 4.087 14 C -0.211 4.211 15 C 0.134 3.866 16 N -0.321 5.321 17 C -0.046 4.046 18 C 0.129 3.871 19 C -0.569 4.569 20 H 0.078 0.922 21 C -0.142 4.142 22 N -0.534 5.534 23 Si 0.724 3.276 24 H -0.197 1.197 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.246 4.246 28 C -0.070 4.070 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.221 0.779 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.125 0.875 42 H 0.148 0.852 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.073 0.927 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.130 0.870 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.127 -18.833 -5.992 24.888 hybrid contribution 0.383 1.298 0.555 1.463 sum -14.744 -17.535 -5.437 23.546 Atomic orbital electron populations 1.23415 0.95146 1.06268 1.04665 1.86838 1.06174 1.10968 1.97744 1.23318 1.00831 0.93494 0.99431 0.88835 1.22047 0.92225 0.97701 0.86614 1.86514 1.63891 1.67870 1.17712 1.21126 0.91934 0.90217 0.96958 0.88936 1.22587 1.01647 1.02742 0.97507 1.60542 1.22813 1.09039 1.38153 1.20633 0.86991 0.93327 0.99867 1.19174 1.08784 0.94794 0.94741 1.20661 0.97225 0.93689 0.97076 1.20841 1.07729 0.94663 0.97818 1.17961 0.90878 0.84405 0.93327 1.47093 1.67142 1.05740 1.12157 1.21469 0.99763 0.97156 0.86180 1.19287 0.93663 0.91347 0.82826 1.21622 0.91720 1.33332 1.10230 0.92200 1.24972 0.98839 0.95068 0.95286 1.69943 1.35678 1.34486 1.13290 0.86467 0.85299 0.77766 0.78102 1.19721 1.20949 1.20848 1.20569 1.11030 0.95109 0.97924 1.20481 0.96807 0.93297 0.96375 0.90750 0.90661 0.88261 0.95083 0.91073 0.77877 0.92288 0.92434 0.91208 0.84125 0.90893 0.95220 0.87514 0.85195 0.94643 0.91485 0.92674 0.95221 0.94641 0.92709 0.86984 0.87337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.82 10.57 101.05 1.07 0.24 16 2 S -0.24 -2.31 20.48 -107.50 -2.20 -4.51 16 3 C -0.04 -0.38 2.38 -26.73 -0.06 -0.44 16 4 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 5 C 0.09 0.82 6.28 37.16 0.23 1.05 16 6 O -0.56 -5.27 12.64 -35.23 -0.45 -5.71 16 7 C 0.11 1.09 1.88 -67.71 -0.13 0.96 16 8 H 0.09 1.11 7.40 -51.93 -0.38 0.72 16 9 C -0.19 -1.73 8.93 37.16 0.33 -1.40 16 10 N -0.67 -7.30 5.35 -107.99 -0.58 -7.87 16 11 C 0.12 1.48 5.61 -4.98 -0.03 1.45 16 12 C -0.17 -2.58 5.39 -104.58 -0.56 -3.14 16 13 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 16 14 C -0.19 -3.75 9.21 -39.38 -0.36 -4.11 16 15 C 0.24 4.84 6.55 -83.79 -0.55 4.29 16 16 N -0.62 -13.12 2.99 -181.00 -0.54 -13.66 16 17 C 0.10 1.72 10.19 59.84 0.61 2.33 16 18 C 0.25 6.20 4.92 -5.19 -0.03 6.18 16 19 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 20 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 23 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C -0.22 -3.84 9.21 -39.38 -0.36 -4.21 16 28 C -0.05 -0.77 9.69 -39.61 -0.38 -1.16 16 29 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.07 0.45 6.94 -51.92 -0.36 0.09 16 31 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.03 0.23 6.78 -51.93 -0.35 -0.12 16 33 H 0.07 0.67 7.64 -51.93 -0.40 0.27 16 34 H 0.38 2.16 9.12 45.56 0.42 2.58 16 35 H 0.06 0.57 7.35 -51.93 -0.38 0.18 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 38 H 0.34 3.70 8.47 -39.29 -0.33 3.36 16 39 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 40 H 0.03 0.36 7.30 -51.93 -0.38 -0.02 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.13 2.87 6.14 -52.48 -0.32 2.55 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.19 8.07 -51.93 -0.42 0.78 16 45 H 0.05 0.85 6.20 -51.93 -0.32 0.53 16 46 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 47 H 0.04 0.94 6.19 -51.93 -0.32 0.61 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.11 1.75 6.14 -52.49 -0.32 1.43 16 50 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -29.77 411.04 -10.48 -40.25 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -7.60 Total: 6.49 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.03 Total: -12.63 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: -0.38 Total: -46.34 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.45 Total: -5.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -2.20 Total: -4.51 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -29.77 -10.48 -40.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.661 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds