Wall clock time and date at job start Tue Mar 31 2020 21:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47390 * 2 1 4 4 C 1.46500 * 119.99910 * 270.00005 * 3 2 1 5 5 C 1.50698 * 109.47402 * 270.00114 * 4 3 2 6 6 H 1.08008 * 119.99447 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00345 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99791 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99872 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47146 * 90.00275 * 9 7 5 11 11 H 1.48499 * 109.47223 * 210.00207 * 9 7 5 12 12 H 1.48500 * 109.47218 * 330.00508 * 9 7 5 13 13 C 1.34773 * 119.99821 * 89.99940 * 3 2 1 14 14 O 1.21283 * 119.99533 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00196 * 0.02562 * 13 3 2 16 16 N 1.46905 * 109.47066 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 13 18 18 H 1.09000 * 109.46917 * 324.99892 * 17 16 15 19 19 C 1.52993 * 109.47269 * 84.99904 * 17 16 15 20 20 C 1.50692 * 109.46945 * 205.00102 * 17 16 15 21 21 C 1.38173 * 120.01805 * 339.72210 * 20 17 16 22 22 C 1.38433 * 120.03575 * 179.79380 * 21 20 17 23 23 F 1.35096 * 119.97241 * 180.23172 * 22 21 20 24 24 C 1.38478 * 120.05492 * 0.46125 * 22 21 20 25 25 C 1.38130 * 120.03246 * 359.79385 * 24 22 21 26 26 C 1.38684 * 120.01977 * 160.00040 * 20 17 16 27 27 O 1.35950 * 120.02722 * 359.94905 * 26 20 17 28 28 C 1.42898 * 117.00054 * 179.97438 * 27 26 20 29 29 H 1.09004 * 109.47076 * 300.00326 * 1 2 3 30 30 H 1.08997 * 109.46936 * 60.00002 * 1 2 3 31 31 H 1.08995 * 109.47191 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47563 * 239.99806 * 2 1 3 33 33 H 1.09007 * 109.47473 * 120.00041 * 2 1 3 34 34 H 1.09005 * 109.46820 * 30.00014 * 4 3 2 35 35 H 1.08995 * 109.47167 * 149.99982 * 4 3 2 36 36 H 0.97004 * 119.99413 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.47558 * 60.00201 * 15 13 3 38 38 H 1.08998 * 109.47216 * 299.99863 * 15 13 3 39 39 H 1.00901 * 110.99869 * 56.04737 * 16 15 13 40 40 H 1.09000 * 109.47161 * 60.00137 * 19 17 16 41 41 H 1.09006 * 109.47343 * 180.02562 * 19 17 16 42 42 H 1.09004 * 109.47587 * 300.00069 * 19 17 16 43 43 H 1.08006 * 119.98251 * 0.02562 * 21 20 17 44 44 H 1.08007 * 119.98439 * 179.76638 * 24 22 21 45 45 H 1.07996 * 120.01418 * 179.97438 * 25 24 22 46 46 H 1.09002 * 109.47081 * 60.00708 * 28 27 26 47 47 H 1.09003 * 109.47090 * 180.02562 * 28 27 26 48 48 H 1.08998 * 109.47291 * 300.00190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1840 -3.2569 9 14 3.0132 3.4359 -3.9287 10 1 3.1159 4.8561 -3.5069 11 1 3.4067 3.3136 -5.3554 12 1 1.6136 2.9694 -3.7596 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5889 17 6 2.0775 1.5456 4.8802 18 1 1.2180 0.8802 4.7984 19 6 3.3153 0.7345 5.2682 20 6 1.8080 2.5868 5.9357 21 6 2.2074 3.8942 5.7349 22 6 1.9563 4.8519 6.7025 23 9 2.3432 6.1307 6.5028 24 6 1.3130 4.4991 7.8769 25 6 0.9173 3.1917 8.0826 26 6 1.1642 2.2321 7.1117 27 8 0.7748 0.9452 7.3127 28 6 0.1175 0.6515 8.5471 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 5.7177 2.5745 -4.0828 37 1 2.6229 0.4187 2.5299 38 1 0.9445 1.0115 2.5302 39 1 1.7842 3.0649 3.5218 40 1 4.1748 1.3999 5.3500 41 1 3.1427 0.2439 6.2262 42 1 3.5103 -0.0187 4.5047 43 1 2.7125 4.1699 4.8209 44 1 1.1210 5.2464 8.6327 45 1 0.4161 2.9168 8.9989 46 1 -0.7914 1.2481 8.6257 47 1 -0.1388 -0.4075 8.5793 48 1 0.7815 0.8897 9.3780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179917251.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:43 Heat of formation + Delta-G solvation = -105.619682 kcal Electronic energy + Delta-G solvation = -29545.875885 eV Core-core repulsion = 25322.184787 eV Total energy + Delta-G solvation = -4223.691098 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.84142 -41.43022 -40.73548 -38.62337 -37.31996 -36.82825 -34.86263 -33.07550 -31.82275 -31.10931 -30.24010 -29.64993 -28.08468 -27.23216 -24.78730 -24.36071 -23.76769 -22.98655 -21.56036 -20.04909 -19.16877 -19.04009 -18.38294 -18.09347 -17.63260 -17.32781 -16.87849 -16.72290 -16.36116 -16.11354 -15.89336 -15.64864 -15.45768 -15.34795 -14.82070 -14.68374 -14.60057 -14.26634 -13.97170 -13.87212 -13.76744 -13.59124 -13.47095 -13.25956 -13.12908 -12.88655 -12.83569 -12.65739 -12.53087 -12.38307 -12.28042 -12.02761 -11.87855 -11.82975 -11.73713 -11.59401 -10.83102 -10.61753 -10.07707 -9.50870 -9.35783 -9.06810 -8.33754 -6.38412 0.09188 0.16601 1.31379 1.36232 1.44200 1.81722 2.22786 2.30829 2.31718 2.49079 3.00474 3.09793 3.25646 3.54007 3.69267 3.79077 4.01821 4.10880 4.15192 4.21238 4.25821 4.42393 4.44598 4.46150 4.47254 4.48755 4.64295 4.66314 4.74152 4.79574 4.82687 4.87737 4.92703 4.96342 5.00883 5.02177 5.09797 5.12866 5.17874 5.36593 5.39063 5.47698 5.66450 5.68281 5.96249 6.24400 6.25695 6.37387 6.63076 6.74943 7.22375 7.46339 8.83468 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.002661 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.190511 B =10520.554375 C =11602.660727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.027 0.973 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.496 3.504 14 O -0.583 6.583 15 C 0.059 3.941 16 N -0.687 5.687 17 C 0.141 3.859 18 H 0.074 0.926 19 C -0.129 4.129 20 C -0.103 4.103 21 C -0.117 4.117 22 C 0.038 3.962 23 F -0.154 7.154 24 C -0.109 4.109 25 C -0.173 4.173 26 C 0.127 3.873 27 O -0.321 6.321 28 C 0.014 3.986 29 H 0.060 0.940 30 H 0.045 0.955 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.268 0.732 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.346 0.654 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.133 0.867 44 H 0.161 0.839 45 H 0.173 0.827 46 H 0.068 0.932 47 H 0.118 0.882 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.196 -6.397 27.077 32.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.104 3.896 5 C -0.573 4.573 6 H 0.046 0.954 7 C -0.188 4.188 8 N -0.587 5.587 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.284 3.716 14 O -0.463 6.463 15 C -0.073 4.073 16 N -0.322 5.322 17 C 0.032 3.968 18 H 0.092 0.908 19 C -0.187 4.187 20 C -0.104 4.104 21 C -0.137 4.137 22 C 0.019 3.981 23 F -0.133 7.133 24 C -0.128 4.128 25 C -0.191 4.191 26 C 0.081 3.919 27 O -0.234 6.234 28 C -0.080 4.080 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.166 0.834 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.151 0.849 44 H 0.179 0.821 45 H 0.190 0.810 46 H 0.087 0.913 47 H 0.136 0.864 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.176 -6.075 26.788 31.877 hybrid contribution -0.331 1.174 -0.889 1.509 sum -16.507 -4.902 25.899 31.101 Atomic orbital electron populations 1.22152 0.93953 1.03664 1.01988 1.21780 0.95599 0.81100 1.03980 1.48058 1.64322 1.15238 1.05707 1.19262 0.94710 0.92933 0.82681 1.21576 0.97116 1.31973 1.06599 0.95429 1.25864 0.96728 0.97216 0.99015 1.70058 1.17432 1.46664 1.24503 0.85709 0.80482 0.78922 0.77781 1.20377 1.19903 1.16067 1.21241 0.77111 0.86708 0.86499 1.90639 1.47092 1.20720 1.87875 1.21844 1.02213 0.96239 0.87005 1.60284 1.63799 1.07243 1.00861 1.20239 0.98592 0.92737 0.85200 0.90848 1.21725 0.96251 0.99063 1.01672 1.19094 1.01845 0.93833 0.95611 1.20940 1.00695 0.92244 0.99776 1.17841 1.03963 0.78921 0.97351 1.91465 1.89707 1.36537 1.95555 1.21215 0.97664 0.98008 0.95883 1.21370 1.04964 0.91867 1.00894 1.18806 0.94857 0.84788 0.93497 1.86106 1.73020 1.23127 1.41180 1.23429 0.96928 1.04060 0.83578 0.92126 0.93543 0.88654 0.90976 0.88593 0.93383 0.96630 0.92304 0.86908 0.89386 0.83405 0.93594 0.90707 0.91990 0.84875 0.82125 0.81004 0.91318 0.86370 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 10.24 71.98 0.74 -2.70 16 2 C 0.10 2.83 5.93 86.38 0.51 3.34 16 3 N -0.60 -24.60 2.46 -826.15 -2.03 -26.63 16 4 C 0.23 11.29 4.23 85.63 0.36 11.66 16 5 C -0.53 -32.24 9.94 25.60 0.25 -31.99 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.58 5.47 84.65 0.46 1.04 16 8 N -0.95 -61.23 13.96 21.45 0.30 -60.94 16 9 Si 0.95 45.60 27.47 68.60 1.88 47.48 16 10 H -0.28 -13.51 7.11 99.48 0.71 -12.81 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 13 C 0.50 20.43 7.71 87.66 0.68 21.11 16 14 O -0.58 -30.20 15.78 -3.04 -0.05 -30.24 16 15 C 0.06 1.66 4.52 85.55 0.39 2.05 16 16 N -0.69 -19.93 5.23 -499.48 -2.61 -22.55 16 17 C 0.14 3.16 2.49 44.16 0.11 3.27 16 18 H 0.07 1.46 7.51 -2.39 -0.02 1.44 16 19 C -0.13 -2.79 9.39 71.98 0.68 -2.11 16 20 C -0.10 -2.26 5.00 -19.78 -0.10 -2.36 16 21 C -0.12 -2.98 8.85 22.30 0.20 -2.78 16 22 C 0.04 0.90 7.30 22.37 0.16 1.06 16 23 F -0.15 -4.14 17.27 44.97 0.78 -3.36 16 24 C -0.11 -1.78 10.02 22.30 0.22 -1.56 16 25 C -0.17 -2.30 9.04 22.36 0.20 -2.10 16 26 C 0.13 2.19 6.65 22.49 0.15 2.34 16 27 O -0.32 -4.57 9.64 -92.99 -0.90 -5.47 16 28 C 0.01 0.08 9.81 113.37 1.11 1.19 16 29 H 0.06 1.20 7.22 -2.38 -0.02 1.18 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 33 H 0.10 2.21 6.44 -2.38 -0.02 2.20 16 34 H 0.05 2.20 7.13 -2.38 -0.02 2.18 16 35 H 0.02 0.84 6.85 -2.39 -0.02 0.82 16 36 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 37 H 0.11 2.88 6.70 -2.39 -0.02 2.87 16 38 H 0.09 1.90 7.10 -2.39 -0.02 1.89 16 39 H 0.35 10.67 6.69 -89.69 -0.60 10.07 16 40 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.36 8.05 -2.38 -0.02 1.34 16 42 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 43 H 0.13 3.95 6.72 -2.91 -0.02 3.93 16 44 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.17 1.03 6.30 -2.91 -0.02 1.01 16 46 H 0.07 0.23 7.66 -2.39 -0.02 0.21 16 47 H 0.12 0.27 8.14 -2.39 -0.02 0.25 16 48 H 0.07 0.23 7.66 -2.39 -0.02 0.21 16 Total: -1.00 -82.60 393.67 3.82 -78.78 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.32 Total: 21.47 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.13 Total: 1.45 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -4.34 Total: -110.11 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.94 Total: -35.71 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.78 Total: -3.36 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.88 Total: 47.48 kcal Total: -82.60 3.82 -78.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179917251.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.843 kcal (2) G-P(sol) polarization free energy of solvation -82.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds