Wall clock time and date at job start Tue Mar 31 2020 20:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 O 1.21273 * 119.99976 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99846 * 180.02562 * 15 14 12 18 18 C 1.46500 * 119.99729 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46887 * 179.97438 * 18 17 15 20 20 C 1.52995 * 109.47036 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47222 * 180.02562 * 20 19 18 22 22 C 1.35956 * 116.99894 * 180.02562 * 21 20 19 23 23 C 1.38659 * 120.06740 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.97316 * 179.97438 * 23 22 21 25 25 C 1.38257 * 120.09241 * 0.02562 * 24 23 22 26 26 C 1.38261 * 120.13142 * 0.02562 * 25 24 23 27 27 C 1.38340 * 120.02530 * 359.70598 * 26 25 24 28 28 F 1.35100 * 120.04698 * 180.27772 * 27 26 25 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 34 34 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 35 35 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 36 36 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 37 37 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 38 38 H 0.96999 * 119.99932 * 359.97438 * 17 15 14 39 39 H 1.08990 * 109.47120 * 299.99491 * 18 17 15 40 40 H 1.09003 * 109.47163 * 60.00075 * 18 17 15 41 41 H 1.09001 * 109.46708 * 299.99898 * 19 18 17 42 42 H 1.08994 * 109.47017 * 60.00072 * 19 18 17 43 43 H 1.09007 * 109.47170 * 299.99932 * 20 19 18 44 44 H 1.09000 * 109.47305 * 59.99602 * 20 19 18 45 45 H 1.08005 * 120.01196 * 359.95384 * 23 22 21 46 46 H 1.07995 * 119.95540 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.93674 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.98748 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 8 3.1155 -1.4988 3.4437 17 7 2.1795 -0.0439 4.8326 18 6 2.8783 -0.6239 5.9822 19 6 2.4919 0.1383 7.2514 20 6 3.2222 -0.4669 8.4519 21 8 2.8609 0.2446 9.6374 22 6 3.4269 -0.1693 10.8022 23 6 4.3106 -1.2378 10.8041 24 6 4.8851 -1.6565 11.9890 25 6 4.5795 -1.0118 13.1733 26 6 3.6981 0.0533 13.1763 27 6 3.1242 0.4803 11.9922 28 9 2.2672 1.5247 11.9938 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1611 -3.4845 33 1 1.8764 -2.6150 0.3648 34 1 1.9053 -2.5654 2.1441 35 1 0.4385 -2.0742 1.2640 36 1 1.9297 1.0872 2.3124 37 1 0.5722 -0.0344 2.5726 38 1 1.5812 0.7092 4.9581 39 1 2.5972 -1.6716 6.0875 40 1 3.9548 -0.5501 5.8281 41 1 2.7734 1.1861 7.1458 42 1 1.4155 0.0650 7.4057 43 1 2.9412 -1.5148 8.5576 44 1 4.2986 -0.3933 8.2973 45 1 4.5496 -1.7428 9.8797 46 1 5.5736 -2.4885 11.9900 47 1 5.0297 -1.3415 14.0981 48 1 3.4607 0.5549 14.1028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161935356.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:43 Heat of formation + Delta-G solvation = -105.623937 kcal Electronic energy + Delta-G solvation = -27834.556377 eV Core-core repulsion = 23610.865094 eV Total energy + Delta-G solvation = -4223.691283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.83971 -41.08903 -40.82130 -38.67244 -38.38089 -36.44638 -34.66999 -33.30485 -31.67021 -31.06685 -30.59724 -29.13447 -27.27349 -26.91440 -25.44873 -23.93404 -23.36634 -22.46394 -21.78067 -20.80796 -19.48663 -18.40058 -18.15132 -17.87772 -17.60296 -17.57273 -16.92857 -16.81287 -16.64878 -16.31510 -15.92235 -15.83832 -15.41077 -15.37174 -15.18226 -14.85442 -14.67715 -14.22165 -14.17600 -13.83067 -13.48495 -13.33243 -13.19433 -12.89583 -12.81062 -12.77539 -12.62121 -12.58858 -12.52898 -12.48971 -12.18640 -12.01049 -11.99005 -11.87877 -11.69155 -10.98147 -10.65504 -10.47395 -10.06950 -9.95243 -9.23917 -8.83147 -8.10088 -6.19665 0.11939 0.25916 1.43716 1.44995 1.52693 1.69415 1.78768 2.32474 2.46365 2.60200 3.19313 3.23120 3.48090 3.70521 3.81680 3.84503 3.89422 4.02330 4.09137 4.21482 4.32120 4.34724 4.38015 4.41682 4.46678 4.54716 4.61397 4.65360 4.72832 4.85422 4.92405 4.96895 5.00299 5.06756 5.09509 5.13668 5.23220 5.25783 5.43333 5.48360 5.54230 5.70124 5.71983 5.81581 6.17764 6.26562 6.47278 6.51275 6.77065 6.92127 7.33683 7.49010 8.95719 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035705 B = 0.001464 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.021572 B =19122.573705 C =19649.137431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.015 0.985 4 C -0.518 4.518 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.282 1.282 10 H -0.276 1.276 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.043 3.957 14 C 0.034 3.966 15 C 0.519 3.481 16 O -0.561 6.561 17 N -0.721 5.721 18 C 0.128 3.872 19 C -0.119 4.119 20 C 0.060 3.940 21 O -0.329 6.329 22 C 0.079 3.921 23 C -0.188 4.188 24 C -0.086 4.086 25 C -0.127 4.127 26 C -0.118 4.118 27 C 0.030 3.970 28 F -0.152 7.152 29 H 0.035 0.965 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.019 0.981 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.154 0.846 46 H 0.161 0.839 47 H 0.164 0.836 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.443 -2.332 33.524 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.557 4.557 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.306 3.694 16 O -0.439 6.439 17 N -0.376 5.376 18 C 0.004 3.996 19 C -0.156 4.156 20 C -0.015 4.015 21 O -0.243 6.243 22 C 0.033 3.967 23 C -0.207 4.207 24 C -0.104 4.104 25 C -0.145 4.145 26 C -0.137 4.137 27 C 0.010 3.990 28 F -0.130 7.130 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.037 0.963 36 H 0.124 0.876 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.172 0.828 46 H 0.179 0.821 47 H 0.182 0.818 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.251 -2.711 33.201 33.723 hybrid contribution -1.098 0.321 -1.181 1.644 sum 4.153 -2.390 32.020 32.376 Atomic orbital electron populations 1.22209 0.99762 0.99282 1.00594 1.19142 0.90422 0.93113 0.86551 0.96713 1.21334 1.30721 1.12489 0.91129 0.93124 1.25616 0.95401 0.95832 1.01552 1.69981 1.37675 1.23955 1.24069 0.85636 0.78609 0.78693 0.78809 1.20711 1.20138 1.19885 1.61920 1.60281 1.02570 1.01275 1.22209 0.96462 0.90266 1.01589 1.21998 0.98673 0.99689 0.89379 1.20774 0.81339 0.82798 0.84498 1.90634 1.38409 1.29348 1.85522 1.45794 1.48813 1.36928 1.06049 1.21091 0.97150 0.97531 0.83795 1.21543 1.02233 1.01094 0.90763 1.22833 1.00588 0.96395 0.81720 1.86057 1.66189 1.57738 1.14363 1.19274 0.96148 0.95835 0.85419 1.21512 0.99631 0.97727 1.01818 1.21485 0.98185 0.99615 0.91153 1.21372 0.97881 0.95189 1.00096 1.21358 0.97521 0.98622 0.96204 1.17518 0.97594 0.90253 0.93618 1.91451 1.68570 1.55712 1.97310 0.94593 0.91820 0.95140 0.92913 0.93140 0.91463 0.96301 0.87595 0.90920 0.74772 0.91488 0.91714 0.89581 0.89464 0.90130 0.90222 0.82834 0.82145 0.81807 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.45 8.28 71.98 0.60 -6.86 16 2 C 0.21 10.83 2.34 44.17 0.10 10.94 16 3 H 0.01 0.82 8.03 -2.38 -0.02 0.80 16 4 C -0.52 -29.06 7.94 25.60 0.20 -28.86 16 5 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 6 C 0.01 0.82 5.30 84.66 0.45 1.27 16 7 N -0.92 -52.20 11.32 21.45 0.24 -51.95 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.54 -23.75 4.48 -906.03 -4.06 -27.81 16 13 C 0.04 1.82 8.53 127.69 1.09 2.91 16 14 C 0.03 1.14 4.89 85.56 0.42 1.56 16 15 C 0.52 16.16 7.52 87.66 0.66 16.82 16 16 O -0.56 -22.13 14.33 -3.01 -0.04 -22.18 16 17 N -0.72 -14.93 5.56 -463.06 -2.57 -17.51 16 18 C 0.13 2.20 5.67 86.38 0.49 2.69 16 19 C -0.12 -1.49 5.70 30.59 0.17 -1.31 16 20 C 0.06 0.75 4.74 71.98 0.34 1.09 16 21 O -0.33 -6.20 10.00 -93.06 -0.93 -7.13 16 22 C 0.08 1.39 6.69 22.53 0.15 1.54 16 23 C -0.19 -2.23 9.04 22.36 0.20 -2.03 16 24 C -0.09 -0.70 10.04 22.26 0.22 -0.48 16 25 C -0.13 -0.99 10.04 22.28 0.22 -0.77 16 26 C -0.12 -1.41 10.02 22.30 0.22 -1.19 16 27 C 0.03 0.55 7.31 22.46 0.16 0.71 16 28 F -0.15 -3.43 17.11 44.97 0.77 -2.66 16 29 H 0.04 1.42 6.75 -2.39 -0.02 1.41 16 30 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 31 H 0.03 1.39 6.38 -2.39 -0.02 1.38 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.05 2.32 6.53 -2.39 -0.02 2.31 16 34 H 0.07 2.74 5.82 -2.39 -0.01 2.73 16 35 H 0.02 0.75 6.28 -2.39 -0.01 0.74 16 36 H 0.11 3.32 8.00 -2.38 -0.02 3.30 16 37 H 0.07 2.19 6.94 -2.39 -0.02 2.18 16 38 H 0.42 6.10 8.47 -92.71 -0.79 5.31 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 0.81 7.66 -2.38 -0.02 0.79 16 44 H 0.08 0.82 7.66 -2.39 -0.02 0.81 16 45 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 46 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 47 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 48 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -72.92 390.43 1.34 -71.58 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.20 Total: 13.25 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.71 Total: -1.96 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -6.39 Total: -97.27 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.97 Total: -29.31 kcal Atomic # 9 Polarization: -3.43 SS G_CDS: 0.77 Total: -2.66 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.92 1.34 -71.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161935356.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.043 kcal (2) G-P(sol) polarization free energy of solvation -72.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds