Wall clock time and date at job start Tue Mar 31 2020 20:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.46950 * 2 1 4 4 C 1.50695 * 109.47518 * 239.99752 * 2 1 3 5 5 H 1.07997 * 120.00446 * 245.58664 * 4 2 1 6 6 C 1.37883 * 119.99801 * 65.57983 * 4 2 1 7 7 N 1.31516 * 120.00014 * 198.29137 * 6 4 2 8 8 Si 1.86803 * 120.00001 * 18.57489 * 6 4 2 9 9 H 1.48502 * 109.46996 * 179.72365 * 8 6 4 10 10 H 1.48498 * 109.46761 * 299.71964 * 8 6 4 11 11 H 1.48496 * 109.47235 * 59.72150 * 8 6 4 12 12 N 1.46900 * 109.47259 * 119.99389 * 2 1 3 13 13 C 1.46903 * 110.99472 * 58.95482 * 12 2 1 14 14 C 1.46897 * 111.00093 * 295.00639 * 12 2 1 15 15 C 1.50699 * 109.46951 * 189.99667 * 14 12 2 16 16 O 1.21280 * 120.00140 * 0.02562 * 15 14 12 17 17 N 1.34780 * 120.00125 * 179.97438 * 15 14 12 18 18 C 1.46493 * 119.99835 * 359.97438 * 17 15 14 19 19 C 1.46499 * 120.00126 * 180.02562 * 17 15 14 20 20 C 1.53004 * 109.47220 * 89.99688 * 19 17 15 21 21 O 1.42902 * 109.46849 * 65.00270 * 20 19 17 22 22 C 1.35953 * 116.99574 * 180.02562 * 21 20 19 23 23 C 1.38655 * 120.06608 * 359.97438 * 22 21 20 24 24 C 1.38182 * 119.97006 * 179.97438 * 23 22 21 25 25 C 1.38256 * 120.09755 * 0.02562 * 24 23 22 26 26 C 1.38253 * 120.12585 * 0.02562 * 25 24 23 27 27 C 1.38338 * 120.03072 * 359.69987 * 26 25 24 28 28 F 1.35092 * 120.05060 * 180.27867 * 27 26 25 29 29 H 1.09005 * 109.47053 * 54.32166 * 1 2 3 30 30 H 1.08997 * 109.47167 * 174.31792 * 1 2 3 31 31 H 1.09000 * 109.47599 * 294.31912 * 1 2 3 32 32 H 0.97002 * 119.99810 * 355.24611 * 7 6 4 33 33 H 1.08998 * 109.47081 * 60.00563 * 13 12 2 34 34 H 1.09008 * 109.46951 * 179.97438 * 13 12 2 35 35 H 1.08997 * 109.47794 * 299.99940 * 13 12 2 36 36 H 1.08997 * 109.46906 * 309.99690 * 14 12 2 37 37 H 1.08997 * 109.47330 * 69.99922 * 14 12 2 38 38 H 1.08999 * 109.47134 * 90.00087 * 18 17 15 39 39 H 1.08996 * 109.47706 * 210.00209 * 18 17 15 40 40 H 1.08996 * 109.47752 * 330.00561 * 18 17 15 41 41 H 1.09000 * 109.46772 * 209.99780 * 19 17 15 42 42 H 1.08998 * 109.47070 * 330.00050 * 19 17 15 43 43 H 1.09002 * 109.47021 * 185.00029 * 20 19 17 44 44 H 1.09001 * 109.47028 * 305.00106 * 20 19 17 45 45 H 1.07999 * 120.01574 * 359.95253 * 23 22 21 46 46 H 1.08004 * 119.95279 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.93920 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.98941 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5769 -1.6381 -1.1338 6 6 1.7968 -0.1761 -2.4794 7 7 1.9005 -0.9341 -3.5491 8 14 1.3379 1.6264 -2.6529 9 1 1.1452 1.9521 -4.0889 10 1 0.0782 1.8899 -1.9122 11 1 2.4256 2.4699 -2.0956 12 7 2.0196 -0.6924 1.1995 13 6 1.5283 -2.0760 1.2461 14 6 1.6486 0.0393 2.4180 15 6 2.3678 -0.5569 3.6006 16 8 3.1161 -1.4983 3.4436 17 7 2.1801 -0.0433 4.8325 18 6 1.2775 1.0948 5.0218 19 6 2.8797 -0.6226 5.9819 20 6 4.2233 0.0846 6.1707 21 8 3.9970 1.4527 6.5160 22 6 5.0954 2.2276 6.7196 23 6 6.3637 1.6825 6.5903 24 6 7.4788 2.4721 6.7972 25 6 7.3317 3.8050 7.1336 26 6 6.0689 4.3523 7.2646 27 6 4.9491 3.5682 7.0531 28 9 3.7151 4.1040 7.1756 29 1 -0.3633 0.5994 -0.8348 30 1 -0.3633 -1.0226 -0.1017 31 1 -0.3634 0.4232 0.9364 32 1 2.2094 -1.8499 -3.4665 33 1 1.8763 -2.6150 0.3649 34 1 1.9060 -2.5657 2.1437 35 1 0.4384 -2.0742 1.2640 36 1 1.9296 1.0871 2.3124 37 1 0.5721 -0.0344 2.5726 38 1 0.2694 0.7302 5.2191 39 1 1.6192 1.6930 5.8665 40 1 1.2721 1.7082 4.1208 41 1 2.2729 -0.4952 6.8784 42 1 3.0498 -1.6848 5.8062 43 1 4.7821 -0.4040 6.9689 44 1 4.7942 0.0335 5.2435 45 1 6.4802 0.6413 6.3283 46 1 8.4666 2.0473 6.6959 47 1 8.2050 4.4197 7.2951 48 1 5.9567 5.3937 7.5279 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161725059.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:32 Heat of formation + Delta-G solvation = -90.373995 kcal Electronic energy + Delta-G solvation = -29735.955409 eV Core-core repulsion = 25512.925413 eV Total energy + Delta-G solvation = -4223.029996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.81751 -41.37862 -40.78739 -38.84290 -38.32771 -36.54343 -34.77080 -32.47118 -31.68128 -31.42846 -30.36345 -29.00438 -27.44747 -26.90962 -25.98095 -24.63877 -23.47608 -22.94213 -21.22522 -20.08861 -19.56111 -19.37243 -18.33012 -17.87641 -17.74099 -17.62343 -16.87374 -16.85341 -16.52158 -16.12119 -15.90104 -15.62834 -15.49181 -15.36394 -15.06661 -14.87676 -14.41743 -14.15012 -13.95745 -13.83518 -13.80354 -13.55846 -13.36383 -13.27028 -13.20544 -13.07519 -12.87410 -12.62168 -12.51290 -12.45494 -12.16434 -12.10185 -11.97931 -11.75563 -11.56666 -11.02294 -10.73569 -10.31328 -9.95934 -9.73288 -9.22990 -8.98101 -8.72953 -6.30652 0.11390 0.25857 1.45703 1.56315 1.57083 1.73601 1.86742 2.06442 2.51417 2.59427 3.09858 3.22396 3.25643 3.61387 3.67899 3.83899 3.97937 4.04256 4.13895 4.21410 4.25223 4.28732 4.31317 4.36881 4.39680 4.44243 4.56119 4.59921 4.63131 4.66511 4.72144 4.78135 4.82384 4.94181 4.97249 5.06072 5.09387 5.19134 5.24453 5.42042 5.49661 5.50135 5.67803 5.77472 6.06629 6.20084 6.24134 6.28169 6.53388 6.73715 7.18766 7.46892 8.66798 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.002659 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.428554 B =10529.725424 C =11244.576751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.188 3.812 3 H 0.038 0.962 4 C -0.588 4.588 5 H 0.018 0.982 6 C -0.023 4.023 7 N -0.941 5.941 8 Si 1.085 2.915 9 H -0.291 1.291 10 H -0.235 1.235 11 H -0.266 1.266 12 N -0.535 5.535 13 C 0.048 3.952 14 C 0.034 3.966 15 C 0.515 3.485 16 O -0.561 6.561 17 N -0.613 5.613 18 C 0.076 3.924 19 C 0.119 3.881 20 C 0.046 3.954 21 O -0.316 6.316 22 C 0.080 3.920 23 C -0.193 4.193 24 C -0.089 4.089 25 C -0.128 4.128 26 C -0.118 4.118 27 C 0.036 3.964 28 F -0.147 7.147 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.062 0.938 32 H 0.249 0.751 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.049 0.951 45 H 0.144 0.856 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.963 10.864 29.361 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.080 3.920 3 H 0.056 0.944 4 C -0.627 4.627 5 H 0.036 0.964 6 C -0.220 4.220 7 N -0.577 5.577 8 Si 0.906 3.094 9 H -0.217 1.217 10 H -0.159 1.159 11 H -0.191 1.191 12 N -0.258 5.258 13 C -0.100 4.100 14 C -0.097 4.097 15 C 0.304 3.696 16 O -0.439 6.439 17 N -0.347 5.347 18 C -0.066 4.066 19 C -0.003 4.003 20 C -0.030 4.030 21 O -0.230 6.230 22 C 0.034 3.966 23 C -0.212 4.212 24 C -0.107 4.107 25 C -0.146 4.146 26 C -0.136 4.136 27 C 0.016 3.984 28 F -0.126 7.126 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.127 0.873 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.120 0.880 43 H 0.115 0.885 44 H 0.067 0.933 45 H 0.161 0.839 46 H 0.175 0.825 47 H 0.182 0.818 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.165 11.543 28.186 30.893 hybrid contribution -0.236 -1.936 0.462 2.004 sum 4.930 9.607 28.648 30.615 Atomic orbital electron populations 1.22721 0.99111 1.00885 1.01147 1.19534 0.90693 0.94210 0.87537 0.94440 1.22137 1.38872 1.08856 0.92792 0.96402 1.27222 0.94374 1.08776 0.91658 1.71002 1.45055 1.08906 1.32758 0.83604 0.79027 0.70420 0.76394 1.21734 1.15942 1.19127 1.61801 1.60395 1.02450 1.01169 1.22136 0.96575 0.90239 1.01055 1.22093 0.99016 0.99492 0.89069 1.20870 0.81454 0.82765 0.84528 1.90632 1.38628 1.29561 1.85077 1.47904 1.46345 1.34170 1.06266 1.22009 0.93298 0.87512 1.03750 1.21641 0.91573 0.97810 0.89279 1.23416 0.99723 0.79290 1.00594 1.86077 1.29827 1.22900 1.84187 1.19285 0.87864 0.90241 0.99219 1.21447 0.91046 1.02271 1.06414 1.21446 0.99236 0.93938 0.96032 1.21349 0.97201 0.95639 1.00411 1.21367 0.90856 1.01147 1.00274 1.17399 0.81100 0.89930 1.09929 1.91451 1.40777 1.86136 1.94196 0.92515 0.94400 0.91938 0.94227 0.94551 0.91320 0.95787 0.87317 0.90293 0.90610 0.89794 0.90805 0.86756 0.88041 0.88486 0.93279 0.83860 0.82519 0.81791 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.37 8.12 71.98 0.58 -6.79 16 2 C 0.19 8.88 1.93 44.17 0.09 8.97 16 3 H 0.04 1.74 6.67 -2.39 -0.02 1.72 16 4 C -0.59 -34.41 8.31 25.60 0.21 -34.20 16 5 H 0.02 1.18 6.78 -2.91 -0.02 1.16 16 6 C -0.02 -1.36 5.34 84.66 0.45 -0.90 16 7 N -0.94 -60.30 13.70 21.45 0.29 -60.01 16 8 Si 1.08 49.54 26.46 68.60 1.82 51.35 16 9 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 10 H -0.24 -9.19 5.53 99.48 0.55 -8.64 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 N -0.53 -23.48 4.48 -906.07 -4.06 -27.54 16 13 C 0.05 2.10 8.53 127.69 1.09 3.19 16 14 C 0.03 1.12 3.45 85.56 0.30 1.41 16 15 C 0.52 16.37 7.37 87.66 0.65 17.01 16 16 O -0.56 -22.15 13.91 -3.03 -0.04 -22.19 16 17 N -0.61 -14.07 2.84 -846.78 -2.40 -16.48 16 18 C 0.08 1.31 10.06 127.77 1.29 2.59 16 19 C 0.12 2.20 5.81 86.38 0.50 2.70 16 20 C 0.05 0.85 5.08 71.98 0.37 1.22 16 21 O -0.32 -6.83 8.82 -93.02 -0.82 -7.65 16 22 C 0.08 1.69 6.69 22.53 0.15 1.84 16 23 C -0.19 -3.30 9.04 22.36 0.20 -3.10 16 24 C -0.09 -1.14 10.04 22.26 0.22 -0.91 16 25 C -0.13 -1.47 10.04 22.28 0.22 -1.25 16 26 C -0.12 -1.74 10.02 22.30 0.22 -1.52 16 27 C 0.04 0.75 7.31 22.46 0.16 0.92 16 28 F -0.15 -3.46 17.11 44.97 0.77 -2.69 16 29 H 0.06 2.34 4.88 -2.38 -0.01 2.33 16 30 H 0.04 1.63 6.71 -2.39 -0.02 1.61 16 31 H 0.06 2.04 6.49 -2.39 -0.02 2.03 16 32 H 0.25 16.35 8.73 -92.71 -0.81 15.54 16 33 H 0.04 1.82 6.43 -2.39 -0.02 1.80 16 34 H 0.07 2.89 5.83 -2.38 -0.01 2.87 16 35 H 0.02 0.96 6.41 -2.39 -0.02 0.95 16 36 H 0.11 3.25 7.26 -2.39 -0.02 3.23 16 37 H 0.08 2.22 6.78 -2.39 -0.02 2.21 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.39 7.11 -2.39 -0.02 1.37 16 40 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 41 H 0.11 1.48 8.07 -2.39 -0.02 1.46 16 42 H 0.10 2.01 7.42 -2.39 -0.02 2.00 16 43 H 0.10 1.30 7.66 -2.39 -0.02 1.28 16 44 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 45 H 0.14 2.16 6.30 -2.91 -0.02 2.14 16 46 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 47 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 48 H 0.16 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -78.56 380.15 3.04 -75.52 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.78 Total: 18.50 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 6.71 Total: -8.81 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -6.17 Total: -104.02 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.86 Total: -29.85 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.77 Total: -2.69 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 1.82 Total: 51.35 kcal Total: -78.56 3.04 -75.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161725059.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.854 kcal (2) G-P(sol) polarization free energy of solvation -78.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds