Wall clock time and date at job start Tue Mar 31 2020 20:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 O 1.42901 * 109.47278 * 120.00453 * 2 1 3 5 5 C 1.53004 * 109.47181 * 240.00478 * 2 1 3 6 6 N 1.46896 * 109.46912 * 179.97438 * 5 2 1 7 7 C 1.46905 * 111.00180 * 293.94957 * 6 5 2 8 8 C 1.46901 * 110.99763 * 170.00213 * 6 5 2 9 9 H 1.09001 * 109.46870 * 309.99883 * 8 6 5 10 10 C 1.53001 * 109.47399 * 69.99414 * 8 6 5 11 11 C 1.50701 * 109.47071 * 189.99935 * 8 6 5 12 12 O 1.21291 * 119.99805 * 341.58278 * 11 8 6 13 13 N 1.34774 * 119.99771 * 161.58591 * 11 8 6 14 14 C 1.46497 * 120.00301 * 4.29514 * 13 11 8 15 15 C 1.50707 * 109.47262 * 274.60092 * 14 13 11 16 16 H 1.07996 * 119.99555 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00393 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47695 * 89.99742 * 19 17 15 21 21 H 1.48502 * 109.47365 * 210.00096 * 19 17 15 22 22 H 1.48506 * 109.47216 * 329.99611 * 19 17 15 23 23 C 1.40028 * 120.00096 * 184.29546 * 13 11 8 24 24 C 1.38850 * 120.05078 * 172.94468 * 23 13 11 25 25 C 1.38107 * 119.95811 * 180.25342 * 24 23 13 26 26 C 1.38477 * 120.04542 * 359.47045 * 25 24 23 27 27 F 1.35098 * 119.95866 * 180.23507 * 26 25 24 28 28 C 1.38483 * 120.08769 * 0.50973 * 26 25 24 29 29 C 1.38115 * 120.04263 * 359.76764 * 28 26 25 30 30 H 1.09003 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46944 * 299.99677 * 1 2 3 32 32 H 1.08992 * 109.47286 * 59.99529 * 1 2 3 33 33 H 0.96690 * 113.99964 * 59.99705 * 4 2 1 34 34 H 1.08996 * 109.46616 * 59.99539 * 5 2 1 35 35 H 1.09002 * 109.46490 * 300.00035 * 5 2 1 36 36 H 1.08998 * 109.47199 * 296.05083 * 7 6 5 37 37 H 1.09005 * 109.46621 * 56.04953 * 7 6 5 38 38 H 1.08995 * 109.46972 * 176.04771 * 7 6 5 39 39 H 1.09001 * 109.47148 * 306.24406 * 10 8 6 40 40 H 1.09004 * 109.46620 * 66.24354 * 10 8 6 41 41 H 1.09004 * 109.47201 * 186.24277 * 10 8 6 42 42 H 1.08996 * 109.47128 * 34.60424 * 14 13 11 43 43 H 1.08997 * 109.47424 * 154.60740 * 14 13 11 44 44 H 0.96991 * 120.00377 * 179.97438 * 18 17 15 45 45 H 1.08001 * 120.01798 * 359.97438 * 24 23 13 46 46 H 1.08003 * 119.98420 * 179.72107 * 25 24 23 47 47 H 1.08003 * 119.97679 * 179.74580 * 28 26 25 48 48 H 1.08003 * 120.01795 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0401 -0.7212 -1.2493 6 7 3.5090 -0.7206 -1.2496 7 6 4.0350 0.6434 -1.3943 8 6 4.0356 -1.6020 -2.3002 9 1 3.5494 -2.5754 -2.2352 10 6 3.7571 -0.9836 -3.6717 11 6 5.5220 -1.7695 -2.1171 12 8 6.1424 -0.9783 -1.4388 13 7 6.1618 -2.7986 -2.7070 14 6 5.4311 -3.6994 -3.6018 15 6 4.7627 -4.7797 -2.7908 16 1 4.8711 -4.7934 -1.7164 17 6 4.0120 -5.7497 -3.4205 18 7 3.8795 -5.7326 -4.7288 19 14 3.1830 -7.0882 -2.4153 20 1 1.8223 -6.6416 -2.0228 21 1 3.0822 -8.3270 -3.2279 22 1 3.9856 -7.3602 -1.1957 23 6 7.5252 -3.0068 -2.4648 24 6 8.1520 -4.1460 -2.9518 25 6 9.4955 -4.3520 -2.7073 26 6 10.2202 -3.4178 -1.9862 27 9 11.5354 -3.6188 -1.7521 28 6 9.5971 -2.2807 -1.4999 29 6 8.2524 -2.0739 -1.7374 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.7211 -1.5952 1.2328 34 1 1.6766 -0.2073 -2.1392 35 1 1.6767 -1.7488 -1.2493 36 1 3.7435 1.0441 -2.3652 37 1 3.6292 1.2750 -0.6039 38 1 5.1223 0.6232 -1.3211 39 1 2.6940 -0.7601 -3.7605 40 1 4.3320 -0.0636 -3.7789 41 1 4.0471 -1.6864 -4.4529 42 1 4.6754 -3.1349 -4.1478 43 1 6.1265 -4.1531 -4.3079 44 1 3.3518 -6.4152 -5.1718 45 1 7.5881 -4.8728 -3.5177 46 1 9.9824 -5.2402 -3.0821 47 1 10.1631 -1.5553 -0.9343 48 1 7.7668 -1.1871 -1.3576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159538107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:59 Heat of formation + Delta-G solvation = -73.992794 kcal Electronic energy + Delta-G solvation = -30782.933461 eV Core-core repulsion = 26560.613808 eV Total energy + Delta-G solvation = -4222.319653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.43446 -40.56771 -38.71786 -37.61342 -35.93337 -35.36432 -32.78110 -31.69102 -30.63901 -30.29495 -28.69869 -27.36014 -26.98363 -25.38681 -23.69054 -23.16460 -22.30537 -21.42934 -20.51949 -18.84004 -17.34481 -17.14568 -16.91813 -16.36275 -16.05096 -15.90097 -15.53157 -15.19007 -15.12607 -14.75813 -14.61209 -14.09600 -13.98036 -13.88138 -13.53669 -13.42157 -13.07842 -12.74336 -12.63855 -12.47469 -12.34833 -12.29187 -12.07593 -11.92782 -11.91084 -11.43660 -11.28517 -11.27144 -11.17151 -10.95358 -10.74837 -10.65415 -10.58054 -10.34580 -10.12324 -9.94028 -9.17812 -8.77940 -8.63647 -8.61047 -7.93046 -7.23108 -6.36038 -4.45013 1.58173 1.73856 3.05534 3.12285 3.21326 3.26445 3.41411 4.10494 4.17914 4.25110 4.59390 4.76971 4.78449 4.87559 4.98268 5.09143 5.14094 5.27184 5.29427 5.33527 5.36873 5.49840 5.60442 5.65533 5.76365 5.78095 5.81583 5.83364 5.87972 5.94872 5.99879 6.10944 6.14637 6.28036 6.35413 6.47002 6.59671 6.69747 6.75121 6.82539 6.98134 7.14732 7.23686 7.31112 7.56839 7.66692 7.80102 7.81698 7.99609 8.59305 8.72589 9.23591 10.69881 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.004555 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.869550 B = 6146.230629 C = 8438.927404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.108 3.892 3 H 0.095 0.905 4 O -0.550 6.550 5 C 0.020 3.980 6 N -0.509 5.509 7 C 0.005 3.995 8 C 0.067 3.933 9 H 0.129 0.871 10 C -0.183 4.183 11 C 0.535 3.465 12 O -0.528 6.528 13 N -0.533 5.533 14 C 0.219 3.781 15 C -0.543 4.543 16 H 0.065 0.935 17 C 0.070 3.930 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.271 1.271 23 C 0.165 3.835 24 C -0.121 4.121 25 C -0.134 4.134 26 C 0.049 3.951 27 F -0.153 7.153 28 C -0.137 4.137 29 C -0.154 4.154 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.373 0.627 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.019 0.981 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.268 0.732 45 H 0.147 0.853 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 8.583 2.536 9.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.048 3.952 3 H 0.113 0.887 4 O -0.355 6.355 5 C -0.108 4.108 6 N -0.232 5.232 7 C -0.143 4.143 8 C -0.044 4.044 9 H 0.147 0.853 10 C -0.242 4.242 11 C 0.325 3.675 12 O -0.408 6.408 13 N -0.252 5.252 14 C 0.101 3.899 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C 0.068 3.932 24 C -0.141 4.141 25 C -0.153 4.153 26 C 0.029 3.971 27 F -0.132 7.132 28 C -0.156 4.156 29 C -0.173 4.173 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.220 0.780 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.037 0.963 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.146 0.854 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.735 9.284 3.266 9.993 hybrid contribution -0.885 -1.390 -0.637 1.767 sum -2.620 7.894 2.629 8.723 Atomic orbital electron populations 1.22499 0.96640 1.02678 1.02494 1.21879 0.91811 0.96738 0.84778 0.88721 1.86589 1.77376 1.28742 1.42753 1.22923 0.88642 1.01679 0.97565 1.61839 1.05998 1.09965 1.45378 1.22840 1.04251 0.88620 0.98578 1.21699 0.92596 0.99961 0.90186 0.85318 1.22460 1.02093 1.01857 0.97805 1.20466 0.89576 0.79662 0.77779 1.90126 1.66532 1.43767 1.40365 1.46007 1.06898 1.28110 1.44187 1.19929 0.92354 0.88670 0.88993 1.21396 1.31780 1.10731 0.94217 0.91672 1.24903 0.95938 0.97632 0.94931 1.69902 1.39677 1.35029 1.07886 0.86495 0.79839 0.81047 0.80230 1.20360 1.20961 1.19550 1.18121 0.83862 0.94483 0.96740 1.20979 0.93839 0.97282 1.02048 1.20846 0.94356 0.99345 1.00758 1.17726 0.78001 0.97624 1.03760 1.91420 1.33036 1.95349 1.93394 1.21068 0.95619 0.96853 1.02068 1.22718 0.92854 1.02450 0.99312 0.92134 0.91791 0.91801 0.78034 0.94016 0.90184 0.96273 0.92157 0.87937 0.91756 0.92324 0.90005 0.92859 0.93402 0.92250 0.83492 0.85171 0.85438 0.79518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.65 9.53 37.16 0.35 -1.30 16 2 C 0.11 1.23 3.46 -26.73 -0.09 1.13 16 3 H 0.09 1.10 6.47 -51.93 -0.34 0.76 16 4 O -0.55 -7.35 13.20 -35.23 -0.47 -7.82 16 5 C 0.02 0.26 4.20 -3.82 -0.02 0.24 16 6 N -0.51 -7.89 4.46 -236.28 -1.05 -8.95 16 7 C 0.00 0.07 8.50 60.07 0.51 0.58 16 8 C 0.07 1.14 1.92 -68.86 -0.13 1.00 16 9 H 0.13 2.44 6.41 -51.93 -0.33 2.11 16 10 C -0.18 -2.74 8.10 37.16 0.30 -2.44 16 11 C 0.53 10.30 6.76 -10.99 -0.07 10.23 16 12 O -0.53 -10.49 10.13 5.55 0.06 -10.44 16 13 N -0.53 -10.72 2.70 -114.72 -0.31 -11.03 16 14 C 0.22 4.72 4.26 -5.19 -0.02 4.70 16 15 C -0.54 -12.91 8.27 -34.44 -0.28 -13.19 16 16 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -22.43 13.29 55.43 0.74 -21.70 16 19 Si 0.90 19.32 29.54 -169.99 -5.02 14.30 16 20 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C 0.16 3.23 6.49 -83.66 -0.54 2.68 16 24 C -0.12 -2.25 9.16 -39.40 -0.36 -2.61 16 25 C -0.13 -2.24 10.02 -39.54 -0.40 -2.64 16 26 C 0.05 0.83 7.30 -39.40 -0.29 0.54 16 27 F -0.15 -2.52 17.26 2.25 0.04 -2.48 16 28 C -0.14 -2.28 10.02 -39.54 -0.40 -2.68 16 29 C -0.15 -2.84 9.05 -39.40 -0.36 -3.20 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.37 3.98 9.04 45.56 0.41 4.40 16 34 H 0.04 0.49 6.92 -51.93 -0.36 0.13 16 35 H 0.08 1.03 7.93 -51.93 -0.41 0.62 16 36 H 0.02 0.25 6.35 -51.93 -0.33 -0.08 16 37 H 0.06 0.80 6.30 -51.93 -0.33 0.48 16 38 H 0.10 1.70 5.30 -51.93 -0.28 1.43 16 39 H 0.06 0.85 6.66 -51.93 -0.35 0.51 16 40 H 0.06 0.84 6.71 -51.93 -0.35 0.49 16 41 H 0.08 1.32 5.68 -51.93 -0.29 1.03 16 42 H 0.05 1.15 4.64 -51.93 -0.24 0.91 16 43 H 0.05 1.08 6.26 -51.93 -0.33 0.76 16 44 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 45 H 0.15 2.84 6.25 -52.49 -0.33 2.51 16 46 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 47 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 48 H 0.19 3.57 4.54 -56.18 -0.26 3.32 16 LS Contribution 376.54 15.07 5.67 5.67 Total: -1.00 -26.65 376.54 -7.99 -34.64 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -5.76 Total: 13.13 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.89 Total: -5.33 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: -0.63 Total: -41.67 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.41 Total: -18.26 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -26.65 -7.99 -34.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159538107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.353 kcal (2) G-P(sol) polarization free energy of solvation -26.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds