Wall clock time and date at job start Tue Mar 31 2020 20:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31516 * 120.00014 * 198.29137 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.50699 * 109.46951 * 189.99667 * 14 12 2 16 16 O 1.21280 * 120.00140 * 0.02562 * 15 14 12 17 17 N 1.34780 * 120.00125 * 179.97438 * 15 14 12 18 18 C 1.46493 * 119.99835 * 359.97438 * 17 15 14 19 19 C 1.46499 * 120.00126 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.47220 * 89.99688 * 19 17 15 21 21 O 1.42902 * 109.46849 * 65.00270 * 20 19 17 22 22 C 1.35953 * 116.99574 * 180.02562 * 21 20 19 23 23 C 1.38655 * 120.06608 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.97006 * 179.97438 * 23 22 21 25 25 C 1.38256 * 120.09755 * 0.02562 * 24 23 22 26 26 C 1.38253 * 120.12585 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.03072 * 359.69987 * 26 25 24 28 28 F 1.35092 * 120.05060 * 180.27867 * 27 26 25 29 29 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 30 30 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 31 31 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 32 32 H 0.97002 * 119.99810 * 355.24611 * 7 6 4 33 33 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 34 34 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 35 35 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 36 36 H 1.08997 * 109.46906 * 309.99690 * 14 12 2 37 37 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 38 38 H 1.08999 * 109.47134 * 90.00087 * 18 17 15 39 39 H 1.08996 * 109.47706 * 210.00209 * 18 17 15 40 40 H 1.08996 * 109.47752 * 330.00561 * 18 17 15 41 41 H 1.09000 * 109.46772 * 209.99780 * 19 17 15 42 42 H 1.08998 * 109.47070 * 330.00050 * 19 17 15 43 43 H 1.09002 * 109.47021 * 185.00029 * 20 19 17 44 44 H 1.09001 * 109.47028 * 305.00106 * 20 19 17 45 45 H 1.07999 * 120.01574 * 359.95253 * 23 22 21 46 46 H 1.08004 * 119.95279 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.93920 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98941 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9005 -0.9341 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5569 3.6006 16 8 3.1161 -1.4983 3.4436 17 7 2.1801 -0.0433 4.8325 18 6 1.2775 1.0948 5.0218 19 6 2.8797 -0.6226 5.9819 20 6 4.2233 0.0846 6.1707 21 8 3.9970 1.4527 6.5160 22 6 5.0954 2.2276 6.7196 23 6 6.3637 1.6825 6.5903 24 6 7.4788 2.4721 6.7972 25 6 7.3317 3.8050 7.1336 26 6 6.0689 4.3523 7.2646 27 6 4.9491 3.5682 7.0531 28 9 3.7151 4.1040 7.1756 29 1 -0.3633 0.5994 -0.8348 30 1 -0.3633 -1.0226 -0.1017 31 1 -0.3634 0.4232 0.9364 32 1 2.2094 -1.8499 -3.4665 33 1 1.8763 -2.6150 0.3649 34 1 1.9060 -2.5657 2.1437 35 1 0.4384 -2.0742 1.2640 36 1 1.9296 1.0871 2.3124 37 1 0.5721 -0.0344 2.5726 38 1 0.2694 0.7302 5.2191 39 1 1.6192 1.6930 5.8665 40 1 1.2721 1.7082 4.1208 41 1 2.2729 -0.4952 6.8784 42 1 3.0498 -1.6848 5.8062 43 1 4.7821 -0.4040 6.9689 44 1 4.7942 0.0335 5.2435 45 1 6.4802 0.6413 6.3283 46 1 8.4666 2.0473 6.6959 47 1 8.2050 4.4197 7.2951 48 1 5.9567 5.3937 7.5279 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161725059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:34 Heat of formation + Delta-G solvation = -67.015977 kcal Electronic energy + Delta-G solvation = -29734.942529 eV Core-core repulsion = 25512.925413 eV Total energy + Delta-G solvation = -4222.017116 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.01538 -40.46758 -39.73662 -37.86811 -36.93358 -35.41673 -32.67946 -31.49587 -31.03440 -29.92823 -29.38760 -27.58519 -26.52500 -24.97911 -24.61414 -23.41680 -22.80146 -22.06805 -19.53470 -18.90887 -18.66913 -17.47986 -17.26478 -16.94450 -16.83973 -16.70871 -15.93266 -15.69508 -15.35616 -15.07003 -14.79264 -14.69765 -14.35317 -13.95464 -13.70732 -13.52456 -13.16691 -13.05708 -12.77395 -12.69157 -12.63575 -12.43713 -12.34118 -12.17523 -11.92583 -11.77399 -11.48343 -11.38843 -11.34997 -11.24874 -10.85425 -10.75175 -10.37830 -9.86088 -9.73064 -9.39418 -9.30775 -8.90347 -8.71158 -8.52347 -8.12009 -7.29522 -6.42422 -3.99148 0.76681 0.91454 2.67521 2.84636 2.98994 3.23188 3.36904 3.44984 3.61085 3.91401 4.33952 4.45876 4.51012 4.57093 4.70278 4.78328 4.86061 4.87275 4.90534 5.01351 5.08748 5.14819 5.30732 5.36210 5.40669 5.50858 5.60273 5.63811 5.67491 5.70033 5.77172 5.83087 6.02548 6.17391 6.28838 6.30584 6.36787 6.39858 6.46795 6.65389 6.83099 6.96524 7.01342 7.27790 7.35324 7.71293 8.05939 8.29432 8.42103 8.49768 9.03191 9.67648 10.99013 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.002659 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.428554 B =10529.725424 C =11244.576751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.187 3.813 3 H 0.031 0.969 4 C -0.585 4.585 5 H 0.065 0.935 6 C 0.029 3.971 7 N -0.908 5.908 8 Si 1.044 2.956 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.283 1.283 12 N -0.509 5.509 13 C 0.034 3.966 14 C 0.034 3.966 15 C 0.516 3.484 16 O -0.518 6.518 17 N -0.623 5.623 18 C 0.081 3.919 19 C 0.123 3.877 20 C 0.040 3.960 21 O -0.303 6.303 22 C 0.103 3.897 23 C -0.183 4.183 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.117 4.117 27 C 0.065 3.935 28 F -0.133 7.133 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.267 0.733 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.011 0.989 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 8.147 26.637 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.080 3.920 3 H 0.048 0.952 4 C -0.623 4.623 5 H 0.083 0.917 6 C -0.175 4.175 7 N -0.542 5.542 8 Si 0.873 3.127 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.232 5.232 13 C -0.114 4.114 14 C -0.097 4.097 15 C 0.305 3.695 16 O -0.392 6.392 17 N -0.359 5.359 18 C -0.062 4.062 19 C -0.001 4.001 20 C -0.036 4.036 21 O -0.217 6.217 22 C 0.056 3.944 23 C -0.201 4.201 24 C -0.107 4.107 25 C -0.151 4.151 26 C -0.136 4.136 27 C 0.045 3.955 28 F -0.112 7.112 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.595 8.816 25.388 27.451 hybrid contribution -0.496 -1.053 1.184 1.660 sum 5.099 7.763 26.572 28.148 Atomic orbital electron populations 1.22898 1.01353 1.01356 0.99107 1.19689 0.89164 0.94655 0.88531 0.95173 1.21944 1.39847 1.10363 0.90174 0.91677 1.25676 0.94809 1.04994 0.92063 1.70859 1.42375 1.09460 1.31515 0.84070 0.76894 0.75708 0.76018 1.21152 1.20258 1.20917 1.62018 1.59268 1.02126 0.99783 1.22349 0.96074 0.90366 1.02655 1.22028 0.97491 0.99458 0.90766 1.21040 0.81846 0.83090 0.83522 1.90645 1.36702 1.27580 1.84306 1.47901 1.46716 1.34268 1.06979 1.21816 0.92765 0.88266 1.03398 1.21438 0.91096 0.98185 0.89349 1.23485 0.99970 0.79288 1.00824 1.86124 1.29201 1.22510 1.83853 1.19039 0.87357 0.89983 0.97990 1.21243 0.91063 1.01620 1.06203 1.21054 0.98592 0.93714 0.97298 1.20937 0.96662 0.95507 1.02003 1.21037 0.91105 1.00337 1.01145 1.17009 0.80866 0.89415 1.08186 1.91499 1.39843 1.85955 1.93878 0.92244 0.93038 0.96017 0.92246 0.90721 0.92012 0.97048 0.88706 0.92660 0.92831 0.90389 0.90915 0.89570 0.87551 0.90967 0.90861 0.84428 0.85007 0.84867 0.84135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 8.12 37.15 0.30 -3.81 16 2 C 0.19 4.51 1.93 -68.87 -0.13 4.38 16 3 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 4 C -0.59 -16.63 8.31 -34.44 -0.29 -16.91 16 5 H 0.07 2.03 6.78 -52.49 -0.36 1.67 16 6 C 0.03 0.85 5.34 -17.82 -0.10 0.76 16 7 N -0.91 -28.04 13.70 55.43 0.76 -27.28 16 8 Si 1.04 25.15 26.46 -169.99 -4.50 20.65 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.07 5.53 56.52 0.31 -5.75 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.51 -11.28 4.48 -237.74 -1.06 -12.35 16 13 C 0.03 0.72 8.53 60.07 0.51 1.23 16 14 C 0.03 0.60 3.45 -4.98 -0.02 0.58 16 15 C 0.52 8.52 7.37 -10.98 -0.08 8.44 16 16 O -0.52 -10.19 13.91 5.56 0.08 -10.11 16 17 N -0.62 -7.76 2.84 -181.58 -0.52 -8.28 16 18 C 0.08 0.81 10.06 59.84 0.60 1.41 16 19 C 0.12 1.23 5.81 -4.04 -0.02 1.21 16 20 C 0.04 0.40 5.08 37.16 0.19 0.59 16 21 O -0.30 -3.42 8.82 -19.59 -0.17 -3.60 16 22 C 0.10 1.13 6.69 -39.18 -0.26 0.86 16 23 C -0.18 -1.67 9.04 -39.45 -0.36 -2.03 16 24 C -0.09 -0.67 10.04 -39.60 -0.40 -1.07 16 25 C -0.13 -0.95 10.04 -39.57 -0.40 -1.35 16 26 C -0.12 -0.98 10.02 -39.54 -0.40 -1.38 16 27 C 0.07 0.70 7.31 -39.29 -0.29 0.42 16 28 F -0.13 -1.60 17.11 2.25 0.04 -1.56 16 29 H 0.06 1.33 4.88 -51.93 -0.25 1.08 16 30 H 0.05 1.15 6.71 -51.93 -0.35 0.80 16 31 H 0.02 0.40 6.49 -51.93 -0.34 0.06 16 32 H 0.27 8.27 8.73 -40.82 -0.36 7.91 16 33 H 0.07 1.77 6.43 -51.93 -0.33 1.44 16 34 H 0.06 1.27 5.83 -51.92 -0.30 0.97 16 35 H 0.01 0.23 6.41 -51.93 -0.33 -0.11 16 36 H 0.09 1.56 7.26 -51.93 -0.38 1.18 16 37 H 0.06 0.89 6.78 -51.93 -0.35 0.54 16 38 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.75 7.11 -51.93 -0.37 0.38 16 40 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 41 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 42 H 0.11 1.11 7.42 -51.93 -0.39 0.72 16 43 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16 44 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 45 H 0.14 1.09 6.30 -52.49 -0.33 0.76 16 46 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 48 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -34.22 380.15 -7.68 -41.90 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.91 Total: 1.56 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.13 Total: -6.67 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.82 Total: -47.91 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.10 Total: -13.71 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -4.50 Total: 20.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.22 -7.68 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161725059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.118 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds