Wall clock time and date at job start Tue Mar 31 2020 20:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81410 * 102.99905 * 2 1 4 4 H 1.09007 * 109.46632 * 55.00237 * 3 2 1 5 5 C 1.52997 * 109.47139 * 295.00196 * 3 2 1 6 6 O 1.42895 * 109.47200 * 294.99753 * 5 3 2 7 7 C 1.52995 * 109.47055 * 174.99774 * 3 2 1 8 8 H 1.08997 * 109.46994 * 184.99900 * 7 3 2 9 9 C 1.52997 * 109.47429 * 305.00217 * 7 3 2 10 10 N 1.46898 * 109.46917 * 65.00484 * 7 3 2 11 11 C 1.46899 * 111.00124 * 154.99769 * 10 7 3 12 12 C 1.50698 * 109.47070 * 179.97438 * 11 10 7 13 13 C 1.38288 * 119.92407 * 90.00087 * 12 11 10 14 14 C 1.38111 * 120.07382 * 179.69843 * 13 12 11 15 15 C 1.38906 * 119.92343 * 0.28047 * 14 13 12 16 16 N 1.39676 * 120.07171 * 179.97438 * 15 14 13 17 17 C 1.46499 * 120.00261 * 359.97438 * 16 15 14 18 18 C 1.46500 * 120.00062 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.47458 * 89.99484 * 18 16 15 20 20 H 1.08007 * 119.99580 * 0.02562 * 19 18 16 21 21 C 1.37875 * 120.00251 * 180.02562 * 19 18 16 22 22 N 1.31513 * 120.00212 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99942 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47202 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47179 * 119.99438 * 23 21 19 26 26 H 1.48500 * 109.46992 * 239.99882 * 23 21 19 27 27 C 1.38908 * 119.85606 * 359.97438 * 15 14 13 28 28 C 1.38112 * 119.92096 * 0.02562 * 27 15 14 29 29 H 1.08997 * 109.47098 * 59.99793 * 1 2 3 30 30 H 1.09002 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47415 * 299.99682 * 1 2 3 32 32 H 1.09005 * 109.47187 * 54.99820 * 5 3 2 33 33 H 1.09002 * 109.46819 * 174.99649 * 5 3 2 34 34 H 0.96698 * 114.00468 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.46986 * 299.99871 * 9 7 3 36 36 H 1.08997 * 109.47291 * 59.99865 * 9 7 3 37 37 H 1.09001 * 109.47014 * 180.02562 * 9 7 3 38 38 H 1.00898 * 111.00093 * 278.95106 * 10 7 3 39 39 H 1.09001 * 109.47298 * 60.00095 * 11 10 7 40 40 H 1.09003 * 109.47252 * 299.99696 * 11 10 7 41 41 H 1.08002 * 119.96530 * 359.97438 * 13 12 11 42 42 H 1.08000 * 120.03725 * 180.29787 * 14 13 12 43 43 H 1.09003 * 109.46748 * 90.00479 * 17 16 15 44 44 H 1.09000 * 109.47356 * 210.00064 * 17 16 15 45 45 H 1.09000 * 109.47257 * 330.00749 * 17 16 15 46 46 H 1.08994 * 109.47318 * 210.00032 * 18 16 15 47 47 H 1.09001 * 109.47009 * 329.99755 * 18 16 15 48 48 H 0.96992 * 120.00096 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.04186 * 180.02562 * 27 15 14 50 50 H 1.08002 * 119.96339 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7427 2.4017 -1.3073 6 8 2.4728 1.8452 -2.4024 7 6 3.7369 1.9413 0.1258 8 1 3.9749 3.0012 0.2151 9 6 4.2338 1.2005 1.3688 10 7 4.3935 1.3909 -1.0675 11 6 5.7000 2.0250 -1.2891 12 6 6.3422 1.4357 -2.5184 13 6 6.1136 2.0066 -3.7571 14 6 6.7056 1.4728 -4.8850 15 6 7.5268 0.3579 -4.7749 16 7 8.1266 -0.1848 -5.9136 17 6 7.8896 0.4216 -7.2259 18 6 8.9928 -1.3603 -5.7956 19 6 8.1653 -2.6111 -5.9435 20 1 7.1005 -2.5376 -6.1093 21 6 8.7672 -3.8491 -5.8672 22 7 10.0638 -3.9386 -5.6658 23 14 7.7415 -5.3994 -6.0513 24 1 6.3198 -5.0293 -6.2686 25 1 8.2327 -6.1829 -7.2133 26 1 7.8564 -6.2183 -4.8178 27 6 7.7501 -0.2162 -3.5298 28 6 7.1549 0.3226 -2.4060 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.6795 2.2010 -1.4401 33 1 1.9074 3.4785 -1.2705 34 1 2.2205 2.2016 -3.2651 35 1 3.7465 1.6089 2.2542 36 1 3.9958 0.1406 1.2795 37 1 5.3129 1.3246 1.4586 38 1 4.4850 0.3884 -0.9999 39 1 6.3407 1.8488 -0.4250 40 1 5.5644 3.0976 -1.4282 41 1 5.4750 2.8734 -3.8420 42 1 6.5306 1.9220 -5.8514 43 1 8.6444 1.1850 -7.4150 44 1 7.9486 -0.3464 -7.9971 45 1 6.8997 0.8776 -7.2421 46 1 9.7519 -1.3323 -6.5772 47 1 9.4769 -1.3584 -4.8189 48 1 10.4873 -4.8095 -5.6125 49 1 8.3883 -1.0829 -3.4407 50 1 7.3284 -0.1230 -1.4376 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152468522.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:26 Heat of formation + Delta-G solvation = -21.560506 kcal Electronic energy + Delta-G solvation = -27381.336870 eV Core-core repulsion = 23727.504027 eV Total energy + Delta-G solvation = -3653.832843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.41058 -38.90729 -37.41532 -36.40107 -34.78616 -33.17896 -31.81809 -30.86707 -29.85483 -29.47410 -29.01998 -26.97121 -25.54282 -24.13151 -23.43702 -22.86960 -21.68500 -20.93986 -18.62914 -18.22091 -18.05947 -17.15852 -16.92951 -16.47316 -16.23174 -15.94895 -15.59366 -15.45980 -15.32620 -15.00538 -14.88527 -14.38989 -14.30583 -14.21498 -14.05477 -13.96833 -13.63169 -13.45908 -13.19822 -13.15299 -13.04703 -12.90118 -12.75591 -12.67079 -12.59796 -12.53126 -12.21044 -12.11478 -11.86919 -11.72817 -11.60293 -11.34442 -10.70418 -10.64187 -10.34150 -10.32330 -9.58432 -8.85391 -8.39748 -8.34721 -7.74609 -6.36835 0.78468 0.86897 0.94524 1.35410 1.37392 1.49973 1.81861 2.35030 2.67703 3.06227 3.10155 3.56405 3.59795 3.87480 4.10744 4.17298 4.26470 4.33321 4.34245 4.37502 4.39368 4.46464 4.48215 4.59091 4.64441 4.69782 4.72007 4.76090 4.80085 4.80821 4.90612 4.91943 4.96398 4.99449 5.03411 5.08733 5.19544 5.23401 5.34146 5.40053 5.62911 5.74099 5.74715 6.02635 6.08556 6.27644 6.41176 6.53596 6.63308 6.85262 6.99224 7.29924 7.35196 8.83784 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.002835 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.845967 B = 9874.628813 C =10919.237335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.290 6.290 3 C -0.037 4.037 4 H 0.112 0.888 5 C 0.091 3.909 6 O -0.531 6.531 7 C 0.107 3.893 8 H 0.098 0.902 9 C -0.183 4.183 10 N -0.642 5.642 11 C 0.123 3.877 12 C -0.149 4.149 13 C -0.039 4.039 14 C -0.218 4.218 15 C 0.211 3.789 16 N -0.634 5.634 17 C 0.099 3.901 18 C 0.267 3.733 19 C -0.539 4.539 20 H 0.048 0.952 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.278 1.278 27 C -0.218 4.218 28 C -0.073 4.073 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.368 0.632 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.330 0.670 39 H 0.025 0.975 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.131 0.869 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.078 0.922 46 H 0.009 0.991 47 H 0.009 0.991 48 H 0.267 0.733 49 H 0.090 0.910 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 17.604 12.145 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.064 6.064 3 C -0.166 4.166 4 H 0.130 0.870 5 C 0.011 3.989 6 O -0.334 6.334 7 C -0.004 4.004 8 H 0.116 0.884 9 C -0.242 4.242 10 N -0.272 5.272 11 C -0.005 4.005 12 C -0.152 4.152 13 C -0.058 4.058 14 C -0.240 4.240 15 C 0.106 3.894 16 N -0.342 5.342 17 C -0.044 4.044 18 C 0.145 3.855 19 C -0.578 4.578 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.203 1.203 27 C -0.241 4.241 28 C -0.092 4.092 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.214 0.786 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.043 0.957 40 H 0.103 0.897 41 H 0.160 0.840 42 H 0.149 0.851 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -18.013 16.609 12.019 27.291 hybrid contribution -0.465 -0.667 0.047 0.815 sum -18.479 15.942 12.066 27.225 Atomic orbital electron populations 1.23425 0.93358 1.06642 1.05236 1.87291 1.08443 1.13000 1.97675 1.23535 0.99718 0.93105 1.00234 0.87046 1.21984 0.93499 0.96149 0.87268 1.87073 1.63104 1.67168 1.16069 1.21303 0.90705 0.99829 0.88562 0.88424 1.22548 1.01145 1.01251 0.99251 1.60596 1.20322 1.08830 1.37414 1.20632 0.88771 0.98570 0.92556 1.19504 1.01711 0.98029 0.95906 1.20809 0.95834 0.98603 0.90594 1.20813 1.04020 0.98897 1.00313 1.18197 0.91883 0.92449 0.86835 1.46935 1.51103 1.31161 1.05034 1.21583 1.01298 0.97579 0.83912 1.18745 0.88855 0.82301 0.95551 1.21815 0.94552 0.92034 1.49406 0.93414 1.25775 0.96062 1.02241 0.94622 1.70040 1.10655 1.25646 1.50369 0.85465 0.78838 0.79077 0.78061 1.19604 1.19738 1.20324 1.20705 1.07301 1.03234 0.92846 1.20796 0.96126 0.95555 0.96759 0.90348 0.88278 0.89478 0.94546 0.92453 0.78605 0.90873 0.92743 0.92855 0.85137 0.95680 0.89741 0.84022 0.85080 0.92966 0.92662 0.90346 0.97304 0.97309 0.92403 0.89159 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 10.45 113.37 1.18 -0.44 16 2 S -0.29 -5.90 19.29 -56.49 -1.09 -6.99 16 3 C -0.04 -0.56 2.67 30.59 0.08 -0.48 16 4 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 5 C 0.09 1.29 6.58 71.98 0.47 1.76 16 6 O -0.53 -10.27 10.81 -148.98 -1.61 -11.88 16 7 C 0.11 1.80 2.40 44.91 0.11 1.91 16 8 H 0.10 1.38 7.80 -2.39 -0.02 1.36 16 9 C -0.18 -3.12 8.84 71.98 0.64 -2.48 16 10 N -0.64 -14.25 3.44 -495.60 -1.71 -15.96 16 11 C 0.12 2.80 5.60 85.56 0.48 3.27 16 12 C -0.15 -4.44 5.39 -19.84 -0.11 -4.55 16 13 C -0.04 -1.15 9.69 22.25 0.22 -0.93 16 14 C -0.22 -7.42 9.21 22.40 0.21 -7.22 16 15 C 0.21 8.96 6.55 38.21 0.25 9.21 16 16 N -0.63 -28.86 2.99 -726.57 -2.17 -31.03 16 17 C 0.10 3.57 10.19 127.77 1.30 4.87 16 18 C 0.27 14.55 4.91 85.63 0.42 14.97 16 19 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 20 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 21 C 0.01 0.69 5.46 84.65 0.46 1.16 16 22 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 23 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 24 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 C -0.22 -9.60 9.21 22.40 0.21 -9.40 16 28 C -0.07 -2.63 9.69 22.25 0.22 -2.42 16 29 H 0.08 1.00 7.02 -2.39 -0.02 0.98 16 30 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.04 0.46 6.72 -2.38 -0.02 0.45 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.37 5.02 9.12 -74.06 -0.68 4.34 16 35 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.14 6.71 -2.39 -0.02 1.12 16 37 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 38 H 0.33 9.15 8.10 -89.70 -0.73 8.43 16 39 H 0.03 0.56 7.38 -2.39 -0.02 0.55 16 40 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 41 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 42 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.05 2.07 8.07 -2.39 -0.02 2.05 16 45 H 0.08 2.40 6.20 -2.39 -0.01 2.39 16 46 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 47 H 0.01 0.53 6.20 -2.39 -0.01 0.51 16 48 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 49 H 0.09 4.59 6.14 -2.91 -0.02 4.58 16 50 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.84 407.12 1.64 -67.19 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -0.46 Total: 28.48 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: 6.38 Total: -21.90 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.60 Total: -102.47 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: -1.61 Total: -11.88 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -1.09 Total: -6.99 kcal Total: -68.84 1.64 -67.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468522.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.634 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds