Wall clock time and date at job start Tue Mar 31 2020 20:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.47184 * 2 1 4 4 C 1.50694 * 109.47545 * 120.00091 * 2 1 3 5 5 H 1.08001 * 119.99830 * 119.99363 * 4 2 1 6 6 C 1.37872 * 120.00051 * 299.99985 * 4 2 1 7 7 N 1.31513 * 120.00109 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00001 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46981 * 89.99917 * 8 6 4 10 10 H 1.48498 * 109.47318 * 210.00044 * 8 6 4 11 11 H 1.48501 * 109.47046 * 330.00031 * 8 6 4 12 12 N 1.46902 * 109.46913 * 240.00668 * 2 1 3 13 13 C 1.46898 * 111.00067 * 183.95376 * 12 2 1 14 14 C 1.46894 * 111.00334 * 59.99295 * 12 2 1 15 15 C 1.50695 * 109.47454 * 190.00174 * 14 12 2 16 16 O 1.21286 * 120.00074 * 0.02562 * 15 14 12 17 17 N 1.34775 * 120.00234 * 180.02562 * 15 14 12 18 18 C 1.46498 * 120.00217 * 0.02562 * 17 15 14 19 19 C 1.46504 * 119.99889 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.47196 * 89.99968 * 19 17 15 21 21 O 1.42893 * 109.47267 * 64.99900 * 20 19 17 22 22 C 1.35956 * 117.00026 * 179.97438 * 21 20 19 23 23 C 1.38657 * 120.06128 * 359.97438 * 22 21 20 24 24 C 1.38184 * 119.96964 * 180.02562 * 23 22 21 25 25 C 1.38265 * 120.09281 * 359.97438 * 24 23 22 26 26 C 1.38248 * 120.12705 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03366 * 359.97438 * 26 25 24 28 28 F 1.35103 * 120.05240 * 180.02562 * 27 26 25 29 29 H 1.09003 * 109.46476 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47135 * 59.99281 * 1 2 3 31 31 H 1.08998 * 109.47100 * 180.02562 * 1 2 3 32 32 H 0.96995 * 119.99705 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46886 * 296.04068 * 13 12 2 34 34 H 1.08997 * 109.47299 * 56.04310 * 13 12 2 35 35 H 1.09004 * 109.47340 * 176.04275 * 13 12 2 36 36 H 1.09004 * 109.47114 * 70.00271 * 14 12 2 37 37 H 1.09000 * 109.47686 * 310.00889 * 14 12 2 38 38 H 1.09007 * 109.47202 * 270.00211 * 18 17 15 39 39 H 1.08999 * 109.46876 * 29.99857 * 18 17 15 40 40 H 1.08997 * 109.47126 * 150.00391 * 18 17 15 41 41 H 1.08997 * 109.47296 * 329.99067 * 19 17 15 42 42 H 1.09007 * 109.46911 * 209.99518 * 19 17 15 43 43 H 1.08994 * 109.46599 * 304.99374 * 20 19 17 44 44 H 1.09001 * 109.46881 * 185.00032 * 20 19 17 45 45 H 1.08004 * 120.01774 * 0.03769 * 23 22 21 46 46 H 1.08000 * 119.95526 * 180.27319 * 24 23 22 47 47 H 1.08001 * 119.93128 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98480 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2394 2.4826 7 7 0.9437 0.8302 2.6034 8 14 2.3217 -1.1204 4.0078 9 1 3.6300 -0.5460 4.4121 10 1 1.3435 -0.9494 5.1120 11 1 2.4861 -2.5663 3.7118 12 7 2.0196 -0.6924 -1.1995 13 6 3.4850 -0.7944 -1.1872 14 6 1.5485 -0.0263 -2.4211 15 6 1.8577 -0.8909 -3.6160 16 8 2.4153 -1.9574 -3.4648 17 7 1.5147 -0.4792 -4.8526 18 6 0.8418 0.8092 -5.0353 19 6 1.8149 -1.3201 -6.0141 20 6 0.6387 -2.2620 -6.2794 21 8 -0.5091 -1.4973 -6.6529 22 6 -1.6485 -2.1872 -6.9256 23 6 -1.6608 -3.5708 -6.8361 24 6 -2.8197 -4.2702 -7.1142 25 6 -3.9675 -3.5922 -7.4811 26 6 -3.9595 -2.2127 -7.5716 27 6 -2.8023 -1.5073 -7.2944 28 9 -2.7943 -0.1592 -7.3822 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 0.7092 1.1612 3.4844 33 1 3.9191 0.2044 -1.2302 34 1 3.8069 -1.2915 -0.2722 35 1 3.8163 -1.3720 -2.0502 36 1 2.0517 0.9347 -2.5281 37 1 0.4721 0.1326 -2.3563 38 1 -0.2375 0.6663 -4.9816 39 1 1.1565 1.4979 -4.2513 40 1 1.1055 1.2220 -6.0090 41 1 2.7124 -1.9061 -5.8163 42 1 1.9786 -0.6884 -6.8873 43 1 0.4182 -2.8310 -5.3764 44 1 0.8971 -2.9474 -7.0867 45 1 -0.7652 -4.1017 -6.5489 46 1 -2.8303 -5.3476 -7.0401 47 1 -4.8717 -4.1415 -7.6983 48 1 -4.8575 -1.6854 -7.8581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161724988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:28 Heat of formation + Delta-G solvation = -87.790591 kcal Electronic energy + Delta-G solvation = -29695.660305 eV Core-core repulsion = 25472.742335 eV Total energy + Delta-G solvation = -4222.917971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.80743 -41.33911 -40.74638 -38.67288 -38.16337 -36.51939 -34.76151 -32.34922 -31.66144 -31.16802 -30.42967 -29.30362 -27.50482 -26.86689 -25.55749 -24.63723 -23.46562 -22.97768 -21.50767 -20.09298 -19.52998 -18.53937 -18.20536 -17.82483 -17.71407 -17.60139 -17.00778 -16.79480 -16.57544 -16.05668 -15.89641 -15.71681 -15.37140 -15.29292 -15.06977 -14.87473 -14.34088 -14.21023 -13.90087 -13.82806 -13.52907 -13.48275 -13.31164 -13.14376 -12.95281 -12.85634 -12.78357 -12.61684 -12.55141 -12.49055 -12.13692 -12.09324 -11.97806 -11.94769 -11.90251 -10.95913 -10.65292 -10.51310 -9.94851 -9.72834 -9.21508 -8.94760 -8.12731 -6.23624 0.12474 0.27123 1.41429 1.42663 1.53697 1.58317 1.88257 2.09512 2.42691 2.60594 3.15399 3.23966 3.35568 3.63715 3.69558 3.85390 4.00648 4.05341 4.15813 4.22570 4.28003 4.32048 4.32544 4.40720 4.41883 4.57668 4.63052 4.67883 4.68614 4.74480 4.88966 4.94275 4.97621 4.98798 5.08648 5.10133 5.23890 5.25459 5.42863 5.45702 5.52579 5.69047 5.70966 5.73717 6.20255 6.24977 6.30302 6.34979 6.67429 6.89067 7.20217 7.45089 8.93543 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014719 B = 0.002488 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.877524 B =11249.968628 C =11815.814363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.218 3.782 3 H -0.028 1.028 4 C -0.522 4.522 5 H 0.055 0.945 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.959 3.041 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.272 1.272 12 N -0.536 5.536 13 C 0.043 3.957 14 C 0.034 3.966 15 C 0.519 3.481 16 O -0.556 6.556 17 N -0.613 5.613 18 C 0.081 3.919 19 C 0.119 3.881 20 C 0.045 3.955 21 O -0.317 6.317 22 C 0.080 3.920 23 C -0.193 4.193 24 C -0.088 4.088 25 C -0.128 4.128 26 C -0.118 4.118 27 C 0.034 3.966 28 F -0.148 7.148 29 H 0.065 0.935 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.008 0.992 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.049 0.951 44 H 0.099 0.901 45 H 0.145 0.855 46 H 0.159 0.841 47 H 0.165 0.835 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.980 -5.388 -25.594 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 H -0.011 1.011 4 C -0.560 4.560 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.308 3.692 16 O -0.433 6.433 17 N -0.348 5.348 18 C -0.061 4.061 19 C -0.003 4.003 20 C -0.031 4.031 21 O -0.231 6.231 22 C 0.034 3.966 23 C -0.211 4.211 24 C -0.106 4.106 25 C -0.146 4.146 26 C -0.137 4.137 27 C 0.014 3.986 28 F -0.127 7.127 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.068 0.932 44 H 0.117 0.883 45 H 0.163 0.837 46 H 0.176 0.824 47 H 0.183 0.817 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.905 -6.035 -25.375 26.982 hybrid contribution 0.625 0.792 1.176 1.549 sum -6.279 -5.242 -24.200 25.545 Atomic orbital electron populations 1.21690 0.97111 0.99126 1.00100 1.19093 0.92738 0.90413 0.86611 1.01061 1.21392 1.31255 1.12312 0.91024 0.92697 1.25664 0.95310 0.95785 1.01716 1.69994 1.37583 1.24045 1.24148 0.85537 0.78125 0.78940 0.78916 1.20045 1.20580 1.19723 1.61760 1.10839 1.52322 1.01188 1.22233 0.87451 0.98586 1.02227 1.22077 1.02844 0.95314 0.89427 1.20748 0.77545 0.86411 0.84506 1.90607 1.42896 1.24237 1.85605 1.47894 1.59617 1.21706 1.05533 1.21938 0.97073 0.83074 1.04037 1.21686 0.95756 0.94290 0.88594 1.23427 0.84189 0.95132 1.00341 1.86097 1.17881 1.36325 1.82769 1.19305 0.86573 0.91947 0.98825 1.21458 1.01904 0.91463 1.06297 1.21455 0.91453 1.01823 0.95833 1.21351 0.99979 0.92768 1.00523 1.21361 0.96376 0.95713 1.00249 1.17431 0.94302 0.77044 1.09775 1.91453 1.97148 1.29555 1.94530 0.91651 0.94664 0.95485 0.92801 0.97328 0.92375 0.91035 0.91754 0.87808 0.92915 0.90623 0.88608 0.87747 0.86717 0.93241 0.88321 0.83711 0.82376 0.81747 0.82280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.08 8.76 71.98 0.63 -5.45 16 2 C 0.22 11.41 2.06 44.17 0.09 11.50 16 3 H -0.03 -1.59 8.14 -2.38 -0.02 -1.61 16 4 C -0.52 -29.69 7.88 25.60 0.20 -29.49 16 5 H 0.05 3.17 6.41 -2.91 -0.02 3.16 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.80 16 8 Si 0.96 44.60 29.54 68.60 2.03 46.63 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.54 -24.81 4.36 -906.06 -3.95 -28.76 16 13 C 0.04 1.90 8.93 127.69 1.14 3.04 16 14 C 0.03 1.27 3.82 85.56 0.33 1.60 16 15 C 0.52 17.57 7.40 87.66 0.65 18.22 16 16 O -0.56 -22.24 13.89 -3.05 -0.04 -22.28 16 17 N -0.61 -15.35 2.84 -846.74 -2.40 -17.75 16 18 C 0.08 1.63 9.89 127.77 1.26 2.89 16 19 C 0.12 2.31 5.86 86.38 0.51 2.82 16 20 C 0.04 0.88 5.08 71.98 0.37 1.25 16 21 O -0.32 -7.33 9.56 -93.06 -0.89 -8.22 16 22 C 0.08 1.78 6.69 22.53 0.15 1.93 16 23 C -0.19 -3.43 9.04 22.36 0.20 -3.23 16 24 C -0.09 -1.17 10.04 22.26 0.22 -0.95 16 25 C -0.13 -1.57 10.04 22.28 0.22 -1.35 16 26 C -0.12 -1.88 10.02 22.29 0.22 -1.66 16 27 C 0.03 0.76 7.31 22.45 0.16 0.92 16 28 F -0.15 -3.76 17.11 44.97 0.77 -2.99 16 29 H 0.06 3.55 6.07 -2.39 -0.01 3.53 16 30 H 0.03 1.50 6.20 -2.39 -0.01 1.48 16 31 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 2.73 6.10 -2.39 -0.01 2.72 16 35 H 0.07 3.00 5.88 -2.39 -0.01 2.98 16 36 H 0.06 2.19 7.38 -2.38 -0.02 2.17 16 37 H 0.10 3.75 5.79 -2.39 -0.01 3.74 16 38 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 1.48 6.44 -2.39 -0.02 1.46 16 40 H 0.10 1.43 7.89 -2.39 -0.02 1.41 16 41 H 0.10 2.11 7.42 -2.39 -0.02 2.09 16 42 H 0.11 1.58 7.89 -2.38 -0.02 1.56 16 43 H 0.05 1.21 7.66 -2.39 -0.02 1.19 16 44 H 0.10 1.37 7.66 -2.39 -0.02 1.35 16 45 H 0.15 2.24 6.30 -2.91 -0.02 2.22 16 46 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 47 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 48 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -72.18 388.22 3.53 -68.65 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.97 Total: 14.24 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.81 Total: 3.29 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -6.11 Total: -99.31 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.93 Total: -30.51 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.18 3.53 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161724988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.143 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds