Wall clock time and date at job start Tue Mar 31 2020 20:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46916 * 2 1 4 4 O 1.42901 * 109.47278 * 120.00453 * 2 1 3 5 5 C 1.53004 * 109.47181 * 240.00478 * 2 1 3 6 6 N 1.46896 * 109.46912 * 179.97438 * 5 2 1 7 7 C 1.46905 * 111.00180 * 293.94957 * 6 5 2 8 8 C 1.46901 * 110.99763 * 170.00213 * 6 5 2 9 9 H 1.09001 * 109.46870 * 309.99883 * 8 6 5 10 10 C 1.53001 * 109.47399 * 69.99414 * 8 6 5 11 11 C 1.50701 * 109.47071 * 189.99935 * 8 6 5 12 12 O 1.21291 * 119.99805 * 341.58278 * 11 8 6 13 13 N 1.34774 * 119.99771 * 161.58591 * 11 8 6 14 14 C 1.46497 * 120.00301 * 4.29514 * 13 11 8 15 15 C 1.50707 * 109.47262 * 274.60092 * 14 13 11 16 16 H 1.07996 * 119.99555 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00093 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00393 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99926 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47695 * 89.99742 * 19 17 15 21 21 H 1.48502 * 109.47365 * 210.00096 * 19 17 15 22 22 H 1.48506 * 109.47216 * 329.99611 * 19 17 15 23 23 C 1.40028 * 120.00096 * 184.29546 * 13 11 8 24 24 C 1.38850 * 120.05078 * 172.94468 * 23 13 11 25 25 C 1.38107 * 119.95811 * 180.25342 * 24 23 13 26 26 C 1.38477 * 120.04542 * 359.47045 * 25 24 23 27 27 F 1.35098 * 119.95866 * 180.23507 * 26 25 24 28 28 C 1.38483 * 120.08769 * 0.50973 * 26 25 24 29 29 C 1.38115 * 120.04263 * 359.76764 * 28 26 25 30 30 H 1.09003 * 109.46916 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46944 * 299.99677 * 1 2 3 32 32 H 1.08992 * 109.47286 * 59.99529 * 1 2 3 33 33 H 0.96690 * 113.99964 * 59.99705 * 4 2 1 34 34 H 1.08996 * 109.46616 * 59.99539 * 5 2 1 35 35 H 1.09002 * 109.46490 * 300.00035 * 5 2 1 36 36 H 1.08998 * 109.47199 * 296.05083 * 7 6 5 37 37 H 1.09005 * 109.46621 * 56.04953 * 7 6 5 38 38 H 1.08995 * 109.46972 * 176.04771 * 7 6 5 39 39 H 1.09001 * 109.47148 * 306.24406 * 10 8 6 40 40 H 1.09004 * 109.46620 * 66.24354 * 10 8 6 41 41 H 1.09004 * 109.47201 * 186.24277 * 10 8 6 42 42 H 1.08996 * 109.47128 * 34.60424 * 14 13 11 43 43 H 1.08997 * 109.47424 * 154.60740 * 14 13 11 44 44 H 0.96991 * 120.00377 * 179.97438 * 18 17 15 45 45 H 1.08001 * 120.01798 * 359.97438 * 24 23 13 46 46 H 1.08003 * 119.98420 * 179.72107 * 25 24 23 47 47 H 1.08003 * 119.97679 * 179.74580 * 28 26 25 48 48 H 1.08003 * 120.01795 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0401 -0.7212 -1.2493 6 7 3.5090 -0.7206 -1.2496 7 6 4.0350 0.6434 -1.3943 8 6 4.0356 -1.6020 -2.3002 9 1 3.5494 -2.5754 -2.2352 10 6 3.7571 -0.9836 -3.6717 11 6 5.5220 -1.7695 -2.1171 12 8 6.1424 -0.9783 -1.4388 13 7 6.1618 -2.7986 -2.7070 14 6 5.4311 -3.6994 -3.6018 15 6 4.7627 -4.7797 -2.7908 16 1 4.8711 -4.7934 -1.7164 17 6 4.0120 -5.7497 -3.4205 18 7 3.8795 -5.7326 -4.7288 19 14 3.1830 -7.0882 -2.4153 20 1 1.8223 -6.6416 -2.0228 21 1 3.0822 -8.3270 -3.2279 22 1 3.9856 -7.3602 -1.1957 23 6 7.5252 -3.0068 -2.4648 24 6 8.1520 -4.1460 -2.9518 25 6 9.4955 -4.3520 -2.7073 26 6 10.2202 -3.4178 -1.9862 27 9 11.5354 -3.6188 -1.7521 28 6 9.5971 -2.2807 -1.4999 29 6 8.2524 -2.0739 -1.7374 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.7211 -1.5952 1.2328 34 1 1.6766 -0.2073 -2.1392 35 1 1.6767 -1.7488 -1.2493 36 1 3.7435 1.0441 -2.3652 37 1 3.6292 1.2750 -0.6039 38 1 5.1223 0.6232 -1.3211 39 1 2.6940 -0.7601 -3.7605 40 1 4.3320 -0.0636 -3.7789 41 1 4.0471 -1.6864 -4.4529 42 1 4.6754 -3.1349 -4.1478 43 1 6.1265 -4.1531 -4.3079 44 1 3.3518 -6.4152 -5.1718 45 1 7.5881 -4.8728 -3.5177 46 1 9.9824 -5.2402 -3.0821 47 1 10.1631 -1.5553 -0.9343 48 1 7.7668 -1.1871 -1.3576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159538107.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:58 Heat of formation + Delta-G solvation = -90.329187 kcal Electronic energy + Delta-G solvation = -30783.641860 eV Core-core repulsion = 26560.613808 eV Total energy + Delta-G solvation = -4223.028053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.77880 -42.03335 -39.95573 -38.84535 -37.09912 -36.95993 -34.60264 -32.78520 -32.04837 -31.41543 -30.14917 -29.03105 -28.03626 -26.60068 -25.33070 -24.47919 -23.73359 -22.65401 -21.69075 -20.26813 -18.83217 -18.66100 -18.57476 -17.75995 -17.23694 -16.88432 -16.75037 -16.59040 -16.50564 -16.30424 -16.13657 -15.41384 -15.33103 -15.09343 -14.71437 -14.57514 -14.47880 -14.32132 -14.01782 -13.78196 -13.72472 -13.57703 -13.25923 -13.17469 -12.96299 -12.90481 -12.79152 -12.56349 -12.47397 -12.33291 -12.21266 -12.12959 -11.98393 -11.82866 -11.54812 -10.91273 -10.79948 -10.61915 -10.07921 -10.01952 -9.12276 -8.75368 -8.21861 -6.37140 0.14985 0.33188 1.40204 1.44765 1.51705 1.60477 1.95902 2.39432 2.77128 2.96289 3.07576 3.37636 3.46624 3.69063 3.82845 3.91936 3.98205 4.07059 4.22240 4.23506 4.28135 4.33909 4.40537 4.44494 4.51230 4.58595 4.64949 4.66606 4.77746 4.83116 4.89702 4.92273 5.01390 5.08817 5.16530 5.21074 5.23792 5.28133 5.31256 5.34444 5.42113 5.64349 5.71354 5.96149 6.00684 6.17427 6.19205 6.42307 6.74122 6.95371 7.17339 7.34359 8.81754 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008377 B = 0.004555 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3341.869550 B = 6146.230629 C = 8438.927404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.110 3.890 3 H 0.094 0.906 4 O -0.573 6.573 5 C 0.021 3.979 6 N -0.524 5.524 7 C 0.010 3.990 8 C 0.074 3.926 9 H 0.107 0.893 10 C -0.174 4.174 11 C 0.526 3.474 12 O -0.536 6.536 13 N -0.539 5.539 14 C 0.233 3.767 15 C -0.543 4.543 16 H 0.048 0.952 17 C 0.035 3.965 18 N -0.912 5.912 19 Si 0.948 3.052 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.141 3.859 24 C -0.132 4.132 25 C -0.126 4.126 26 C 0.050 3.950 27 F -0.147 7.147 28 C -0.129 4.129 29 C -0.161 4.161 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.382 0.618 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.034 0.966 44 H 0.270 0.730 45 H 0.135 0.865 46 H 0.155 0.845 47 H 0.154 0.846 48 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 9.096 2.955 9.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.050 3.950 3 H 0.112 0.888 4 O -0.379 6.379 5 C -0.107 4.107 6 N -0.248 5.248 7 C -0.137 4.137 8 C -0.037 4.037 9 H 0.125 0.875 10 C -0.233 4.233 11 C 0.318 3.682 12 O -0.417 6.417 13 N -0.258 5.258 14 C 0.114 3.886 15 C -0.581 4.581 16 H 0.067 0.933 17 C -0.167 4.167 18 N -0.550 5.550 19 Si 0.774 3.226 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.203 1.203 23 C 0.045 3.955 24 C -0.153 4.153 25 C -0.145 4.145 26 C 0.030 3.970 27 F -0.126 7.126 28 C -0.148 4.148 29 C -0.181 4.181 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.230 0.770 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.052 0.948 44 H 0.079 0.921 45 H 0.152 0.848 46 H 0.172 0.828 47 H 0.172 0.828 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -2.182 9.805 3.692 10.702 hybrid contribution -0.655 -1.524 -0.726 1.811 sum -2.837 8.281 2.966 9.242 Atomic orbital electron populations 1.22413 0.94463 1.03241 1.03355 1.21939 0.93415 0.96153 0.83470 0.88833 1.86551 1.78040 1.29656 1.43653 1.23005 0.86773 1.01926 0.98974 1.61825 1.07834 1.10233 1.44915 1.22738 1.02789 0.88339 0.99835 1.21536 0.90771 0.99598 0.91844 0.87488 1.22373 1.03469 1.01456 0.95954 1.20957 0.90594 0.79254 0.77430 1.90132 1.67046 1.43898 1.40593 1.45988 1.07275 1.28183 1.44352 1.19626 0.91887 0.88383 0.88689 1.21439 1.31793 1.11422 0.93475 0.93327 1.25449 0.96428 0.99160 0.95641 1.69968 1.40431 1.35766 1.08841 0.85704 0.79242 0.79008 0.78689 1.19408 1.20768 1.20258 1.18422 0.83894 0.95412 0.97800 1.20927 0.94681 0.97011 1.02665 1.21057 0.93543 1.00053 0.99878 1.17762 0.78227 0.97571 1.03487 1.91440 1.32541 1.95302 1.93306 1.21299 0.94956 0.97192 1.01333 1.22659 0.93614 1.02143 0.99663 0.91739 0.91377 0.90465 0.77014 0.92473 0.90627 0.94811 0.91008 0.90235 0.89711 0.91633 0.91501 0.92752 0.94798 0.92111 0.84759 0.82764 0.82841 0.80183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 9.53 71.98 0.69 -2.07 16 2 C 0.11 2.32 3.46 30.60 0.11 2.43 16 3 H 0.09 2.00 6.47 -2.39 -0.02 1.98 16 4 O -0.57 -14.80 13.20 -148.98 -1.97 -16.77 16 5 C 0.02 0.50 4.20 86.31 0.36 0.87 16 6 N -0.52 -15.97 4.46 -901.46 -4.02 -19.99 16 7 C 0.01 0.29 8.50 127.69 1.09 1.38 16 8 C 0.07 2.53 1.92 44.17 0.08 2.61 16 9 H 0.11 4.14 6.41 -2.39 -0.02 4.13 16 10 C -0.17 -5.09 8.10 71.98 0.58 -4.51 16 11 C 0.53 20.67 6.76 87.66 0.59 21.26 16 12 O -0.54 -21.64 10.13 -3.06 -0.03 -21.67 16 13 N -0.54 -22.25 2.70 -635.24 -1.71 -23.96 16 14 C 0.23 10.37 4.26 85.64 0.36 10.73 16 15 C -0.54 -26.35 8.27 25.60 0.21 -26.14 16 16 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 17 C 0.03 1.70 5.46 84.65 0.46 2.17 16 18 N -0.91 -46.36 13.29 21.45 0.28 -46.07 16 19 Si 0.95 39.58 29.54 68.60 2.03 41.60 16 20 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 23 C 0.14 5.61 6.49 38.13 0.25 5.86 16 24 C -0.13 -4.97 9.16 22.39 0.20 -4.76 16 25 C -0.13 -4.09 10.02 22.30 0.22 -3.87 16 26 C 0.05 1.59 7.30 22.39 0.16 1.75 16 27 F -0.15 -4.50 17.26 44.97 0.78 -3.72 16 28 C -0.13 -4.11 10.02 22.30 0.22 -3.88 16 29 C -0.16 -5.93 9.05 22.39 0.20 -5.73 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.38 7.93 9.04 -74.06 -0.67 7.26 16 34 H 0.06 1.19 6.92 -2.39 -0.02 1.18 16 35 H 0.08 1.87 7.93 -2.39 -0.02 1.85 16 36 H 0.03 0.83 6.35 -2.39 -0.02 0.82 16 37 H 0.07 1.82 6.30 -2.38 -0.02 1.81 16 38 H 0.08 2.63 5.30 -2.39 -0.01 2.62 16 39 H 0.08 2.11 6.66 -2.39 -0.02 2.09 16 40 H 0.06 1.82 6.71 -2.38 -0.02 1.80 16 41 H 0.07 2.17 5.68 -2.39 -0.01 2.15 16 42 H 0.05 2.41 4.64 -2.39 -0.01 2.40 16 43 H 0.03 1.60 6.26 -2.39 -0.01 1.58 16 44 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 45 H 0.13 5.36 6.25 -2.91 -0.02 5.34 16 46 H 0.15 4.17 8.06 -2.91 -0.02 4.14 16 47 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 48 H 0.18 6.95 4.54 -61.44 -0.28 6.67 16 Total: -1.00 -56.31 376.54 1.24 -55.07 By element: Atomic # 1 Polarization: 37.34 SS G_CDS: 0.07 Total: 37.41 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.80 Total: -1.90 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -5.45 Total: -90.02 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -2.00 Total: -38.44 kcal Atomic # 9 Polarization: -4.50 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.60 kcal Total: -56.31 1.24 -55.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159538107.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.261 kcal (2) G-P(sol) polarization free energy of solvation -56.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds