Wall clock time and date at job start Tue Mar 31 2020 20:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00005 * 2 1 4 4 H 1.09005 * 109.46593 * 304.99703 * 3 2 1 5 5 C 1.52997 * 109.47263 * 64.99731 * 3 2 1 6 6 O 1.42902 * 109.47107 * 64.60226 * 5 3 2 7 7 C 1.53000 * 109.46968 * 185.00200 * 3 2 1 8 8 H 1.09003 * 109.46938 * 298.03332 * 7 3 2 9 9 C 1.53009 * 109.46901 * 178.04089 * 7 3 2 10 10 N 1.46899 * 109.47603 * 58.03942 * 7 3 2 11 11 C 1.46897 * 111.00200 * 206.20378 * 10 7 3 12 12 C 1.50696 * 109.47155 * 179.97438 * 11 10 7 13 13 C 1.38286 * 119.92456 * 269.72513 * 12 11 10 14 14 C 1.38111 * 120.07082 * 179.72344 * 13 12 11 15 15 C 1.38906 * 119.92315 * 0.54958 * 14 13 12 16 16 N 1.39675 * 120.07070 * 179.74415 * 15 14 13 17 17 C 1.46506 * 119.99906 * 179.97438 * 16 15 14 18 18 C 1.46495 * 120.00415 * 359.97438 * 16 15 14 19 19 C 1.50698 * 109.47204 * 89.99466 * 18 16 15 20 20 H 1.07994 * 120.00285 * 0.02562 * 19 18 16 21 21 C 1.37881 * 119.99995 * 180.02562 * 19 18 16 22 22 N 1.31514 * 119.99957 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99840 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47410 * 60.00165 * 23 21 19 25 25 H 1.48510 * 109.46982 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47375 * 299.99825 * 23 21 19 27 27 C 1.38913 * 119.85471 * 359.72661 * 15 14 13 28 28 C 1.38099 * 119.92004 * 359.97438 * 27 15 14 29 29 H 1.09000 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47076 * 60.00274 * 1 2 3 31 31 H 1.09002 * 109.47502 * 300.00467 * 1 2 3 32 32 H 1.09004 * 109.46904 * 184.59616 * 5 3 2 33 33 H 1.08997 * 109.47256 * 304.59668 * 5 3 2 34 34 H 0.96698 * 113.99720 * 179.97438 * 6 5 3 35 35 H 1.08993 * 109.46685 * 299.99319 * 9 7 3 36 36 H 1.08992 * 109.47009 * 59.99946 * 9 7 3 37 37 H 1.08997 * 109.46517 * 179.97438 * 9 7 3 38 38 H 1.00905 * 110.99373 * 330.15957 * 10 7 3 39 39 H 1.09000 * 109.46881 * 300.00078 * 11 10 7 40 40 H 1.08999 * 109.47026 * 60.00000 * 11 10 7 41 41 H 1.08000 * 119.96272 * 359.97438 * 13 12 11 42 42 H 1.08002 * 120.03163 * 180.27119 * 14 13 12 43 43 H 1.08999 * 109.47343 * 90.00138 * 17 16 15 44 44 H 1.09003 * 109.46850 * 210.00281 * 17 16 15 45 45 H 1.09005 * 109.47104 * 329.99775 * 17 16 15 46 46 H 1.09001 * 109.47680 * 210.00145 * 18 16 15 47 47 H 1.08999 * 109.46842 * 329.99647 * 18 16 15 48 48 H 0.97000 * 119.99955 * 179.97438 * 22 21 19 49 49 H 1.08001 * 120.03807 * 179.97438 * 27 15 14 50 50 H 1.08007 * 119.95911 * 179.97438 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8419 5 6 1.7427 2.4016 1.3073 6 8 2.4664 1.8384 2.4033 7 6 3.7369 1.9412 -0.1258 8 1 4.2276 1.4848 0.7340 9 6 4.0770 3.4322 -0.1749 10 7 4.2038 1.2916 -1.3579 11 6 5.6095 0.8827 -1.2374 12 6 6.0517 0.2211 -2.5171 13 6 5.9131 -1.1462 -2.6705 14 6 6.3121 -1.7548 -3.8444 15 6 6.8636 -0.9935 -4.8669 16 7 7.2731 -1.6066 -6.0533 17 6 7.8541 -0.8020 -7.1310 18 6 7.1216 -3.0542 -6.2199 19 6 5.7747 -3.3518 -6.8267 20 1 5.0992 -2.5435 -7.0647 21 6 5.4047 -4.6560 -7.0779 22 7 6.2271 -5.6404 -6.7875 23 14 3.7354 -5.0248 -7.8306 24 1 3.6320 -4.3613 -9.1551 25 1 3.5813 -6.4924 -7.9983 26 1 2.6653 -4.5144 -6.9363 27 6 7.0067 0.3790 -4.7073 28 6 6.5999 0.9820 -3.5334 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.9141 3.4776 1.2734 33 1 0.6781 2.2072 1.4365 34 1 2.2141 2.1951 3.2659 35 1 3.5865 3.8885 -1.0346 36 1 3.7307 3.9141 0.7393 37 1 5.1563 3.5558 -0.2641 38 1 3.6177 0.5056 -1.5966 39 1 6.2282 1.7600 -1.0488 40 1 5.7139 0.1800 -0.4107 41 1 5.4886 -1.7382 -1.8732 42 1 6.1995 -2.8222 -3.9652 43 1 8.9348 -0.7463 -7.0007 44 1 7.6273 -1.2639 -8.0919 45 1 7.4323 0.2027 -7.1022 46 1 7.9068 -3.4285 -6.8768 47 1 7.1981 -3.5417 -5.2481 48 1 5.9667 -6.5580 -6.9639 49 1 7.4355 0.9737 -5.5003 50 1 6.7113 2.0490 -3.4084 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152468596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:30 Heat of formation + Delta-G solvation = -37.769739 kcal Electronic energy + Delta-G solvation = -26902.520929 eV Core-core repulsion = 23247.985201 eV Total energy + Delta-G solvation = -3654.535728 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48171 -39.11747 -37.68559 -36.64944 -34.80312 -33.37795 -31.88056 -30.89563 -29.88306 -29.53184 -29.00167 -27.21146 -25.87449 -24.48208 -23.34198 -22.92692 -21.40707 -20.97712 -18.63233 -18.52592 -18.20378 -17.64706 -16.98590 -16.59356 -16.31138 -16.20000 -15.86267 -15.73547 -15.32130 -15.05221 -14.73530 -14.54094 -14.35945 -14.29897 -14.14184 -14.05854 -13.88745 -13.56486 -13.38551 -13.21759 -13.12584 -13.03257 -12.88920 -12.67033 -12.55851 -12.51874 -12.24608 -12.14415 -11.90280 -11.81649 -11.71038 -11.39677 -11.00423 -10.64089 -10.61186 -10.40681 -9.66138 -9.35284 -8.61663 -8.35940 -7.79492 -6.37350 0.67699 0.71573 0.85001 1.36345 1.39013 1.47008 1.63251 2.34382 2.64178 2.99790 3.06237 3.30696 3.42381 3.78252 4.00454 4.06685 4.10726 4.23221 4.25461 4.29137 4.32423 4.41802 4.45529 4.49315 4.52223 4.55902 4.66096 4.71361 4.73593 4.77972 4.86767 4.87660 4.91117 5.00374 5.02482 5.10628 5.13746 5.20693 5.33796 5.42004 5.59463 5.68001 5.70256 5.93737 6.07490 6.13391 6.23478 6.45338 6.50629 6.82986 6.94529 6.94589 7.34382 8.83337 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.002720 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.662864 B =10291.946951 C =12044.505818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.313 6.313 3 C -0.049 4.049 4 H 0.109 0.891 5 C 0.085 3.915 6 O -0.577 6.577 7 C 0.108 3.892 8 H 0.044 0.956 9 C -0.130 4.130 10 N -0.687 5.687 11 C 0.123 3.877 12 C -0.158 4.158 13 C -0.069 4.069 14 C -0.215 4.215 15 C 0.214 3.786 16 N -0.632 5.632 17 C 0.098 3.902 18 C 0.267 3.733 19 C -0.542 4.542 20 H 0.049 0.951 21 C 0.012 3.988 22 N -0.927 5.927 23 Si 0.961 3.039 24 H -0.267 1.267 25 H -0.278 1.278 26 H -0.274 1.274 27 C -0.216 4.216 28 C -0.046 4.046 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.395 0.605 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.343 0.657 39 H 0.088 0.912 40 H 0.024 0.976 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.010 0.990 47 H 0.009 0.991 48 H 0.267 0.733 49 H 0.135 0.865 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 21.348 17.141 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.086 6.086 3 C -0.178 4.178 4 H 0.127 0.873 5 C 0.005 3.995 6 O -0.385 6.385 7 C -0.002 4.002 8 H 0.062 0.938 9 C -0.189 4.189 10 N -0.321 5.321 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.089 4.089 14 C -0.238 4.238 15 C 0.109 3.891 16 N -0.340 5.340 17 C -0.045 4.045 18 C 0.145 3.855 19 C -0.581 4.581 20 H 0.067 0.933 21 C -0.187 4.187 22 N -0.567 5.567 23 Si 0.786 3.214 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.200 1.200 27 C -0.239 4.239 28 C -0.065 4.065 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.245 0.755 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.164 0.836 39 H 0.106 0.894 40 H 0.042 0.958 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.028 0.972 47 H 0.027 0.973 48 H 0.076 0.924 49 H 0.153 0.847 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.892 20.407 16.131 27.184 hybrid contribution -1.873 -0.730 0.303 2.033 sum -9.765 19.677 16.434 27.434 Atomic orbital electron populations 1.23430 0.91390 1.07164 1.05787 1.87363 1.10666 1.13000 1.97593 1.23612 1.00189 0.93019 1.00973 0.87283 1.22256 0.94805 0.97139 0.85293 1.86560 1.65304 1.68477 1.18207 1.21224 0.90907 0.97095 0.90984 0.93751 1.21800 1.02093 0.92674 1.02306 1.60827 1.03151 1.34399 1.33719 1.20625 0.89607 0.98015 0.92321 1.19481 1.06161 0.92523 0.97927 1.20781 0.97396 0.94982 0.95694 1.20713 1.08289 0.99315 0.95449 1.18199 0.92146 0.92635 0.86101 1.46961 1.65323 1.07654 1.14053 1.21609 0.97427 0.95747 0.89696 1.18758 0.95091 0.76338 0.95301 1.21752 1.02417 0.92302 1.41598 0.93294 1.25790 1.01079 0.95856 0.95978 1.70032 1.37896 0.99920 1.48840 0.85563 0.79547 0.77217 0.79106 1.19179 1.20303 1.19959 1.20819 1.10544 0.91774 1.00721 1.20859 0.94666 0.99709 0.91259 0.87860 0.89633 0.89055 0.90156 0.92461 0.75483 0.91819 0.90800 0.92323 0.83644 0.89363 0.95774 0.86893 0.88833 0.92871 0.92523 0.90274 0.97209 0.97304 0.92381 0.84699 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.45 113.37 1.18 -0.42 16 2 S -0.31 -7.01 19.94 -56.49 -1.13 -8.14 16 3 C -0.05 -0.84 2.36 30.59 0.07 -0.77 16 4 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.09 0.96 6.14 71.98 0.44 1.40 16 6 O -0.58 -7.96 12.50 -148.98 -1.86 -9.82 16 7 C 0.11 2.15 2.07 44.92 0.09 2.24 16 8 H 0.04 1.06 7.14 -2.39 -0.02 1.04 16 9 C -0.13 -1.94 9.12 71.99 0.66 -1.28 16 10 N -0.69 -17.06 6.30 -495.57 -3.12 -20.18 16 11 C 0.12 3.19 5.61 85.56 0.48 3.67 16 12 C -0.16 -5.01 5.39 -19.84 -0.11 -5.12 16 13 C -0.07 -2.59 9.69 22.25 0.22 -2.37 16 14 C -0.21 -9.57 9.21 22.40 0.21 -9.36 16 15 C 0.21 9.14 6.55 38.21 0.25 9.39 16 16 N -0.63 -28.68 2.99 -726.55 -2.17 -30.85 16 17 C 0.10 3.51 10.19 127.77 1.30 4.81 16 18 C 0.27 14.48 4.91 85.63 0.42 14.90 16 19 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.01 0.70 5.46 84.66 0.46 1.16 16 22 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 23 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 27 C -0.22 -7.46 9.21 22.40 0.21 -7.25 16 28 C -0.05 -1.39 9.69 22.25 0.22 -1.18 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.00 7.03 -2.39 -0.02 0.98 16 32 H 0.08 0.57 6.72 -2.38 -0.02 0.56 16 33 H 0.06 0.51 6.74 -2.39 -0.02 0.49 16 34 H 0.40 1.78 9.12 -74.06 -0.68 1.11 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 0.82 6.58 -2.39 -0.02 0.80 16 37 H 0.06 0.91 7.53 -2.39 -0.02 0.90 16 38 H 0.34 9.78 6.74 -89.69 -0.60 9.18 16 39 H 0.09 1.98 7.46 -2.39 -0.02 1.96 16 40 H 0.02 0.66 7.99 -2.39 -0.02 0.64 16 41 H 0.11 3.99 8.06 -2.91 -0.02 3.96 16 42 H 0.09 4.78 6.14 -2.91 -0.02 4.76 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 44 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 45 H 0.08 2.40 6.20 -2.38 -0.01 2.39 16 46 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 47 H 0.01 0.53 6.20 -2.39 -0.01 0.51 16 48 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 49 H 0.14 3.99 6.14 -2.91 -0.02 3.98 16 50 H 0.14 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -70.51 408.14 0.03 -70.48 By element: Atomic # 1 Polarization: 28.38 SS G_CDS: -0.34 Total: 28.04 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 6.34 Total: -21.27 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -5.01 Total: -106.46 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.86 Total: -9.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: -7.01 SS G_CDS: -1.13 Total: -8.14 kcal Total: -70.51 0.03 -70.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152468596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.713 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds