Wall clock time and date at job start Tue Mar 31 2020 21:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35950 * 117.00396 * 2 1 4 4 C 1.38662 * 120.05861 * 0.02562 * 3 2 1 5 5 C 1.38185 * 119.96551 * 179.70617 * 4 3 2 6 6 C 1.38257 * 120.09707 * 0.54788 * 5 4 3 7 7 C 1.50701 * 119.94036 * 179.72525 * 6 5 4 8 8 N 1.46501 * 109.47067 * 269.72832 * 7 6 5 9 9 C 1.46499 * 119.99786 * 269.99591 * 8 7 6 10 10 C 1.34773 * 119.99862 * 90.00114 * 8 7 6 11 11 O 1.21284 * 120.00375 * 4.97351 * 10 8 7 12 12 C 1.50707 * 119.99947 * 184.97936 * 10 8 7 13 13 H 1.08996 * 109.46792 * 311.47196 * 12 10 8 14 14 C 1.53003 * 109.46989 * 71.47113 * 12 10 8 15 15 N 1.46898 * 109.47103 * 191.47272 * 12 10 8 16 16 C 1.46897 * 111.00109 * 298.94968 * 15 12 10 17 17 C 1.46902 * 111.00050 * 174.99751 * 15 12 10 18 18 C 1.50700 * 109.47479 * 189.99867 * 17 15 12 19 19 H 1.07998 * 119.99513 * 0.02562 * 18 17 15 20 20 C 1.37869 * 120.00208 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00111 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.46858 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47237 * 120.00221 * 22 20 18 25 25 H 1.48498 * 109.46709 * 239.99820 * 22 20 18 26 26 C 1.38257 * 120.12483 * 359.45369 * 6 5 4 27 27 C 1.38331 * 120.03045 * 0.27233 * 26 6 5 28 28 F 1.35100 * 120.05088 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.47074 * 60.00022 * 1 2 3 30 30 H 1.08998 * 109.47485 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47321 * 300.00058 * 1 2 3 32 32 H 1.08003 * 120.01853 * 359.97438 * 4 3 2 33 33 H 1.08004 * 119.95456 * 180.29749 * 5 4 3 34 34 H 1.09000 * 109.47344 * 149.72634 * 7 6 5 35 35 H 1.09001 * 109.46644 * 29.72734 * 7 6 5 36 36 H 1.08994 * 109.47272 * 275.07804 * 9 8 7 37 37 H 1.08999 * 109.47208 * 35.08151 * 9 8 7 38 38 H 1.09002 * 109.46505 * 155.08170 * 9 8 7 39 39 H 1.08999 * 109.47174 * 307.73301 * 14 12 10 40 40 H 1.08994 * 109.47070 * 67.73982 * 14 12 10 41 41 H 1.09001 * 109.46369 * 187.73690 * 14 12 10 42 42 H 1.09002 * 109.46918 * 60.00400 * 16 15 12 43 43 H 1.08999 * 109.47406 * 179.97438 * 16 15 12 44 44 H 1.09002 * 109.47449 * 300.00445 * 16 15 12 45 45 H 1.09003 * 109.47057 * 310.00660 * 17 15 12 46 46 H 1.08998 * 109.46925 * 69.99619 * 17 15 12 47 47 H 0.97001 * 120.00591 * 180.02562 * 21 20 18 48 48 H 1.08005 * 119.98836 * 180.25364 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2923 2.3750 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6776 0.0008 7 6 3.9851 5.0211 0.0013 8 7 4.2062 5.4570 -1.3798 9 6 5.4478 5.1002 -2.0706 10 6 3.2673 6.1863 -2.0146 11 8 2.2806 6.5584 -1.4155 12 6 3.4435 6.5393 -3.4691 13 1 4.4455 6.9380 -3.6274 14 6 3.2522 5.2856 -4.3251 15 7 2.4483 7.5499 -3.8517 16 6 1.0830 7.0377 -3.6747 17 6 2.6648 8.0061 -5.2312 18 6 1.7937 9.2046 -5.5066 19 1 1.1446 9.5892 -4.7339 20 6 1.8262 9.8107 -6.7445 21 7 2.6171 9.3426 -7.6852 22 14 0.7470 11.2968 -7.0856 23 1 -0.0445 11.6225 -5.8722 24 1 1.6013 12.4567 -7.4461 25 1 -0.1740 10.9919 -8.2098 26 6 4.0580 2.5197 0.0003 27 6 3.4334 1.2855 -0.0002 28 9 4.1713 0.1538 -0.0013 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2137 2.3200 0.0005 33 1 1.3343 4.5115 0.0120 34 1 4.9432 4.9416 0.5150 35 1 3.3563 5.7479 0.5155 36 1 6.2216 5.8279 -1.8262 37 1 5.7684 4.1082 -1.7525 38 1 5.2771 5.0991 -3.1472 39 1 3.8958 4.4891 -3.9516 40 1 2.2114 4.9660 -4.2739 41 1 3.5134 5.5088 -5.3595 42 1 0.9272 6.7722 -2.6291 43 1 0.3662 7.8060 -3.9647 44 1 0.9423 6.1550 -4.2986 45 1 3.7116 8.2796 -5.3635 46 1 2.4087 7.2041 -5.9235 47 1 2.6403 9.7691 -8.5561 48 1 5.1364 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177189994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:10 Heat of formation + Delta-G solvation = -85.821423 kcal Electronic energy + Delta-G solvation = -30025.892648 eV Core-core repulsion = 25803.060067 eV Total energy + Delta-G solvation = -4222.832581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85439 -41.54006 -40.91028 -38.97111 -37.93996 -36.47378 -34.80909 -32.75883 -31.78276 -31.28960 -29.05646 -28.84294 -27.75680 -27.11416 -26.64106 -24.94214 -23.78829 -22.88261 -21.77451 -19.96507 -19.33356 -18.54982 -18.22849 -17.95983 -17.78886 -17.22061 -16.93261 -16.59275 -16.54615 -16.09418 -16.01369 -15.81915 -15.49636 -15.24871 -15.20132 -14.84526 -14.43857 -14.20823 -14.15771 -14.01935 -13.56633 -13.37887 -13.25875 -13.15867 -12.92237 -12.85902 -12.71365 -12.68252 -12.57815 -12.47888 -12.30929 -12.12083 -12.09084 -12.02960 -11.96477 -11.33145 -10.60547 -10.35395 -9.98789 -9.66884 -9.22189 -8.92649 -8.20003 -6.28548 0.07308 0.09540 1.40297 1.41082 1.54884 1.65004 1.97511 2.14707 2.41311 2.60007 3.12536 3.14804 3.39111 3.56164 3.67041 3.73604 3.95873 4.09237 4.12257 4.20065 4.29165 4.31741 4.32284 4.39460 4.47571 4.58546 4.61518 4.66200 4.68641 4.69758 4.83399 4.84135 4.86035 4.98072 4.99808 5.11218 5.12563 5.21645 5.28998 5.34119 5.44940 5.59108 5.64601 5.66558 6.04750 6.21441 6.31372 6.35208 6.65638 6.86940 7.26486 7.40628 8.90916 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018159 B = 0.002514 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.582751 B =11133.581884 C =11696.759649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.087 3.913 4 C -0.184 4.184 5 C -0.073 4.073 6 C -0.115 4.115 7 C 0.159 3.841 8 N -0.608 5.608 9 C 0.060 3.940 10 C 0.529 3.471 11 O -0.550 6.550 12 C 0.060 3.940 13 H 0.104 0.896 14 C -0.172 4.172 15 N -0.533 5.533 16 C 0.028 3.972 17 C 0.212 3.788 18 C -0.524 4.524 19 H 0.055 0.945 20 C 0.005 3.995 21 N -0.931 5.931 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.277 1.277 26 C -0.090 4.090 27 C 0.041 3.959 28 F -0.144 7.144 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.154 0.846 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.096 0.904 43 H 0.045 0.955 44 H 0.010 0.990 45 H 0.009 0.991 46 H -0.027 1.027 47 H 0.265 0.735 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 -18.575 17.800 25.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.041 3.959 4 C -0.202 4.202 5 C -0.092 4.092 6 C -0.117 4.117 7 C 0.037 3.963 8 N -0.341 5.341 9 C -0.082 4.082 10 C 0.318 3.682 11 O -0.428 6.428 12 C -0.052 4.052 13 H 0.122 0.878 14 C -0.231 4.231 15 N -0.257 5.257 16 C -0.120 4.120 17 C 0.086 3.914 18 C -0.563 4.563 19 H 0.073 0.927 20 C -0.193 4.193 21 N -0.571 5.571 22 Si 0.790 3.210 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.203 1.203 26 C -0.109 4.109 27 C 0.021 3.979 28 F -0.123 7.123 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.027 0.973 46 H -0.009 1.009 47 H 0.074 0.926 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.158 -18.167 18.258 25.950 hybrid contribution -0.802 -0.027 -1.308 1.534 sum 2.356 -18.195 16.950 24.978 Atomic orbital electron populations 1.23412 0.75860 1.05909 1.02516 1.86096 1.23956 1.25947 1.88631 1.19238 0.91166 0.86069 0.99439 1.21329 1.01324 0.90843 1.06717 1.21197 0.94794 0.97536 0.95662 1.20072 0.93473 0.95494 1.02634 1.20396 1.02337 0.91065 0.82499 1.47898 1.19050 1.52843 1.14319 1.22264 0.84823 1.02745 0.98332 1.20548 0.82431 0.76695 0.88574 1.90493 1.30587 1.53952 1.67788 1.21722 0.98638 0.92898 0.91967 0.87844 1.22352 1.02699 0.97692 1.00325 1.62017 1.02865 1.35114 1.25727 1.22573 0.89998 0.97116 1.02297 1.19391 0.95604 0.93616 0.82835 1.21483 1.23779 1.13440 0.97565 0.92670 1.25817 0.97169 1.00510 0.95797 1.70062 1.39834 1.42565 1.04665 0.85393 0.78577 0.78918 0.78096 1.19283 1.20134 1.20306 1.21080 1.02012 0.88549 0.99301 1.17226 0.86219 0.83295 1.11117 1.91465 1.76559 1.49642 1.94617 0.91817 0.86011 0.91143 0.82845 0.85278 0.85927 0.89812 0.90590 0.88600 0.90518 0.88909 0.92987 0.92464 0.88621 0.93599 0.97205 0.97336 1.00909 0.92644 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.91 10.36 -92.98 -0.96 -7.87 16 3 C 0.09 1.87 6.69 22.53 0.15 2.02 16 4 C -0.18 -3.53 9.04 22.36 0.20 -3.33 16 5 C -0.07 -1.52 9.69 22.26 0.22 -1.30 16 6 C -0.12 -2.10 5.46 -19.86 -0.11 -2.21 16 7 C 0.16 2.73 5.59 85.63 0.48 3.21 16 8 N -0.61 -12.91 2.86 -851.13 -2.43 -15.34 16 9 C 0.06 0.87 9.81 127.77 1.25 2.12 16 10 C 0.53 16.39 6.80 87.66 0.60 16.98 16 11 O -0.55 -20.28 12.84 -3.04 -0.04 -20.32 16 12 C 0.06 2.09 1.91 44.17 0.08 2.17 16 13 H 0.10 3.42 7.30 -2.39 -0.02 3.40 16 14 C -0.17 -5.34 8.06 71.98 0.58 -4.76 16 15 N -0.53 -24.23 4.61 -906.03 -4.18 -28.40 16 16 C 0.03 1.22 8.60 127.69 1.10 2.31 16 17 C 0.21 11.29 4.17 85.56 0.36 11.65 16 18 C -0.52 -30.49 8.46 25.60 0.22 -30.27 16 19 H 0.06 3.25 7.12 -2.91 -0.02 3.23 16 20 C 0.01 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -55.66 13.29 21.44 0.28 -55.38 16 22 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.09 -1.50 9.67 22.30 0.22 -1.28 16 27 C 0.04 0.88 7.31 22.45 0.16 1.04 16 28 F -0.14 -3.40 17.11 44.97 0.77 -2.63 16 29 H 0.06 0.69 7.66 -2.39 -0.02 0.68 16 30 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 32 H 0.15 2.30 6.30 -2.91 -0.02 2.29 16 33 H 0.13 2.97 7.84 -2.91 -0.02 2.94 16 34 H 0.12 1.23 8.01 -2.39 -0.02 1.21 16 35 H 0.08 1.73 7.30 -2.39 -0.02 1.71 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 0.87 8.11 -2.39 -0.02 0.85 16 38 H 0.08 1.25 4.45 -2.39 -0.01 1.24 16 39 H 0.09 2.18 6.04 -2.39 -0.01 2.17 16 40 H 0.05 1.74 5.99 -2.39 -0.01 1.73 16 41 H 0.06 1.96 7.16 -2.39 -0.02 1.95 16 42 H 0.10 3.99 5.06 -2.39 -0.01 3.98 16 43 H 0.05 2.16 6.76 -2.39 -0.02 2.14 16 44 H 0.01 0.41 6.12 -2.39 -0.01 0.39 16 45 H 0.01 0.48 8.00 -2.39 -0.02 0.46 16 46 H -0.03 -1.52 7.12 -2.39 -0.02 -1.53 16 47 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 48 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -74.08 385.11 3.53 -70.55 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.98 Total: 11.89 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 7.08 Total: 0.42 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -6.33 Total: -99.12 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.00 Total: -28.19 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.77 Total: -2.63 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -74.08 3.53 -70.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177189994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.273 kcal (2) G-P(sol) polarization free energy of solvation -74.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds