Wall clock time and date at job start Tue Mar 31 2020 21:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47390 * 2 1 4 4 C 1.46500 * 119.99910 * 270.00005 * 3 2 1 5 5 C 1.50698 * 109.47402 * 270.00114 * 4 3 2 6 6 H 1.08008 * 119.99447 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00345 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99791 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99872 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47146 * 90.00275 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00207 * 9 7 5 12 12 H 1.48500 * 109.47218 * 330.00508 * 9 7 5 13 13 C 1.34773 * 119.99821 * 89.99940 * 3 2 1 14 14 O 1.21283 * 119.99533 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00196 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47066 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.46917 * 324.99892 * 17 16 15 19 19 C 1.52993 * 109.47269 * 84.99904 * 17 16 15 20 20 C 1.50692 * 109.46945 * 205.00102 * 17 16 15 21 21 C 1.38173 * 120.01805 * 339.72210 * 20 17 16 22 22 C 1.38433 * 120.03575 * 179.79380 * 21 20 17 23 23 F 1.35096 * 119.97241 * 180.23172 * 22 21 20 24 24 C 1.38478 * 120.05492 * 0.46125 * 22 21 20 25 25 C 1.38130 * 120.03246 * 359.79385 * 24 22 21 26 26 C 1.38684 * 120.01977 * 160.00040 * 20 17 16 27 27 O 1.35950 * 120.02722 * 359.94905 * 26 20 17 28 28 C 1.42898 * 117.00054 * 179.97438 * 27 26 20 29 29 H 1.09004 * 109.47076 * 300.00326 * 1 2 3 30 30 H 1.08997 * 109.46936 * 60.00002 * 1 2 3 31 31 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47563 * 239.99806 * 2 1 3 33 33 H 1.09007 * 109.47473 * 120.00041 * 2 1 3 34 34 H 1.09005 * 109.46820 * 30.00014 * 4 3 2 35 35 H 1.08995 * 109.47167 * 149.99982 * 4 3 2 36 36 H 0.97004 * 119.99413 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47558 * 60.00201 * 15 13 3 38 38 H 1.08998 * 109.47216 * 299.99863 * 15 13 3 39 39 H 1.00901 * 110.99869 * 56.04737 * 16 15 13 40 40 H 1.09000 * 109.47161 * 60.00137 * 19 17 16 41 41 H 1.09006 * 109.47343 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.47587 * 300.00069 * 19 17 16 43 43 H 1.08006 * 119.98251 * 0.02562 * 21 20 17 44 44 H 1.08007 * 119.98439 * 179.76638 * 24 22 21 45 45 H 1.07996 * 120.01418 * 179.97438 * 25 24 22 46 46 H 1.09002 * 109.47081 * 60.00708 * 28 27 26 47 47 H 1.09003 * 109.47090 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.47291 * 300.00190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1840 -3.2569 9 14 3.0132 3.4359 -3.9287 10 1 3.1159 4.8561 -3.5069 11 1 3.4067 3.3136 -5.3554 12 1 1.6136 2.9694 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5889 17 6 2.0775 1.5456 4.8802 18 1 1.2180 0.8802 4.7984 19 6 3.3153 0.7345 5.2682 20 6 1.8080 2.5868 5.9357 21 6 2.2074 3.8942 5.7349 22 6 1.9563 4.8519 6.7025 23 9 2.3432 6.1307 6.5028 24 6 1.3130 4.4991 7.8769 25 6 0.9173 3.1917 8.0826 26 6 1.1642 2.2321 7.1117 27 8 0.7748 0.9452 7.3127 28 6 0.1175 0.6515 8.5471 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 5.7177 2.5745 -4.0828 37 1 2.6229 0.4187 2.5299 38 1 0.9445 1.0115 2.5302 39 1 1.7842 3.0649 3.5218 40 1 4.1748 1.3999 5.3500 41 1 3.1427 0.2439 6.2262 42 1 3.5103 -0.0187 4.5047 43 1 2.7125 4.1699 4.8209 44 1 1.1210 5.2464 8.6327 45 1 0.4161 2.9168 8.9989 46 1 -0.7914 1.2481 8.6257 47 1 -0.1388 -0.4075 8.5793 48 1 0.7815 0.8897 9.3780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179917251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:44 Heat of formation + Delta-G solvation = -81.451413 kcal Electronic energy + Delta-G solvation = -29544.827870 eV Core-core repulsion = 25322.184787 eV Total energy + Delta-G solvation = -4222.643083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92883 -40.68938 -39.22600 -37.84856 -36.29837 -35.27792 -32.75644 -31.98597 -30.36905 -30.27750 -29.34094 -28.07926 -27.56749 -25.86814 -23.82820 -22.96141 -22.50804 -21.82684 -20.65760 -18.75783 -18.19318 -17.40629 -17.25182 -16.88341 -16.39166 -16.22429 -15.88922 -15.56005 -15.33685 -14.97229 -14.71943 -14.55574 -14.50876 -13.94839 -13.74021 -13.46314 -13.28737 -13.02429 -12.98144 -12.77083 -12.63651 -12.33534 -12.18777 -12.10709 -12.00352 -11.92524 -11.70596 -11.41629 -11.32246 -11.23323 -10.95132 -10.82532 -10.66127 -10.46624 -10.12437 -9.49819 -9.30894 -8.96187 -8.54916 -8.42918 -8.29698 -7.67736 -6.04562 -4.02859 0.84849 0.94644 2.87647 3.25009 3.31769 3.37392 3.38747 3.39702 3.64914 4.04177 4.20213 4.29806 4.43131 4.55298 4.62403 4.73994 4.80856 4.94225 5.01620 5.05955 5.09615 5.23118 5.28717 5.30166 5.42590 5.46393 5.52627 5.56747 5.61772 5.71712 5.73644 5.78846 5.86627 5.93722 5.96242 6.01485 6.15702 6.27733 6.39710 6.46915 6.70985 6.93216 6.96548 7.03137 7.37419 7.40288 7.65660 8.30264 8.51660 8.98216 9.05018 9.55941 11.08974 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.002661 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.190511 B =10520.554375 C =11602.660727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.075 0.925 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.507 3.493 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.135 3.865 18 H 0.061 0.939 19 C -0.133 4.133 20 C -0.088 4.088 21 C -0.103 4.103 22 C 0.065 3.935 23 F -0.139 7.139 24 C -0.118 4.118 25 C -0.182 4.182 26 C 0.122 3.878 27 O -0.309 6.309 28 C 0.026 3.974 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.028 0.972 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.099 0.901 38 H 0.054 0.946 39 H 0.351 0.649 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.159 0.841 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.055 0.945 47 H 0.101 0.899 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.824 -4.844 24.976 28.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.327 5.327 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.293 3.707 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C 0.025 3.975 18 H 0.078 0.922 19 C -0.191 4.191 20 C -0.089 4.089 21 C -0.122 4.122 22 C 0.046 3.954 23 F -0.117 7.117 24 C -0.137 4.137 25 C -0.201 4.201 26 C 0.076 3.924 27 O -0.222 6.222 28 C -0.069 4.069 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.117 0.883 38 H 0.072 0.928 39 H 0.172 0.828 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.176 0.824 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.074 0.926 47 H 0.119 0.881 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.770 -4.451 24.658 28.123 hybrid contribution -1.435 0.803 -0.365 1.684 sum -14.204 -3.648 24.293 28.376 Atomic orbital electron populations 1.22234 0.96894 1.01533 1.02126 1.21433 0.93265 0.83975 1.03119 1.47929 1.64429 1.13367 1.06987 1.19623 0.97275 0.93336 0.80078 1.21340 0.95343 1.32785 1.07031 0.90736 1.24859 0.94978 0.95825 0.97388 1.69902 1.15121 1.45079 1.23559 0.86854 0.81438 0.81665 0.79731 1.19923 1.21132 1.19135 1.20195 0.78558 0.87097 0.84852 1.90674 1.44629 1.18073 1.86925 1.21929 0.99981 0.96872 0.90139 1.60299 1.63168 1.07100 0.99740 1.20247 0.98125 0.92632 0.86475 0.92166 1.21748 0.97056 0.99467 1.00809 1.19134 1.00631 0.94456 0.94666 1.21100 0.99705 0.91203 1.00153 1.17574 1.02247 0.79528 0.96090 1.91511 1.89292 1.35605 1.95329 1.20917 0.99229 0.96890 0.96670 1.20999 1.06055 0.92853 1.00191 1.18768 0.95773 0.83811 0.94024 1.86118 1.72919 1.24048 1.39139 1.23092 0.96422 1.02641 0.84793 0.93147 0.92227 0.91994 0.89703 0.91451 0.95368 0.94675 0.92614 0.88335 0.92833 0.82807 0.91715 0.92278 0.92112 0.82388 0.84597 0.84544 0.92630 0.88058 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.59 -12.14 2.46 -175.06 -0.43 -12.57 16 4 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 5 C -0.53 -15.30 9.94 -34.44 -0.34 -15.64 16 6 H 0.07 2.38 8.06 -52.48 -0.42 1.96 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 10 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.29 7.71 -10.99 -0.08 10.21 16 14 O -0.53 -13.01 15.78 5.56 0.09 -12.93 16 15 C 0.04 0.63 4.52 -4.97 -0.02 0.61 16 16 N -0.67 -9.60 5.23 -109.23 -0.57 -10.17 16 17 C 0.13 1.57 2.49 -68.87 -0.17 1.40 16 18 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 19 C -0.13 -1.49 9.39 37.15 0.35 -1.14 16 20 C -0.09 -0.99 5.00 -104.48 -0.52 -1.52 16 21 C -0.10 -1.24 8.85 -39.53 -0.35 -1.59 16 22 C 0.06 0.75 7.30 -39.42 -0.29 0.46 16 23 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 24 C -0.12 -1.08 10.02 -39.53 -0.40 -1.48 16 25 C -0.18 -1.50 9.04 -39.44 -0.36 -1.86 16 26 C 0.12 1.20 6.65 -39.24 -0.26 0.94 16 27 O -0.31 -2.71 9.64 -19.58 -0.19 -2.90 16 28 C 0.03 0.12 9.81 101.05 0.99 1.11 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.07 0.87 6.44 -51.93 -0.33 0.53 16 34 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 35 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 37 H 0.10 1.35 6.70 -51.93 -0.35 1.00 16 38 H 0.05 0.66 7.10 -51.93 -0.37 0.30 16 39 H 0.35 5.19 6.69 -39.29 -0.26 4.92 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 42 H 0.06 0.67 7.45 -51.93 -0.39 0.28 16 43 H 0.16 2.10 6.72 -52.48 -0.35 1.75 16 44 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 46 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 47 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -35.22 393.67 -7.45 -42.67 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.21 Total: 3.06 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.22 Total: -1.26 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.23 Total: -50.03 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.10 Total: -15.82 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.22 -7.45 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179917251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.778 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds