Wall clock time and date at job start Tue Mar 31 2020 21:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 117.00396 * 2 1 4 4 C 1.38662 * 120.05861 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96551 * 179.70617 * 4 3 2 6 6 C 1.38257 * 120.09707 * 0.54788 * 5 4 3 7 7 C 1.50701 * 119.94036 * 179.72525 * 6 5 4 8 8 N 1.46501 * 109.47067 * 269.72832 * 7 6 5 9 9 C 1.46499 * 119.99786 * 269.99591 * 8 7 6 10 10 C 1.34773 * 119.99862 * 90.00114 * 8 7 6 11 11 O 1.21284 * 120.00375 * 4.97351 * 10 8 7 12 12 C 1.50707 * 119.99947 * 184.97936 * 10 8 7 13 13 H 1.08996 * 109.46792 * 311.47196 * 12 10 8 14 14 C 1.53003 * 109.46989 * 71.47113 * 12 10 8 15 15 N 1.46898 * 109.47103 * 191.47272 * 12 10 8 16 16 C 1.46897 * 111.00109 * 298.94968 * 15 12 10 17 17 C 1.46902 * 111.00050 * 174.99751 * 15 12 10 18 18 C 1.50700 * 109.47479 * 189.99867 * 17 15 12 19 19 H 1.07998 * 119.99513 * 0.02562 * 18 17 15 20 20 C 1.37869 * 120.00208 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.46858 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47237 * 120.00221 * 22 20 18 25 25 H 1.48498 * 109.46709 * 239.99820 * 22 20 18 26 26 C 1.38257 * 120.12483 * 359.45369 * 6 5 4 27 27 C 1.38331 * 120.03045 * 0.27233 * 26 6 5 28 28 F 1.35100 * 120.05088 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.47074 * 60.00022 * 1 2 3 30 30 H 1.08998 * 109.47485 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00058 * 1 2 3 32 32 H 1.08003 * 120.01853 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.95456 * 180.29749 * 5 4 3 34 34 H 1.09000 * 109.47344 * 149.72634 * 7 6 5 35 35 H 1.09001 * 109.46644 * 29.72734 * 7 6 5 36 36 H 1.08994 * 109.47272 * 275.07804 * 9 8 7 37 37 H 1.08999 * 109.47208 * 35.08151 * 9 8 7 38 38 H 1.09002 * 109.46505 * 155.08170 * 9 8 7 39 39 H 1.08999 * 109.47174 * 307.73301 * 14 12 10 40 40 H 1.08994 * 109.47070 * 67.73982 * 14 12 10 41 41 H 1.09001 * 109.46369 * 187.73690 * 14 12 10 42 42 H 1.09002 * 109.46918 * 60.00400 * 16 15 12 43 43 H 1.08999 * 109.47406 * 179.97438 * 16 15 12 44 44 H 1.09002 * 109.47449 * 300.00445 * 16 15 12 45 45 H 1.09003 * 109.47057 * 310.00660 * 17 15 12 46 46 H 1.08998 * 109.46925 * 69.99619 * 17 15 12 47 47 H 0.97001 * 120.00591 * 180.02562 * 21 20 18 48 48 H 1.08005 * 119.98836 * 180.25364 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3750 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6776 0.0008 7 6 3.9851 5.0211 0.0013 8 7 4.2062 5.4570 -1.3798 9 6 5.4478 5.1002 -2.0706 10 6 3.2673 6.1863 -2.0146 11 8 2.2806 6.5584 -1.4155 12 6 3.4435 6.5393 -3.4691 13 1 4.4455 6.9380 -3.6274 14 6 3.2522 5.2856 -4.3251 15 7 2.4483 7.5499 -3.8517 16 6 1.0830 7.0377 -3.6747 17 6 2.6648 8.0061 -5.2312 18 6 1.7937 9.2046 -5.5066 19 1 1.1446 9.5892 -4.7339 20 6 1.8262 9.8107 -6.7445 21 7 2.6171 9.3426 -7.6852 22 14 0.7470 11.2968 -7.0856 23 1 -0.0445 11.6225 -5.8722 24 1 1.6013 12.4567 -7.4461 25 1 -0.1740 10.9919 -8.2098 26 6 4.0580 2.5197 0.0003 27 6 3.4334 1.2855 -0.0002 28 9 4.1713 0.1538 -0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2137 2.3200 0.0005 33 1 1.3343 4.5115 0.0120 34 1 4.9432 4.9416 0.5150 35 1 3.3563 5.7479 0.5155 36 1 6.2216 5.8279 -1.8262 37 1 5.7684 4.1082 -1.7525 38 1 5.2771 5.0991 -3.1472 39 1 3.8958 4.4891 -3.9516 40 1 2.2114 4.9660 -4.2739 41 1 3.5134 5.5088 -5.3595 42 1 0.9272 6.7722 -2.6291 43 1 0.3662 7.8060 -3.9647 44 1 0.9423 6.1550 -4.2986 45 1 3.7116 8.2796 -5.3635 46 1 2.4087 7.2041 -5.9235 47 1 2.6403 9.7691 -8.5561 48 1 5.1364 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177189994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:10 Heat of formation + Delta-G solvation = -63.983513 kcal Electronic energy + Delta-G solvation = -30024.945685 eV Core-core repulsion = 25803.060067 eV Total energy + Delta-G solvation = -4221.885619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.98496 -40.54209 -39.92829 -38.05824 -36.47593 -35.38669 -32.75580 -31.67504 -31.00353 -29.95962 -28.21064 -27.03328 -26.94594 -26.01091 -25.07337 -23.38433 -23.01732 -21.83332 -20.29855 -18.77848 -18.52640 -17.26467 -17.12972 -16.74866 -16.47429 -16.41337 -15.73431 -15.61586 -15.29720 -15.06795 -14.71256 -14.56246 -14.42149 -14.21177 -13.78539 -13.62274 -13.23359 -13.00583 -12.88300 -12.65437 -12.55586 -12.48253 -12.24692 -12.02852 -11.90110 -11.63553 -11.41021 -11.39274 -11.34103 -11.05107 -10.97391 -10.77694 -10.61756 -10.37245 -9.95604 -9.28558 -9.21950 -8.91153 -8.70358 -8.42343 -8.37741 -7.15797 -6.01774 -4.01852 0.85560 0.90170 2.79303 2.87207 2.95373 3.32465 3.39765 3.44372 3.46670 3.94005 4.34083 4.44459 4.48896 4.60933 4.76722 4.79071 4.89382 4.95265 5.02156 5.04638 5.10724 5.18394 5.19798 5.34405 5.35888 5.46051 5.52284 5.57538 5.60533 5.62993 5.79540 5.91468 5.96590 6.07165 6.24376 6.32053 6.33849 6.37555 6.56849 6.64087 6.94265 7.03459 7.27842 7.36033 7.43497 7.83514 8.08316 8.22767 8.45202 8.57956 9.06684 9.62156 11.09316 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002514 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.582751 B =11133.581884 C =11696.759649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.096 3.904 4 C -0.182 4.182 5 C -0.063 4.063 6 C -0.112 4.112 7 C 0.158 3.842 8 N -0.619 5.619 9 C 0.069 3.931 10 C 0.529 3.471 11 O -0.518 6.518 12 C 0.065 3.935 13 H 0.097 0.903 14 C -0.184 4.184 15 N -0.518 5.518 16 C 0.016 3.984 17 C 0.193 3.807 18 C -0.503 4.503 19 H 0.065 0.935 20 C 0.054 3.946 21 N -0.900 5.900 22 Si 0.897 3.103 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.285 1.285 26 C -0.103 4.103 27 C 0.063 3.937 28 F -0.135 7.135 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.006 0.994 45 H 0.028 0.972 46 H -0.005 1.005 47 H 0.260 0.740 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -17.996 16.809 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.049 3.951 4 C -0.201 4.201 5 C -0.082 4.082 6 C -0.114 4.114 7 C 0.036 3.964 8 N -0.354 5.354 9 C -0.074 4.074 10 C 0.318 3.682 11 O -0.392 6.392 12 C -0.048 4.048 13 H 0.115 0.885 14 C -0.243 4.243 15 N -0.242 5.242 16 C -0.131 4.131 17 C 0.068 3.932 18 C -0.542 4.542 19 H 0.083 0.917 20 C -0.147 4.147 21 N -0.540 5.540 22 Si 0.725 3.275 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.212 1.212 26 C -0.123 4.123 27 C 0.043 3.957 28 F -0.113 7.113 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.158 0.842 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.025 0.975 45 H 0.046 0.954 46 H 0.013 0.987 47 H 0.070 0.930 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.394 -17.552 17.245 24.722 hybrid contribution -0.609 -0.114 -1.057 1.226 sum 1.785 -17.666 16.187 24.027 Atomic orbital electron populations 1.23131 0.77782 1.04276 1.01721 1.86119 1.21853 1.25881 1.88679 1.19044 0.90860 0.85641 0.99505 1.21193 1.00443 0.91400 1.07079 1.21135 0.94163 0.97678 0.95202 1.20067 0.93762 0.95213 1.02337 1.20224 1.00647 0.91749 0.83805 1.47942 1.19321 1.54546 1.13623 1.21999 0.85950 1.00510 0.98919 1.20953 0.81918 0.75966 0.89406 1.90518 1.29009 1.52211 1.67485 1.21630 0.99832 0.93238 0.90054 0.88519 1.22485 1.02772 0.97512 1.01551 1.62175 1.01448 1.32334 1.28253 1.22693 0.90819 0.97958 1.01676 1.19781 0.97434 0.94910 0.81100 1.21205 1.23273 1.12318 0.97362 0.91730 1.24973 0.95935 0.97633 0.96120 1.69962 1.38660 1.41215 1.04205 0.86444 0.80303 0.82556 0.78168 1.19614 1.21029 1.21167 1.20885 1.00740 0.89703 1.00951 1.16902 0.85912 0.82932 1.09923 1.91493 1.76383 1.49054 1.94408 0.92239 0.87938 0.92359 0.84417 0.84203 0.89635 0.88472 0.92298 0.91583 0.89753 0.92441 0.91748 0.90757 0.89730 0.91314 0.97543 0.95432 0.98737 0.93042 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.38 10.36 -19.58 -0.20 -3.58 16 3 C 0.10 1.07 6.69 -39.18 -0.26 0.81 16 4 C -0.18 -1.84 9.04 -39.44 -0.36 -2.20 16 5 C -0.06 -0.69 9.69 -39.59 -0.38 -1.07 16 6 C -0.11 -1.15 5.46 -104.61 -0.57 -1.72 16 7 C 0.16 1.57 5.59 -5.19 -0.03 1.55 16 8 N -0.62 -7.35 2.86 -182.95 -0.52 -7.87 16 9 C 0.07 0.62 9.81 59.85 0.59 1.21 16 10 C 0.53 8.45 6.80 -10.98 -0.07 8.38 16 11 O -0.52 -9.59 12.84 5.55 0.07 -9.52 16 12 C 0.07 1.14 1.91 -68.86 -0.13 1.01 16 13 H 0.10 1.62 7.30 -51.93 -0.38 1.24 16 14 C -0.18 -2.90 8.06 37.16 0.30 -2.60 16 15 N -0.52 -11.52 4.61 -237.73 -1.10 -12.62 16 16 C 0.02 0.35 8.60 60.06 0.52 0.86 16 17 C 0.19 4.98 4.17 -4.98 -0.02 4.96 16 18 C -0.50 -14.29 8.46 -34.44 -0.29 -14.58 16 19 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 20 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 21 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 C -0.10 -1.00 9.67 -39.54 -0.38 -1.38 16 27 C 0.06 0.72 7.31 -39.30 -0.29 0.43 16 28 F -0.13 -1.67 17.11 2.25 0.04 -1.63 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.09 16 32 H 0.14 1.10 6.30 -52.48 -0.33 0.77 16 33 H 0.14 1.61 7.84 -52.48 -0.41 1.20 16 34 H 0.09 0.62 8.01 -51.93 -0.42 0.20 16 35 H 0.10 1.08 7.30 -51.93 -0.38 0.70 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 38 H 0.08 0.81 4.45 -51.93 -0.23 0.58 16 39 H 0.06 0.73 6.04 -51.93 -0.31 0.42 16 40 H 0.06 1.08 5.99 -51.93 -0.31 0.77 16 41 H 0.07 1.26 7.16 -51.93 -0.37 0.89 16 42 H 0.08 1.73 5.06 -51.93 -0.26 1.47 16 43 H 0.07 1.57 6.76 -51.93 -0.35 1.22 16 44 H 0.01 0.13 6.12 -51.93 -0.32 -0.19 16 45 H 0.03 0.75 8.00 -51.93 -0.42 0.33 16 46 H -0.01 -0.14 7.12 -51.93 -0.37 -0.51 16 47 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -33.60 385.11 -7.54 -41.14 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.85 Total: -0.94 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -0.49 Total: -1.73 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.88 Total: -46.37 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.13 Total: -13.10 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.63 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.60 -7.54 -41.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177189994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.841 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds