Wall clock time and date at job start Tue Mar 31 2020 20:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00222 * 2 1 4 4 H 1.08999 * 109.46766 * 52.50748 * 3 2 1 5 5 C 1.53001 * 109.46889 * 292.51478 * 3 2 1 6 6 O 1.42901 * 109.47107 * 294.99712 * 5 3 2 7 7 C 1.52997 * 109.47117 * 172.51220 * 3 2 1 8 8 H 1.09002 * 109.47044 * 54.68345 * 7 3 2 9 9 C 1.53002 * 109.47002 * 294.68003 * 7 3 2 10 10 N 1.46901 * 109.46900 * 174.68104 * 7 3 2 11 11 C 1.46896 * 110.99908 * 204.99830 * 10 7 3 12 12 C 1.50703 * 109.46774 * 180.02562 * 11 10 7 13 13 C 1.38287 * 119.92264 * 90.00625 * 12 11 10 14 14 C 1.38108 * 120.06925 * 180.29531 * 13 12 11 15 15 C 1.38912 * 119.92905 * 359.44960 * 14 13 12 16 16 N 1.39666 * 120.07751 * 180.29985 * 15 14 13 17 17 C 1.46495 * 120.00397 * 180.25336 * 16 15 14 18 18 C 1.46505 * 120.00133 * 0.24248 * 16 15 14 19 19 C 1.50705 * 109.46752 * 90.00372 * 18 16 15 20 20 H 1.08002 * 120.00275 * 0.02562 * 19 18 16 21 21 C 1.37879 * 120.00042 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99632 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47371 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47108 * 120.00205 * 23 21 19 26 26 H 1.48502 * 109.47016 * 240.00047 * 23 21 19 27 27 C 1.38915 * 119.84533 * 0.54554 * 15 14 13 28 28 C 1.38097 * 119.92659 * 359.72585 * 27 15 14 29 29 H 1.09003 * 109.47491 * 295.39465 * 1 2 3 30 30 H 1.09006 * 109.47292 * 55.39514 * 1 2 3 31 31 H 1.08999 * 109.47554 * 175.39095 * 1 2 3 32 32 H 1.08998 * 109.47485 * 54.99534 * 5 3 2 33 33 H 1.09001 * 109.46856 * 174.99746 * 5 3 2 34 34 H 0.96699 * 114.00148 * 180.02562 * 6 5 3 35 35 H 1.09002 * 109.46846 * 185.14053 * 9 7 3 36 36 H 1.08997 * 109.47196 * 305.14241 * 9 7 3 37 37 H 1.09001 * 109.46462 * 65.14347 * 9 7 3 38 38 H 1.00903 * 110.99848 * 81.04089 * 10 7 3 39 39 H 1.08993 * 109.47134 * 60.00484 * 11 10 7 40 40 H 1.08998 * 109.47519 * 300.00053 * 11 10 7 41 41 H 1.08000 * 119.96663 * 0.02562 * 13 12 11 42 42 H 1.08003 * 120.03313 * 179.72188 * 14 13 12 43 43 H 1.08998 * 109.47676 * 89.99346 * 17 16 15 44 44 H 1.09004 * 109.47497 * 209.99720 * 17 16 15 45 45 H 1.09005 * 109.46665 * 329.99417 * 17 16 15 46 46 H 1.08996 * 109.47313 * 210.00287 * 18 16 15 47 47 H 1.09000 * 109.47046 * 330.00715 * 18 16 15 48 48 H 0.97009 * 119.99843 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.03467 * 179.70796 * 27 15 14 50 50 H 1.08001 * 119.96149 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6944 2.2622 0.8154 5 6 1.7986 2.3886 -1.3326 6 8 2.5743 1.8216 -2.3903 7 6 3.7303 1.9426 0.1880 8 1 4.2603 1.3697 -0.5730 9 6 4.1328 1.4413 1.5764 10 7 4.0778 3.3643 0.0609 11 6 5.4771 3.5292 -0.3544 12 6 5.7961 4.9972 -0.4732 13 6 6.2812 5.6886 0.6218 14 6 6.5688 7.0354 0.5180 15 6 6.3811 7.6930 -0.6912 16 7 6.6769 9.0535 -0.8013 17 6 6.4732 9.7466 -2.0757 18 6 7.1907 9.7877 0.3577 19 6 8.6962 9.7192 0.3686 20 1 9.2180 9.1828 -0.4101 21 6 9.4073 10.3412 1.3728 22 7 8.7718 10.9938 2.3213 23 14 11.2733 10.2569 1.3859 24 1 11.7415 9.4682 0.2179 25 1 11.8314 11.6310 1.3117 26 1 11.7305 9.6039 2.6388 27 6 5.8938 6.9953 -1.7892 28 6 5.6029 5.6500 -1.6769 29 1 -0.3634 0.4407 0.9284 30 1 -0.3634 0.5837 -0.8459 31 1 -0.3634 -1.0243 -0.0826 32 1 0.7420 2.1865 -1.5083 33 1 1.9619 3.4658 -1.2995 34 1 2.3592 2.1701 -3.2663 35 1 5.1894 1.6494 1.7455 36 1 3.5365 1.9504 2.3335 37 1 3.9594 0.3670 1.6390 38 1 3.8950 3.8594 0.9209 39 1 5.6293 3.0447 -1.3188 40 1 6.1326 3.0742 0.3882 41 1 6.4311 5.1758 1.5604 42 1 6.9433 7.5758 1.3748 43 1 5.4613 10.1501 -2.1123 44 1 7.1924 10.5608 -2.1657 45 1 6.6144 9.0447 -2.8977 46 1 6.8748 10.8291 0.2974 47 1 6.8001 9.3419 1.2725 48 1 9.2722 11.4318 3.0277 49 1 5.7423 7.5046 -2.7294 50 1 5.2236 5.1072 -2.5301 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152468431.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:22 Heat of formation + Delta-G solvation = -36.946616 kcal Electronic energy + Delta-G solvation = -26825.147265 eV Core-core repulsion = 23170.647230 eV Total energy + Delta-G solvation = -3654.500035 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.47519 -39.04224 -37.55397 -36.62640 -34.80459 -33.24692 -31.86419 -30.88194 -29.95328 -29.52478 -29.11947 -27.03101 -25.59657 -24.26856 -23.56789 -22.93172 -21.68561 -20.99274 -18.63889 -18.38419 -18.15510 -17.35736 -16.94171 -16.42632 -16.32860 -16.08561 -15.75441 -15.57191 -15.34513 -15.03987 -14.86911 -14.44948 -14.35526 -14.24619 -14.21763 -14.02908 -13.95065 -13.51800 -13.39713 -13.17891 -13.11454 -12.98003 -12.83031 -12.64379 -12.63342 -12.54727 -12.19465 -12.12502 -12.02038 -11.73298 -11.71327 -11.38491 -10.88774 -10.65123 -10.56031 -10.38636 -9.64304 -9.27042 -8.53187 -8.36438 -7.78892 -6.37785 0.70492 0.73918 0.90816 1.35328 1.37156 1.49308 1.72438 2.33878 2.64723 3.04376 3.05809 3.40625 3.63621 3.70593 3.97405 4.07030 4.17328 4.26491 4.29459 4.33977 4.37780 4.42009 4.46395 4.52054 4.59390 4.66876 4.70998 4.72920 4.78889 4.85642 4.89175 4.92739 4.93891 4.99061 5.03056 5.07997 5.14877 5.21611 5.26622 5.35834 5.60237 5.69600 5.71221 5.95512 6.07127 6.10135 6.24700 6.50856 6.51599 6.83282 6.95364 7.04016 7.34125 8.82741 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020980 B = 0.002085 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.267731 B =13427.245102 C =14096.956302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.287 6.287 3 C -0.036 4.036 4 H 0.101 0.899 5 C 0.097 3.903 6 O -0.573 6.573 7 C 0.117 3.883 8 H 0.075 0.925 9 C -0.181 4.181 10 N -0.671 5.671 11 C 0.127 3.873 12 C -0.156 4.156 13 C -0.067 4.067 14 C -0.216 4.216 15 C 0.212 3.788 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.266 3.734 19 C -0.539 4.539 20 H 0.049 0.951 21 C 0.011 3.989 22 N -0.926 5.926 23 Si 0.962 3.038 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.277 1.277 27 C -0.217 4.217 28 C -0.046 4.046 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.390 0.610 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.342 0.658 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.011 0.989 48 H 0.267 0.733 49 H 0.131 0.869 50 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.722 -19.861 -7.344 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.061 6.061 3 C -0.165 4.165 4 H 0.119 0.881 5 C 0.018 3.982 6 O -0.380 6.380 7 C 0.006 3.994 8 H 0.094 0.906 9 C -0.239 4.239 10 N -0.302 5.302 11 C -0.001 4.001 12 C -0.158 4.158 13 C -0.086 4.086 14 C -0.238 4.238 15 C 0.107 3.893 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.578 4.578 20 H 0.067 0.933 21 C -0.188 4.188 22 N -0.566 5.566 23 Si 0.787 3.213 24 H -0.195 1.195 25 H -0.200 1.200 26 H -0.203 1.203 27 C -0.240 4.240 28 C -0.065 4.065 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.238 0.762 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.160 0.840 39 H 0.096 0.904 40 H 0.052 0.948 41 H 0.140 0.860 42 H 0.112 0.888 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.149 0.851 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.973 -20.682 -7.354 27.147 hybrid contribution 0.524 1.720 0.945 2.032 sum -15.449 -18.962 -6.409 25.284 Atomic orbital electron populations 1.23457 0.92208 1.07199 1.05531 1.86985 1.09506 1.11766 1.97863 1.23269 1.00013 0.93102 1.00090 0.88127 1.22018 0.92861 0.97088 0.86273 1.86480 1.64351 1.68337 1.18817 1.21008 0.92568 0.89168 0.96678 0.90640 1.22524 1.01477 1.02642 0.97304 1.60494 1.21627 1.09738 1.38324 1.20542 0.87978 0.91155 1.00443 1.19464 1.06438 0.96032 0.93900 1.20816 0.96800 0.92466 0.98525 1.20742 1.09869 0.96097 0.97139 1.18238 0.92584 0.84074 0.94398 1.46955 1.68421 1.06457 1.12179 1.21596 1.00409 0.97236 0.85246 1.18770 0.92635 0.90325 0.83803 1.21807 0.92969 1.33075 1.09974 0.93309 1.25787 1.03462 0.94672 0.94877 1.70044 1.37461 1.35202 1.13895 0.85450 0.79726 0.78063 0.78095 1.19542 1.19982 1.20287 1.20795 1.09848 0.95768 0.97579 1.20841 0.95631 0.92678 0.97367 0.89733 0.89936 0.87288 0.93773 0.91671 0.76176 0.92667 0.91766 0.91454 0.83974 0.90362 0.94832 0.86019 0.88781 0.92953 0.92585 0.90341 0.97316 0.97079 0.92407 0.85092 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 10.57 113.37 1.20 -0.04 16 2 S -0.29 -4.99 20.48 -56.49 -1.16 -6.14 16 3 C -0.04 -0.58 2.38 30.59 0.07 -0.51 16 4 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 5 C 0.10 1.47 6.28 71.98 0.45 1.93 16 6 O -0.57 -9.62 12.64 -148.98 -1.88 -11.51 16 7 C 0.12 2.12 1.88 44.91 0.08 2.21 16 8 H 0.08 1.68 7.40 -2.39 -0.02 1.67 16 9 C -0.18 -3.09 8.93 71.98 0.64 -2.45 16 10 N -0.67 -13.03 5.35 -495.59 -2.65 -15.68 16 11 C 0.13 2.82 5.61 85.56 0.48 3.30 16 12 C -0.16 -4.35 5.39 -19.84 -0.11 -4.45 16 13 C -0.07 -2.20 9.69 22.25 0.22 -1.99 16 14 C -0.22 -8.91 9.21 22.40 0.21 -8.70 16 15 C 0.21 8.59 6.55 38.22 0.25 8.84 16 16 N -0.63 -27.67 2.99 -726.55 -2.17 -29.84 16 17 C 0.10 3.40 10.19 127.77 1.30 4.70 16 18 C 0.27 14.02 4.92 85.63 0.42 14.44 16 19 C -0.54 -30.40 9.39 25.60 0.24 -30.16 16 20 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 21 C 0.01 0.63 5.46 84.66 0.46 1.09 16 22 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 23 Si 0.96 44.25 29.54 68.60 2.03 46.27 16 24 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 C -0.22 -7.09 9.21 22.40 0.21 -6.88 16 28 C -0.05 -1.29 9.69 22.25 0.22 -1.08 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 0.77 6.94 -2.39 -0.02 0.76 16 31 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.04 0.55 6.78 -2.39 -0.02 0.54 16 33 H 0.07 1.07 7.64 -2.39 -0.02 1.05 16 34 H 0.39 3.60 9.12 -74.06 -0.68 2.93 16 35 H 0.05 0.98 7.35 -2.39 -0.02 0.96 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.20 7.33 -2.39 -0.02 1.18 16 38 H 0.34 6.70 8.47 -89.69 -0.76 5.94 16 39 H 0.08 1.72 8.00 -2.39 -0.02 1.70 16 40 H 0.03 0.74 7.30 -2.39 -0.02 0.72 16 41 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.09 4.51 6.14 -2.91 -0.02 4.49 16 43 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 45 H 0.08 2.31 6.20 -2.38 -0.01 2.29 16 46 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 47 H 0.01 0.64 6.19 -2.39 -0.01 0.62 16 48 H 0.27 14.70 8.31 -92.70 -0.77 13.93 16 49 H 0.13 3.72 6.14 -2.91 -0.02 3.70 16 50 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -65.78 411.04 0.30 -65.48 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: -0.50 Total: 25.26 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 6.34 Total: -19.74 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -4.54 Total: -99.63 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.88 Total: -11.51 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -1.16 Total: -6.14 kcal Total: -65.78 0.30 -65.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468431.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.537 kcal (2) G-P(sol) polarization free energy of solvation -65.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds