Wall clock time and date at job start Tue Mar 31 2020 20:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81410 * 102.99905 * 2 1 4 4 H 1.09007 * 109.46632 * 55.00237 * 3 2 1 5 5 C 1.52997 * 109.47139 * 295.00196 * 3 2 1 6 6 O 1.42895 * 109.47200 * 294.99753 * 5 3 2 7 7 C 1.52995 * 109.47055 * 174.99774 * 3 2 1 8 8 H 1.08997 * 109.46994 * 184.99900 * 7 3 2 9 9 C 1.52997 * 109.47429 * 305.00217 * 7 3 2 10 10 N 1.46898 * 109.46917 * 65.00484 * 7 3 2 11 11 C 1.46899 * 111.00124 * 154.99769 * 10 7 3 12 12 C 1.50698 * 109.47070 * 179.97438 * 11 10 7 13 13 C 1.38288 * 119.92407 * 90.00087 * 12 11 10 14 14 C 1.38111 * 120.07382 * 179.69843 * 13 12 11 15 15 C 1.38906 * 119.92343 * 0.28047 * 14 13 12 16 16 N 1.39676 * 120.07171 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00261 * 359.97438 * 16 15 14 18 18 C 1.46500 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47458 * 89.99484 * 18 16 15 20 20 H 1.08007 * 119.99580 * 0.02562 * 19 18 16 21 21 C 1.37875 * 120.00251 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00212 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47179 * 119.99438 * 23 21 19 26 26 H 1.48500 * 109.46992 * 239.99882 * 23 21 19 27 27 C 1.38908 * 119.85606 * 359.97438 * 15 14 13 28 28 C 1.38112 * 119.92096 * 0.02562 * 27 15 14 29 29 H 1.08997 * 109.47098 * 59.99793 * 1 2 3 30 30 H 1.09002 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47415 * 299.99682 * 1 2 3 32 32 H 1.09005 * 109.47187 * 54.99820 * 5 3 2 33 33 H 1.09002 * 109.46819 * 174.99649 * 5 3 2 34 34 H 0.96698 * 114.00468 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46986 * 299.99871 * 9 7 3 36 36 H 1.08997 * 109.47291 * 59.99865 * 9 7 3 37 37 H 1.09001 * 109.47014 * 180.02562 * 9 7 3 38 38 H 1.00898 * 111.00093 * 278.95106 * 10 7 3 39 39 H 1.09001 * 109.47298 * 60.00095 * 11 10 7 40 40 H 1.09003 * 109.47252 * 299.99696 * 11 10 7 41 41 H 1.08002 * 119.96530 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03725 * 180.29787 * 14 13 12 43 43 H 1.09003 * 109.46748 * 90.00479 * 17 16 15 44 44 H 1.09000 * 109.47356 * 210.00064 * 17 16 15 45 45 H 1.09000 * 109.47257 * 330.00749 * 17 16 15 46 46 H 1.08994 * 109.47318 * 210.00032 * 18 16 15 47 47 H 1.09001 * 109.47009 * 329.99755 * 18 16 15 48 48 H 0.96992 * 120.00096 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.04186 * 180.02562 * 27 15 14 50 50 H 1.08002 * 119.96339 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7427 2.4017 -1.3073 6 8 2.4728 1.8452 -2.4024 7 6 3.7369 1.9413 0.1258 8 1 3.9749 3.0012 0.2151 9 6 4.2338 1.2005 1.3688 10 7 4.3935 1.3909 -1.0675 11 6 5.7000 2.0250 -1.2891 12 6 6.3422 1.4357 -2.5184 13 6 6.1136 2.0066 -3.7571 14 6 6.7056 1.4728 -4.8850 15 6 7.5268 0.3579 -4.7749 16 7 8.1266 -0.1848 -5.9136 17 6 7.8896 0.4216 -7.2259 18 6 8.9928 -1.3603 -5.7956 19 6 8.1653 -2.6111 -5.9435 20 1 7.1005 -2.5376 -6.1093 21 6 8.7672 -3.8491 -5.8672 22 7 10.0638 -3.9386 -5.6658 23 14 7.7415 -5.3994 -6.0513 24 1 6.3198 -5.0293 -6.2686 25 1 8.2327 -6.1829 -7.2133 26 1 7.8564 -6.2183 -4.8178 27 6 7.7501 -0.2162 -3.5298 28 6 7.1549 0.3226 -2.4060 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.6795 2.2010 -1.4401 33 1 1.9074 3.4785 -1.2705 34 1 2.2205 2.2016 -3.2651 35 1 3.7465 1.6089 2.2542 36 1 3.9958 0.1406 1.2795 37 1 5.3129 1.3246 1.4586 38 1 4.4850 0.3884 -0.9999 39 1 6.3407 1.8488 -0.4250 40 1 5.5644 3.0976 -1.4282 41 1 5.4750 2.8734 -3.8420 42 1 6.5306 1.9220 -5.8514 43 1 8.6444 1.1850 -7.4150 44 1 7.9486 -0.3464 -7.9971 45 1 6.8997 0.8776 -7.2421 46 1 9.7519 -1.3323 -6.5772 47 1 9.4769 -1.3584 -4.8189 48 1 10.4873 -4.8095 -5.6125 49 1 8.3883 -1.0829 -3.4407 50 1 7.3284 -0.1230 -1.4376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152468522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:27 Heat of formation + Delta-G solvation = -3.298381 kcal Electronic energy + Delta-G solvation = -27380.544965 eV Core-core repulsion = 23727.504027 eV Total energy + Delta-G solvation = -3653.040938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.00818 -38.00919 -36.18293 -35.29170 -32.79194 -32.05494 -30.32565 -29.96052 -28.76667 -28.26138 -27.71769 -25.50841 -24.01233 -23.19844 -22.02807 -21.36438 -20.90984 -19.46560 -17.46893 -16.66542 -16.44369 -16.28488 -15.63143 -15.16169 -15.08658 -14.81995 -14.52420 -14.26664 -13.97274 -13.86446 -13.60632 -13.43093 -13.30592 -12.89579 -12.80270 -12.75549 -12.53034 -12.44281 -12.12800 -11.93435 -11.71071 -11.62592 -11.40567 -11.32453 -11.19408 -11.02314 -10.85436 -10.63685 -10.53417 -10.20782 -9.98489 -9.79709 -9.66814 -9.63963 -8.73799 -8.46230 -8.14815 -7.92734 -7.60035 -6.38053 -5.95435 -4.12306 1.55918 2.23381 2.36190 2.48396 3.29379 3.37413 3.43434 4.19523 4.22955 4.26609 4.46739 4.54799 4.72558 4.90011 4.95598 5.00048 5.08305 5.15030 5.24664 5.26311 5.32691 5.38773 5.45001 5.50735 5.53340 5.65235 5.67612 5.74631 5.83524 5.91569 5.92745 6.09135 6.09828 6.15937 6.36124 6.50456 6.54287 6.76191 7.03300 7.12479 7.27266 7.32879 7.36781 7.44119 7.69824 7.72689 7.86618 7.88331 8.21396 8.34765 8.57957 8.97711 9.54588 11.00292 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002835 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.845967 B = 9874.628813 C =10919.237335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.222 6.222 3 C -0.048 4.048 4 H 0.090 0.910 5 C 0.091 3.909 6 O -0.505 6.505 7 C 0.107 3.893 8 H 0.082 0.918 9 C -0.188 4.188 10 N -0.641 5.641 11 C 0.117 3.883 12 C -0.164 4.164 13 C -0.046 4.046 14 C -0.224 4.224 15 C 0.240 3.760 16 N -0.617 5.617 17 C 0.099 3.901 18 C 0.249 3.751 19 C -0.528 4.528 20 H 0.060 0.940 21 C 0.061 3.939 22 N -0.896 5.896 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 C -0.188 4.188 28 C -0.068 4.068 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.358 0.642 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.345 0.655 39 H 0.021 0.979 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.034 0.966 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.035 0.965 48 H 0.263 0.737 49 H 0.129 0.871 50 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.132 15.371 11.410 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.004 5.996 3 C -0.178 4.178 4 H 0.109 0.891 5 C 0.010 3.990 6 O -0.307 6.307 7 C -0.005 4.005 8 H 0.100 0.900 9 C -0.248 4.248 10 N -0.272 5.272 11 C -0.011 4.011 12 C -0.167 4.167 13 C -0.065 4.065 14 C -0.247 4.247 15 C 0.134 3.866 16 N -0.323 5.323 17 C -0.045 4.045 18 C 0.129 3.871 19 C -0.567 4.567 20 H 0.078 0.922 21 C -0.141 4.141 22 N -0.536 5.536 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 C -0.210 4.210 28 C -0.088 4.088 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.202 0.798 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.165 0.835 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.072 0.928 49 H 0.147 0.853 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.237 14.331 11.277 23.763 hybrid contribution -1.246 -0.077 0.167 1.260 sum -16.483 14.254 11.444 24.613 Atomic orbital electron populations 1.23444 0.96287 1.06196 1.04219 1.87017 1.05038 1.10048 1.97490 1.23495 1.00265 0.94991 0.99027 0.89146 1.21905 0.93318 0.95515 0.88220 1.87124 1.62302 1.66303 1.14926 1.21217 0.90351 0.99318 0.89635 0.89987 1.22623 1.01325 1.02205 0.98609 1.60594 1.20967 1.09847 1.35782 1.20652 0.88452 0.97869 0.94115 1.19131 1.03585 0.99648 0.94291 1.20415 0.96518 0.98146 0.91446 1.20551 1.05322 1.00267 0.98546 1.17929 0.90338 0.90914 0.87456 1.47064 1.50573 1.31517 1.03189 1.21450 0.99403 0.97624 0.85991 1.19267 0.88929 0.80980 0.97896 1.21641 0.95052 0.90669 1.49373 0.92165 1.24961 0.94950 0.99136 0.95075 1.69940 1.09202 1.24683 1.49726 0.86480 0.80590 0.82954 0.77710 1.19653 1.21003 1.20858 1.20817 1.05948 1.03237 0.91041 1.20645 0.96029 0.94769 0.97340 0.90801 0.88370 0.91172 0.95302 0.94131 0.79806 0.92389 0.91037 0.92425 0.83497 0.96046 0.91698 0.87490 0.87143 0.94772 0.91580 0.92701 0.95312 0.94687 0.92767 0.85321 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 10.45 101.05 1.06 0.01 16 2 S -0.22 -2.40 19.29 -107.50 -2.07 -4.47 16 3 C -0.05 -0.44 2.67 -26.74 -0.07 -0.51 16 4 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 5 C 0.09 0.79 6.58 37.16 0.24 1.04 16 6 O -0.51 -5.56 10.81 -35.23 -0.38 -5.94 16 7 C 0.11 1.04 2.40 -67.72 -0.16 0.88 16 8 H 0.08 0.75 7.80 -51.93 -0.40 0.34 16 9 C -0.19 -1.78 8.84 37.16 0.33 -1.45 16 10 N -0.64 -7.83 3.44 -108.00 -0.37 -8.20 16 11 C 0.12 1.50 5.60 -4.98 -0.03 1.47 16 12 C -0.16 -2.59 5.39 -104.59 -0.56 -3.16 16 13 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 14 C -0.22 -4.00 9.21 -39.38 -0.36 -4.37 16 15 C 0.24 5.01 6.55 -83.79 -0.55 4.46 16 16 N -0.62 -13.58 2.99 -181.00 -0.54 -14.12 16 17 C 0.10 1.80 10.19 59.85 0.61 2.41 16 18 C 0.25 6.39 4.91 -5.19 -0.03 6.36 16 19 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 20 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 22 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 23 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 C -0.19 -3.93 9.21 -39.38 -0.36 -4.29 16 28 C -0.07 -1.21 9.69 -39.61 -0.38 -1.60 16 29 H 0.07 0.56 7.02 -51.93 -0.36 0.19 16 30 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.03 0.23 6.72 -51.93 -0.35 -0.12 16 33 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.36 2.91 9.12 45.56 0.42 3.33 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 37 H 0.06 0.55 7.45 -51.93 -0.39 0.17 16 38 H 0.35 4.94 8.10 -39.29 -0.32 4.62 16 39 H 0.02 0.27 7.38 -51.93 -0.38 -0.12 16 40 H 0.06 0.78 8.00 -51.93 -0.42 0.36 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.11 1.79 6.14 -52.49 -0.32 1.47 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 45 H 0.05 0.88 6.20 -51.93 -0.32 0.56 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.04 0.95 6.20 -51.93 -0.32 0.63 16 48 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.13 2.97 6.14 -52.49 -0.32 2.65 16 50 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 407.12 15.07 6.14 6.14 Total: -1.00 -30.52 407.12 -10.20 -40.72 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -7.61 Total: 7.82 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -1.07 Total: -13.31 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: -0.18 Total: -47.67 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.38 Total: -5.94 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -2.40 SS G_CDS: -2.07 Total: -4.47 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.52 -10.20 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.423 kcal (2) G-P(sol) polarization free energy of solvation -30.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds