Wall clock time and date at job start Tue Mar 31 2020 20:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47184 * 2 1 4 4 C 1.50694 * 109.47545 * 120.00091 * 2 1 3 5 5 H 1.08001 * 119.99830 * 119.99363 * 4 2 1 6 6 C 1.37872 * 120.00051 * 299.99985 * 4 2 1 7 7 N 1.31513 * 120.00109 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00001 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46981 * 89.99917 * 8 6 4 10 10 H 1.48498 * 109.47318 * 210.00044 * 8 6 4 11 11 H 1.48501 * 109.47046 * 330.00031 * 8 6 4 12 12 N 1.46902 * 109.46913 * 240.00668 * 2 1 3 13 13 C 1.46898 * 111.00067 * 183.95376 * 12 2 1 14 14 C 1.46894 * 111.00334 * 59.99295 * 12 2 1 15 15 C 1.50695 * 109.47454 * 190.00174 * 14 12 2 16 16 O 1.21286 * 120.00074 * 0.02562 * 15 14 12 17 17 N 1.34775 * 120.00234 * 180.02562 * 15 14 12 18 18 C 1.46498 * 120.00217 * 0.02562 * 17 15 14 19 19 C 1.46504 * 119.99889 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.47196 * 89.99968 * 19 17 15 21 21 O 1.42893 * 109.47267 * 64.99900 * 20 19 17 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 19 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46476 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47135 * 59.99281 * 1 2 3 31 31 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99705 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46886 * 296.04068 * 13 12 2 34 34 H 1.08997 * 109.47299 * 56.04310 * 13 12 2 35 35 H 1.09004 * 109.47340 * 176.04275 * 13 12 2 36 36 H 1.09004 * 109.47114 * 70.00271 * 14 12 2 37 37 H 1.09000 * 109.47686 * 310.00889 * 14 12 2 38 38 H 1.09007 * 109.47202 * 270.00211 * 18 17 15 39 39 H 1.08999 * 109.46876 * 29.99857 * 18 17 15 40 40 H 1.08997 * 109.47126 * 150.00391 * 18 17 15 41 41 H 1.08997 * 109.47296 * 329.99067 * 19 17 15 42 42 H 1.09007 * 109.46911 * 209.99518 * 19 17 15 43 43 H 1.08994 * 109.46599 * 304.99374 * 20 19 17 44 44 H 1.09001 * 109.46881 * 185.00032 * 20 19 17 45 45 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 46 46 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 47 47 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9437 0.8302 2.6034 8 14 2.3217 -1.1204 4.0078 9 1 3.6300 -0.5460 4.4121 10 1 1.3435 -0.9494 5.1120 11 1 2.4861 -2.5663 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8577 -0.8909 -3.6160 16 8 2.4153 -1.9574 -3.4648 17 7 1.5147 -0.4792 -4.8526 18 6 0.8418 0.8092 -5.0353 19 6 1.8149 -1.3201 -6.0141 20 6 0.6387 -2.2620 -6.2794 21 8 -0.5091 -1.4973 -6.6529 22 6 -1.6485 -2.1872 -6.9256 23 6 -1.6608 -3.5708 -6.8361 24 6 -2.8197 -4.2702 -7.1142 25 6 -3.9675 -3.5922 -7.4811 26 6 -3.9595 -2.2127 -7.5716 27 6 -2.8023 -1.5073 -7.2944 28 9 -2.7943 -0.1592 -7.3822 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.7092 1.1612 3.4844 33 1 3.9191 0.2044 -1.2302 34 1 3.8069 -1.2915 -0.2722 35 1 3.8163 -1.3720 -2.0502 36 1 2.0517 0.9347 -2.5281 37 1 0.4721 0.1326 -2.3563 38 1 -0.2375 0.6663 -4.9816 39 1 1.1565 1.4979 -4.2513 40 1 1.1055 1.2220 -6.0090 41 1 2.7124 -1.9061 -5.8163 42 1 1.9786 -0.6884 -6.8873 43 1 0.4182 -2.8310 -5.3764 44 1 0.8971 -2.9474 -7.0867 45 1 -0.7652 -4.1017 -6.5489 46 1 -2.8303 -5.3476 -7.0401 47 1 -4.8717 -4.1415 -7.6983 48 1 -4.8575 -1.6854 -7.8581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161724988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:28 Heat of formation + Delta-G solvation = -67.466492 kcal Electronic energy + Delta-G solvation = -29694.778986 eV Core-core repulsion = 25472.742335 eV Total energy + Delta-G solvation = -4222.036652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.95783 -40.39839 -39.62828 -37.78599 -36.56707 -35.30974 -32.74222 -31.40159 -30.98789 -29.69136 -29.12998 -27.82186 -26.46319 -25.01607 -24.17402 -23.26791 -22.75482 -22.05303 -19.76672 -18.89101 -18.60885 -17.40324 -16.90761 -16.78219 -16.75481 -16.17031 -15.84724 -15.55496 -15.31848 -15.05167 -14.77386 -14.65214 -14.23656 -13.75901 -13.62792 -13.58299 -13.11557 -12.93865 -12.71097 -12.57011 -12.50326 -12.40102 -12.21118 -12.11843 -11.82076 -11.56686 -11.36980 -11.18888 -11.06909 -10.96101 -10.74755 -10.64205 -10.13923 -10.07520 -9.93335 -9.26381 -9.24173 -8.85400 -8.62236 -8.47041 -8.40911 -7.13629 -6.00004 -4.03596 0.81098 0.96056 2.74524 2.93836 3.08487 3.27599 3.32628 3.38973 3.44436 3.96440 4.38581 4.42766 4.50299 4.65859 4.76153 4.84118 4.90653 4.93250 5.03400 5.11844 5.14400 5.21730 5.33221 5.45309 5.47554 5.54630 5.65382 5.73788 5.79616 5.85779 5.86844 5.91116 6.06558 6.33711 6.34860 6.46362 6.55218 6.80774 6.93394 7.02282 7.03462 7.15583 7.41608 7.52303 7.71883 7.85374 8.20202 8.32747 8.47321 8.61989 9.03148 9.61178 11.07200 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.002488 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.877524 B =11249.968628 C =11815.814363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.501 4.501 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.520 5.520 13 C 0.033 3.967 14 C 0.035 3.965 15 C 0.517 3.483 16 O -0.520 6.520 17 N -0.623 5.623 18 C 0.085 3.915 19 C 0.123 3.877 20 C 0.040 3.960 21 O -0.302 6.302 22 C 0.104 3.896 23 C -0.183 4.183 24 C -0.089 4.089 25 C -0.133 4.133 26 C -0.118 4.118 27 C 0.065 3.935 28 F -0.133 7.133 29 H 0.087 0.913 30 H 0.006 0.994 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.003 0.997 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.106 0.894 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.346 -4.497 -24.081 25.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.246 5.246 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.306 3.694 16 O -0.395 6.395 17 N -0.359 5.359 18 C -0.059 4.059 19 C -0.001 4.001 20 C -0.036 4.036 21 O -0.215 6.215 22 C 0.057 3.943 23 C -0.202 4.202 24 C -0.107 4.107 25 C -0.152 4.152 26 C -0.136 4.136 27 C 0.045 3.955 28 F -0.111 7.111 29 H 0.106 0.894 30 H 0.025 0.975 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.256 -5.163 -23.812 25.156 hybrid contribution 0.503 0.526 0.823 1.099 sum -5.752 -4.637 -22.989 24.147 Atomic orbital electron populations 1.21878 0.97752 0.99787 0.99820 1.19297 0.92303 0.91978 0.85752 0.98359 1.21147 1.30911 1.12297 0.89578 0.91690 1.24924 0.95211 0.95114 0.99013 1.69886 1.37020 1.23119 1.23413 0.86504 0.78406 0.80165 0.82401 1.20796 1.21270 1.19787 1.61873 1.10249 1.51876 1.00561 1.22354 0.87863 0.98436 1.02842 1.22055 1.02792 0.94515 0.90285 1.21111 0.77447 0.87158 0.83665 1.90626 1.40895 1.23039 1.84930 1.47914 1.61007 1.20903 1.06116 1.21778 0.97665 0.84089 1.02326 1.21442 0.95731 0.93992 0.88918 1.23479 0.84586 0.95134 1.00370 1.86144 1.17372 1.35606 1.82399 1.19047 0.86619 0.91065 0.97584 1.21242 1.00750 0.92035 1.06148 1.21048 0.92021 1.00399 0.97223 1.20928 0.98943 0.93199 1.02103 1.21031 0.96576 0.94949 1.01078 1.17011 0.93149 0.77391 1.07901 1.91505 1.97005 1.28435 1.94192 0.89441 0.97476 0.94546 0.93000 0.97831 0.90490 0.91996 0.93259 0.87966 0.92269 0.90959 0.91338 0.87594 0.89649 0.90891 0.91056 0.84441 0.85045 0.84904 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 8.76 37.16 0.33 -2.98 16 2 C 0.21 5.46 2.06 -68.87 -0.14 5.32 16 3 H 0.00 -0.03 8.14 -51.92 -0.42 -0.45 16 4 C -0.50 -14.00 7.88 -34.44 -0.27 -14.27 16 5 H 0.07 1.84 6.41 -52.49 -0.34 1.50 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.60 11.32 55.43 0.63 -24.97 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -11.91 4.36 -237.74 -1.04 -12.95 16 13 C 0.03 0.72 8.93 60.06 0.54 1.26 16 14 C 0.03 0.65 3.82 -4.98 -0.02 0.63 16 15 C 0.52 8.87 7.40 -10.99 -0.08 8.79 16 16 O -0.52 -10.42 13.89 5.55 0.08 -10.34 16 17 N -0.62 -8.18 2.84 -181.57 -0.52 -8.69 16 18 C 0.08 0.92 9.89 59.85 0.59 1.51 16 19 C 0.12 1.29 5.86 -4.04 -0.02 1.26 16 20 C 0.04 0.42 5.08 37.16 0.19 0.61 16 21 O -0.30 -3.58 9.56 -19.60 -0.19 -3.77 16 22 C 0.10 1.18 6.69 -39.18 -0.26 0.92 16 23 C -0.18 -1.74 9.04 -39.45 -0.36 -2.09 16 24 C -0.09 -0.70 10.04 -39.59 -0.40 -1.10 16 25 C -0.13 -1.00 10.04 -39.57 -0.40 -1.40 16 26 C -0.12 -1.03 10.02 -39.54 -0.40 -1.42 16 27 C 0.07 0.74 7.31 -39.30 -0.29 0.45 16 28 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 30 H 0.01 0.14 6.20 -51.93 -0.32 -0.18 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.08 1.77 6.10 -51.93 -0.32 1.45 16 35 H 0.06 1.29 5.88 -51.93 -0.31 0.98 16 36 H 0.05 0.86 7.38 -51.93 -0.38 0.48 16 37 H 0.10 1.87 5.79 -51.93 -0.30 1.57 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 40 H 0.07 0.60 7.89 -51.93 -0.41 0.19 16 41 H 0.11 1.14 7.42 -51.93 -0.39 0.75 16 42 H 0.09 0.71 7.89 -51.92 -0.41 0.30 16 43 H 0.07 0.89 7.66 -51.93 -0.40 0.49 16 44 H 0.07 0.55 7.66 -51.93 -0.40 0.15 16 45 H 0.14 1.14 6.30 -52.48 -0.33 0.80 16 46 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 48 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.86 388.22 -8.29 -41.15 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.04 Total: -0.27 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.09 Total: -0.98 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.92 Total: -46.61 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.11 Total: -14.11 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.86 -8.29 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161724988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.314 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds