Wall clock time and date at job start Tue Mar 31 2020 20:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 O 1.21273 * 119.99976 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99846 * 180.02562 * 15 14 12 18 18 C 1.46500 * 119.99729 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46887 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47036 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47222 * 180.02562 * 20 19 18 22 22 C 1.35956 * 116.99894 * 180.02562 * 21 20 19 23 23 C 1.38659 * 120.06740 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.97316 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.09241 * 0.02562 * 24 23 22 26 26 C 1.38261 * 120.13142 * 0.02562 * 25 24 23 27 27 C 1.38340 * 120.02530 * 359.70598 * 26 25 24 28 28 F 1.35100 * 120.04698 * 180.27772 * 27 26 25 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 34 34 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 35 35 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 36 36 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 37 37 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 38 38 H 0.96999 * 119.99932 * 359.97438 * 17 15 14 39 39 H 1.08990 * 109.47120 * 299.99491 * 18 17 15 40 40 H 1.09003 * 109.47163 * 60.00075 * 18 17 15 41 41 H 1.09001 * 109.46708 * 299.99898 * 19 18 17 42 42 H 1.08994 * 109.47017 * 60.00072 * 19 18 17 43 43 H 1.09007 * 109.47170 * 299.99932 * 20 19 18 44 44 H 1.09000 * 109.47305 * 59.99602 * 20 19 18 45 45 H 1.08005 * 120.01196 * 359.95384 * 23 22 21 46 46 H 1.07995 * 119.95540 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.93674 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.98748 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 8 3.1155 -1.4988 3.4437 17 7 2.1795 -0.0439 4.8326 18 6 2.8783 -0.6239 5.9822 19 6 2.4919 0.1383 7.2514 20 6 3.2222 -0.4669 8.4519 21 8 2.8609 0.2446 9.6374 22 6 3.4269 -0.1693 10.8022 23 6 4.3106 -1.2378 10.8041 24 6 4.8851 -1.6565 11.9890 25 6 4.5795 -1.0118 13.1733 26 6 3.6981 0.0533 13.1763 27 6 3.1242 0.4803 11.9922 28 9 2.2672 1.5247 11.9938 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1611 -3.4845 33 1 1.8764 -2.6150 0.3648 34 1 1.9053 -2.5654 2.1441 35 1 0.4385 -2.0742 1.2640 36 1 1.9297 1.0872 2.3124 37 1 0.5722 -0.0344 2.5726 38 1 1.5812 0.7092 4.9581 39 1 2.5972 -1.6716 6.0875 40 1 3.9548 -0.5501 5.8281 41 1 2.7734 1.1861 7.1458 42 1 1.4155 0.0650 7.4057 43 1 2.9412 -1.5148 8.5576 44 1 4.2986 -0.3933 8.2973 45 1 4.5496 -1.7428 9.8797 46 1 5.5736 -2.4885 11.9900 47 1 5.0297 -1.3415 14.0981 48 1 3.4607 0.5549 14.1028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161935356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:44 Heat of formation + Delta-G solvation = -83.459626 kcal Electronic energy + Delta-G solvation = -27833.595260 eV Core-core repulsion = 23610.865094 eV Total energy + Delta-G solvation = -4222.730166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.15391 -40.51256 -39.55975 -38.06712 -36.81976 -35.40501 -32.69186 -32.42047 -31.20197 -30.19399 -29.12074 -27.68711 -26.02991 -25.15347 -24.00474 -23.21120 -22.80093 -21.81630 -20.38690 -19.18767 -18.89422 -17.57256 -17.07940 -16.99618 -16.80275 -16.07123 -15.95796 -15.86297 -15.34844 -15.32878 -14.86908 -14.82976 -14.42368 -14.34638 -14.01757 -13.62632 -13.28088 -13.22474 -12.79479 -12.61209 -12.59328 -12.41956 -12.22219 -11.99484 -11.95053 -11.52921 -11.48819 -11.16705 -11.03461 -10.90198 -10.78164 -10.70797 -10.46739 -10.06230 -9.95790 -9.46719 -9.31757 -9.01825 -8.85431 -8.69634 -8.37106 -7.12272 -5.99946 -4.02819 0.60875 0.74840 2.43714 2.97388 3.07055 3.29214 3.35457 3.38849 3.43348 3.76434 4.18589 4.30219 4.38921 4.43916 4.52672 4.57239 4.65861 4.71856 4.85921 5.01777 5.01959 5.12777 5.18843 5.32266 5.33352 5.44929 5.53893 5.64645 5.66806 5.75333 5.81011 5.86596 5.86985 6.14110 6.33809 6.45853 6.48240 6.69297 6.80471 6.81445 7.01216 7.08765 7.41406 7.60542 7.71845 7.85481 8.10662 8.37765 8.50582 8.61557 9.03128 9.61949 11.07418 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035705 B = 0.001464 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.021572 B =19122.573705 C =19649.137431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.210 3.790 3 H 0.040 0.960 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.289 1.289 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.517 5.517 13 C 0.031 3.969 14 C 0.037 3.963 15 C 0.515 3.485 16 O -0.518 6.518 17 N -0.742 5.742 18 C 0.126 3.874 19 C -0.131 4.131 20 C 0.062 3.938 21 O -0.307 6.307 22 C 0.101 3.899 23 C -0.183 4.183 24 C -0.089 4.089 25 C -0.131 4.131 26 C -0.117 4.117 27 C 0.066 3.934 28 F -0.132 7.132 29 H 0.006 0.994 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.012 0.988 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.140 0.860 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.934 -1.544 31.778 32.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.104 3.896 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.241 5.241 13 C -0.117 4.117 14 C -0.095 4.095 15 C 0.302 3.698 16 O -0.392 6.392 17 N -0.397 5.397 18 C 0.002 3.998 19 C -0.169 4.169 20 C -0.013 4.013 21 O -0.220 6.220 22 C 0.055 3.945 23 C -0.202 4.202 24 C -0.107 4.107 25 C -0.150 4.150 26 C -0.136 4.136 27 C 0.046 3.954 28 F -0.111 7.111 29 H 0.025 0.975 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.234 0.766 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.152 0.848 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.761 -1.953 31.404 31.823 hybrid contribution -0.981 0.072 -0.773 1.251 sum 3.780 -1.880 30.631 30.921 Atomic orbital electron populations 1.22427 1.00828 0.99504 1.00516 1.19378 0.89749 0.94587 0.85866 0.94218 1.21076 1.30534 1.12543 0.89516 0.91836 1.24920 0.95235 0.95155 0.98987 1.69871 1.37105 1.23095 1.23495 0.86553 0.79272 0.79582 0.81954 1.21431 1.20206 1.20370 1.62106 1.59534 1.02075 1.00400 1.22352 0.96235 0.90753 1.02352 1.21923 0.97362 0.99614 0.90636 1.21084 0.81912 0.83281 0.83541 1.90648 1.36438 1.27375 1.84752 1.46011 1.49444 1.37249 1.07014 1.21020 0.97620 0.97313 0.83852 1.21698 1.01963 1.01395 0.91830 1.22757 1.00033 0.96033 0.82511 1.86114 1.65479 1.56828 1.13605 1.19021 0.95055 0.94750 0.85711 1.21256 1.00132 0.98323 1.00471 1.21068 0.98606 0.99337 0.91681 1.20965 0.98917 0.96245 0.98835 1.21062 0.97792 0.98275 0.96453 1.17043 0.96382 0.89686 0.92270 1.91514 1.67729 1.54700 1.97149 0.97493 0.89199 0.94926 0.92981 0.90907 0.92254 0.97003 0.88636 0.92755 0.76644 0.91430 0.91295 0.89820 0.89898 0.91243 0.91181 0.84250 0.84895 0.84777 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.28 37.16 0.31 -3.79 16 2 C 0.21 5.27 2.34 -68.87 -0.16 5.11 16 3 H 0.04 1.08 8.03 -51.92 -0.42 0.66 16 4 C -0.50 -13.77 7.94 -34.44 -0.27 -14.05 16 5 H 0.06 1.79 6.75 -52.49 -0.35 1.43 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.52 -11.49 4.48 -237.73 -1.06 -12.56 16 13 C 0.03 0.67 8.53 60.06 0.51 1.18 16 14 C 0.04 0.64 4.89 -4.98 -0.02 0.61 16 15 C 0.51 8.35 7.52 -10.98 -0.08 8.26 16 16 O -0.52 -10.37 14.33 5.56 0.08 -10.29 16 17 N -0.74 -8.39 5.56 -60.29 -0.33 -8.73 16 18 C 0.13 1.19 5.67 -4.04 -0.02 1.16 16 19 C -0.13 -0.93 5.70 -26.73 -0.15 -1.08 16 20 C 0.06 0.43 4.74 37.16 0.18 0.61 16 21 O -0.31 -2.93 10.00 -19.60 -0.20 -3.12 16 22 C 0.10 0.90 6.69 -39.18 -0.26 0.64 16 23 C -0.18 -1.23 9.04 -39.45 -0.36 -1.58 16 24 C -0.09 -0.48 10.04 -39.60 -0.40 -0.87 16 25 C -0.13 -0.68 10.04 -39.57 -0.40 -1.08 16 26 C -0.12 -0.76 10.02 -39.54 -0.40 -1.16 16 27 C 0.07 0.60 7.31 -39.29 -0.29 0.32 16 28 F -0.13 -1.43 17.11 2.25 0.04 -1.39 16 29 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 30 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 31 H 0.03 0.76 6.38 -51.93 -0.33 0.42 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.07 1.65 6.53 -51.93 -0.34 1.31 16 34 H 0.06 1.22 5.82 -51.93 -0.30 0.92 16 35 H 0.01 0.24 6.28 -51.93 -0.33 -0.09 16 36 H 0.10 1.56 8.00 -51.93 -0.42 1.14 16 37 H 0.05 0.89 6.94 -51.93 -0.36 0.53 16 38 H 0.40 3.43 8.47 -40.82 -0.35 3.08 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.40 7.66 -51.93 -0.40 0.01 16 44 H 0.07 0.41 7.66 -51.93 -0.40 0.01 16 45 H 0.14 0.70 6.30 -52.48 -0.33 0.37 16 46 H 0.13 0.41 8.06 -52.49 -0.42 -0.01 16 47 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 48 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 390.43 15.07 5.88 5.88 Total: -1.00 -33.20 390.43 -8.98 -42.17 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.08 Total: 0.43 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.91 Total: -4.22 kcal Atomic # 7 Polarization: -45.23 SS G_CDS: -0.77 Total: -46.00 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.12 Total: -13.41 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.20 -8.98 -42.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161935356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.286 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds