Wall clock time and date at job start Tue Mar 31 2020 21:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.46507 * 119.99951 * 269.99796 * 3 2 1 5 5 C 1.50688 * 109.47575 * 270.00380 * 4 3 2 6 6 H 1.08005 * 120.00256 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00548 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99492 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00624 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47032 * 89.99599 * 9 7 5 11 11 H 1.48493 * 109.47259 * 210.00131 * 9 7 5 12 12 H 1.48502 * 109.46709 * 330.00132 * 9 7 5 13 13 C 1.34769 * 120.00475 * 90.00202 * 3 2 1 14 14 O 1.21276 * 120.00448 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99631 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47448 * 180.02562 * 15 13 3 17 17 C 1.46893 * 111.00586 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47001 * 35.00047 * 17 16 15 19 19 C 1.53003 * 109.47339 * 275.00390 * 17 16 15 20 20 C 1.50699 * 109.47494 * 154.99897 * 17 16 15 21 21 C 1.38178 * 120.01240 * 25.00587 * 20 17 16 22 22 C 1.38433 * 120.02849 * 180.29718 * 21 20 17 23 23 F 1.35097 * 119.96527 * 179.70021 * 22 21 20 24 24 C 1.38482 * 120.05764 * 359.44546 * 22 21 20 25 25 C 1.38119 * 120.03239 * 0.55605 * 24 22 21 26 26 C 1.38685 * 120.01849 * 205.02610 * 20 17 16 27 27 O 1.35946 * 120.02896 * 359.95233 * 26 20 17 28 28 C 1.42901 * 116.99820 * 179.97438 * 27 26 20 29 29 H 1.08998 * 109.47153 * 60.00124 * 1 2 3 30 30 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47110 * 299.99745 * 1 2 3 32 32 H 1.09000 * 109.47315 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47600 * 120.00169 * 2 1 3 34 34 H 1.09007 * 109.46690 * 30.00031 * 4 3 2 35 35 H 1.08998 * 109.46753 * 149.99400 * 4 3 2 36 36 H 0.97003 * 119.99739 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47496 * 60.00506 * 15 13 3 38 38 H 1.09008 * 109.47171 * 299.99904 * 15 13 3 39 39 H 1.00906 * 110.99711 * 56.04279 * 16 15 13 40 40 H 1.08998 * 109.47218 * 59.99470 * 19 17 16 41 41 H 1.08997 * 109.47309 * 179.97438 * 19 17 16 42 42 H 1.09000 * 109.46794 * 299.99784 * 19 17 16 43 43 H 1.08002 * 119.98243 * 0.02562 * 21 20 17 44 44 H 1.08004 * 119.97990 * 180.24970 * 24 22 21 45 45 H 1.08004 * 120.01862 * 179.70258 * 25 24 22 46 46 H 1.09009 * 109.46895 * 179.97438 * 28 27 26 47 47 H 1.08993 * 109.47311 * 300.00246 * 28 27 26 48 48 H 1.08996 * 109.46831 * 60.00498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3428 1.2307 -1.0959 7 6 4.1494 2.3903 -2.8776 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0973 -3.4166 10 1 5.9775 0.8766 -4.2598 11 1 6.3927 3.2650 -4.1990 12 1 6.7736 1.9173 -2.2193 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3063 2.4722 16 7 2.3091 2.2065 3.5888 17 6 2.0746 1.5467 4.8801 18 1 2.3256 0.4891 4.7986 19 6 0.6017 1.6929 5.2675 20 6 2.9378 2.1879 5.9360 21 6 3.3674 3.4918 5.7794 22 6 4.1654 4.0791 6.7461 23 9 4.5897 5.3521 6.5888 24 6 4.5247 3.3648 7.8768 25 6 4.0967 2.0612 8.0358 26 6 3.3016 1.4695 7.0651 27 8 2.8792 0.1867 7.2206 28 6 3.2926 -0.4930 8.4077 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6756 3.5175 -4.4432 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 1.7841 3.0655 3.5214 40 1 -0.0226 1.2291 4.5038 41 1 0.4276 1.2029 6.2255 42 1 0.3507 2.7504 5.3490 43 1 3.0841 4.0515 4.9002 44 1 5.1440 3.8256 8.6322 45 1 4.3810 1.5027 8.9154 46 1 2.8874 -1.5049 8.4068 47 1 4.3812 -0.5370 8.4407 48 1 2.9241 0.0447 9.2812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179917264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:48 Heat of formation + Delta-G solvation = -87.775567 kcal Electronic energy + Delta-G solvation = -29520.432311 eV Core-core repulsion = 25297.514992 eV Total energy + Delta-G solvation = -4222.917319 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.82579 -40.56087 -39.12776 -37.73994 -36.33492 -35.17278 -32.81888 -31.93710 -30.17592 -30.05543 -29.32304 -27.58657 -27.44251 -25.57663 -23.95453 -22.99062 -22.50686 -21.97733 -20.88109 -18.66944 -18.13987 -17.29943 -17.12098 -16.46338 -16.19741 -16.11454 -15.89592 -15.45865 -14.96143 -14.87075 -14.71445 -14.58812 -14.31052 -14.10233 -13.73819 -13.34847 -13.28257 -13.13373 -12.92864 -12.66333 -12.55824 -12.41492 -12.12921 -12.10262 -11.95654 -11.68310 -11.55088 -11.36324 -11.16126 -11.13236 -10.89651 -10.82559 -10.70477 -10.48431 -10.08296 -9.58420 -9.15430 -8.87228 -8.39362 -8.37966 -8.17816 -7.60851 -6.00127 -4.04341 0.99429 1.07338 2.96935 3.33450 3.36804 3.40222 3.43824 3.50569 3.74617 4.17107 4.26992 4.42823 4.50311 4.65601 4.70643 4.80829 4.89970 5.02071 5.03472 5.10029 5.14468 5.17240 5.30643 5.34636 5.38776 5.44501 5.55157 5.62139 5.63990 5.71255 5.75497 5.80225 5.93582 5.98521 6.01676 6.04382 6.13589 6.24625 6.48465 6.58244 6.91277 7.07534 7.16335 7.40521 7.49083 7.60607 7.97002 8.28591 8.48183 8.95732 9.16807 9.60819 11.07968 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.002773 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.255675 B =10095.987627 C =11215.198776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.528 6.528 15 C 0.043 3.957 16 N -0.667 5.667 17 C 0.132 3.868 18 H 0.095 0.905 19 C -0.176 4.176 20 C -0.069 4.069 21 C -0.089 4.089 22 C 0.061 3.939 23 F -0.141 7.141 24 C -0.121 4.121 25 C -0.184 4.184 26 C 0.118 3.882 27 O -0.311 6.311 28 C 0.026 3.974 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.351 0.649 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.100 0.900 47 H 0.055 0.945 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 -8.370 25.240 27.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.290 3.710 14 O -0.404 6.404 15 C -0.089 4.089 16 N -0.299 5.299 17 C 0.021 3.979 18 H 0.113 0.887 19 C -0.235 4.235 20 C -0.070 4.070 21 C -0.108 4.108 22 C 0.042 3.958 23 F -0.119 7.119 24 C -0.139 4.139 25 C -0.202 4.202 26 C 0.073 3.927 27 O -0.225 6.225 28 C -0.069 4.069 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.171 0.829 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.168 0.832 44 H 0.152 0.848 45 H 0.153 0.847 46 H 0.118 0.882 47 H 0.074 0.926 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.467 -7.857 24.884 26.474 hybrid contribution 0.333 -0.022 -0.131 0.358 sum -4.134 -7.879 24.753 26.304 Atomic orbital electron populations 1.22220 0.96921 1.01330 1.02214 1.21396 0.93374 0.84374 1.02639 1.48247 1.64027 1.13210 1.07712 1.19241 0.96199 0.93601 0.78107 1.21449 0.96968 1.31738 1.06140 0.92468 1.24931 0.97817 0.94939 0.96442 1.69936 1.35682 1.33544 1.14369 0.86506 0.84801 0.77605 0.78586 1.20706 1.21117 1.19846 1.20172 0.78856 0.87132 0.84864 1.90674 1.44853 1.17984 1.86930 1.21922 1.00035 0.96655 0.90320 1.60194 1.62960 1.07071 0.99681 1.20236 0.92079 0.98422 0.87126 0.88669 1.22456 0.96226 1.02418 1.02380 1.18950 1.01031 0.93039 0.94022 1.20941 0.96603 0.94659 0.98554 1.17600 1.00926 0.80485 0.96773 1.91499 1.88510 1.36141 1.95794 1.20871 1.01332 0.94486 0.97260 1.20959 1.02758 0.96082 1.00439 1.18769 0.95329 0.84208 0.94434 1.86091 1.70925 1.23054 1.42381 1.23071 1.00410 0.97300 0.86098 0.92039 0.92229 0.93243 0.89975 0.91838 0.95127 0.93955 0.92784 0.88655 0.92800 0.82858 0.92097 0.91599 0.92197 0.83170 0.84771 0.84705 0.88171 0.92591 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 10.24 37.15 0.38 -1.82 16 2 C 0.11 1.68 5.93 -4.05 -0.02 1.66 16 3 N -0.60 -12.57 2.46 -175.07 -0.43 -13.00 16 4 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 5 C -0.52 -15.07 9.39 -34.45 -0.32 -15.40 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.41 16 13 C 0.50 10.42 7.71 -10.99 -0.08 10.34 16 14 O -0.53 -13.34 15.78 5.56 0.09 -13.25 16 15 C 0.04 0.63 4.52 -4.98 -0.02 0.61 16 16 N -0.67 -9.53 4.88 -109.22 -0.53 -10.06 16 17 C 0.13 1.51 2.52 -68.87 -0.17 1.34 16 18 H 0.10 1.10 7.35 -51.93 -0.38 0.71 16 19 C -0.18 -1.68 9.14 37.16 0.34 -1.34 16 20 C -0.07 -0.82 5.07 -104.48 -0.53 -1.35 16 21 C -0.09 -1.14 9.30 -39.53 -0.37 -1.51 16 22 C 0.06 0.77 7.30 -39.42 -0.29 0.48 16 23 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 24 C -0.12 -1.21 10.02 -39.54 -0.40 -1.61 16 25 C -0.18 -1.68 9.04 -39.44 -0.36 -2.03 16 26 C 0.12 1.25 6.66 -39.23 -0.26 0.99 16 27 O -0.31 -2.90 9.63 -19.57 -0.19 -3.09 16 28 C 0.03 0.14 9.81 101.05 0.99 1.13 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 7.22 -51.93 -0.37 0.23 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.06 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.10 1.32 7.32 -51.93 -0.38 0.94 16 38 H 0.05 0.67 6.48 -51.92 -0.34 0.33 16 39 H 0.35 5.08 7.60 -39.29 -0.30 4.78 16 40 H 0.06 0.55 7.45 -51.93 -0.39 0.16 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.15 2.04 6.89 -52.49 -0.36 1.68 16 44 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.14 0.85 6.30 -52.48 -0.33 0.52 16 46 H 0.10 0.37 8.14 -51.92 -0.42 -0.06 16 47 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 48 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 LS Contribution 398.21 15.07 6.00 6.00 Total: -1.00 -34.49 398.21 -7.83 -42.33 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.28 Total: 2.31 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -1.24 Total: -0.38 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.23 Total: -49.29 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.10 Total: -16.34 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.49 -7.83 -42.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179917264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.449 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds