Wall clock time and date at job start Tue Mar 31 2020 21:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47298 * 2 1 4 4 C 1.46507 * 119.99951 * 269.99796 * 3 2 1 5 5 C 1.50688 * 109.47575 * 270.00380 * 4 3 2 6 6 H 1.08005 * 120.00256 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00548 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99492 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00624 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47032 * 89.99599 * 9 7 5 11 11 H 1.48493 * 109.47259 * 210.00131 * 9 7 5 12 12 H 1.48502 * 109.46709 * 330.00132 * 9 7 5 13 13 C 1.34769 * 120.00475 * 90.00202 * 3 2 1 14 14 O 1.21276 * 120.00448 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99631 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.47448 * 180.02562 * 15 13 3 17 17 C 1.46893 * 111.00586 * 179.97438 * 16 15 13 18 18 H 1.09000 * 109.47001 * 35.00047 * 17 16 15 19 19 C 1.53003 * 109.47339 * 275.00390 * 17 16 15 20 20 C 1.50699 * 109.47494 * 154.99897 * 17 16 15 21 21 C 1.38178 * 120.01240 * 25.00587 * 20 17 16 22 22 C 1.38433 * 120.02849 * 180.29718 * 21 20 17 23 23 F 1.35097 * 119.96527 * 179.70021 * 22 21 20 24 24 C 1.38482 * 120.05764 * 359.44546 * 22 21 20 25 25 C 1.38119 * 120.03239 * 0.55605 * 24 22 21 26 26 C 1.38685 * 120.01849 * 205.02610 * 20 17 16 27 27 O 1.35946 * 120.02896 * 359.95233 * 26 20 17 28 28 C 1.42901 * 116.99820 * 179.97438 * 27 26 20 29 29 H 1.08998 * 109.47153 * 60.00124 * 1 2 3 30 30 H 1.08995 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47110 * 299.99745 * 1 2 3 32 32 H 1.09000 * 109.47315 * 239.99773 * 2 1 3 33 33 H 1.08999 * 109.47600 * 120.00169 * 2 1 3 34 34 H 1.09007 * 109.46690 * 30.00031 * 4 3 2 35 35 H 1.08998 * 109.46753 * 149.99400 * 4 3 2 36 36 H 0.97003 * 119.99739 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.47496 * 60.00506 * 15 13 3 38 38 H 1.09008 * 109.47171 * 299.99904 * 15 13 3 39 39 H 1.00906 * 110.99711 * 56.04279 * 16 15 13 40 40 H 1.08998 * 109.47218 * 59.99470 * 19 17 16 41 41 H 1.08997 * 109.47309 * 179.97438 * 19 17 16 42 42 H 1.09000 * 109.46794 * 299.99784 * 19 17 16 43 43 H 1.08002 * 119.98243 * 0.02562 * 21 20 17 44 44 H 1.08004 * 119.97990 * 180.24970 * 24 22 21 45 45 H 1.08004 * 120.01862 * 179.70258 * 25 24 22 46 46 H 1.09009 * 109.46895 * 179.97438 * 28 27 26 47 47 H 1.08993 * 109.47311 * 300.00246 * 28 27 26 48 48 H 1.08996 * 109.46831 * 60.00498 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6857 1.8349 -1.7039 6 1 4.3428 1.2307 -1.0959 7 6 4.1494 2.3903 -2.8776 8 7 3.3493 3.1265 -3.6176 9 14 5.9137 2.0973 -3.4166 10 1 5.9775 0.8766 -4.2598 11 1 6.3927 3.2650 -4.1990 12 1 6.7736 1.9173 -2.2193 13 6 2.2430 2.0165 1.1671 14 8 2.6469 3.1601 1.1671 15 6 1.9913 1.3063 2.4722 16 7 2.3091 2.2065 3.5888 17 6 2.0746 1.5467 4.8801 18 1 2.3256 0.4891 4.7986 19 6 0.6017 1.6929 5.2675 20 6 2.9378 2.1879 5.9360 21 6 3.3674 3.4918 5.7794 22 6 4.1654 4.0791 6.7461 23 9 4.5897 5.3521 6.5888 24 6 4.5247 3.3648 7.8768 25 6 4.0967 2.0612 8.0358 26 6 3.3016 1.4695 7.0651 27 8 2.8792 0.1867 7.2206 28 6 3.2926 -0.4930 8.4077 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6876 -2.0284 35 1 2.0955 3.1410 -1.1384 36 1 3.6756 3.5175 -4.4432 37 1 2.6212 0.4186 2.5302 38 1 0.9432 1.0126 2.5298 39 1 1.7841 3.0655 3.5214 40 1 -0.0226 1.2291 4.5038 41 1 0.4276 1.2029 6.2255 42 1 0.3507 2.7504 5.3490 43 1 3.0841 4.0515 4.9002 44 1 5.1440 3.8256 8.6322 45 1 4.3810 1.5027 8.9154 46 1 2.8874 -1.5049 8.4068 47 1 4.3812 -0.5370 8.4407 48 1 2.9241 0.0447 9.2812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179917264.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:47 Heat of formation + Delta-G solvation = -110.396735 kcal Electronic energy + Delta-G solvation = -29521.413239 eV Core-core repulsion = 25297.514992 eV Total energy + Delta-G solvation = -4223.898247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.80425 -41.34075 -40.67495 -38.56131 -37.35031 -36.79690 -34.91303 -33.00024 -31.57991 -30.98394 -30.20260 -29.22096 -28.01332 -27.03302 -24.98262 -24.52492 -23.85849 -22.99001 -21.76356 -20.04502 -19.04132 -18.62744 -18.27980 -18.03004 -17.56972 -17.33311 -16.80069 -16.61793 -16.32732 -16.13193 -15.68889 -15.60913 -15.42347 -15.31978 -14.88778 -14.62594 -14.33086 -14.25860 -13.98059 -13.85996 -13.67544 -13.57537 -13.32947 -13.18958 -13.10122 -12.95112 -12.82238 -12.67374 -12.59684 -12.47854 -12.21916 -12.15677 -11.84939 -11.79735 -11.70719 -11.62018 -10.63823 -10.54404 -9.98460 -9.48066 -9.34798 -9.00417 -8.22074 -6.36632 0.18153 0.23019 1.35177 1.38881 1.49161 1.88298 2.26140 2.36141 2.41523 2.56009 3.07110 3.16246 3.32992 3.64581 3.73931 3.84128 4.06280 4.12881 4.19815 4.22404 4.27226 4.34615 4.46665 4.48266 4.48988 4.49485 4.64629 4.67092 4.77044 4.83169 4.86009 4.94979 4.98151 5.01027 5.07064 5.14678 5.19036 5.22128 5.23235 5.28934 5.40832 5.59267 5.73626 5.86634 6.01263 6.08189 6.29845 6.40613 6.71849 6.85506 7.29699 7.54606 8.84820 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011972 B = 0.002773 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.255675 B =10095.987627 C =11215.198776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.264 3.736 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.493 3.507 14 O -0.587 6.587 15 C 0.061 3.939 16 N -0.686 5.686 17 C 0.138 3.862 18 H 0.101 0.899 19 C -0.168 4.168 20 C -0.085 4.085 21 C -0.106 4.106 22 C 0.033 3.967 23 F -0.156 7.156 24 C -0.114 4.114 25 C -0.176 4.176 26 C 0.122 3.878 27 O -0.322 6.322 28 C 0.015 3.985 29 H 0.036 0.964 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.022 0.978 35 H -0.006 1.006 36 H 0.267 0.733 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.346 0.654 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.129 0.871 44 H 0.158 0.842 45 H 0.170 0.830 46 H 0.119 0.881 47 H 0.064 0.936 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 -11.589 27.748 30.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.282 3.718 14 O -0.467 6.467 15 C -0.070 4.070 16 N -0.318 5.318 17 C 0.028 3.972 18 H 0.119 0.881 19 C -0.227 4.227 20 C -0.087 4.087 21 C -0.125 4.125 22 C 0.013 3.987 23 F -0.135 7.135 24 C -0.133 4.133 25 C -0.194 4.194 26 C 0.075 3.925 27 O -0.235 6.235 28 C -0.079 4.079 29 H 0.056 0.944 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.040 0.960 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.165 0.835 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.147 0.853 44 H 0.176 0.824 45 H 0.187 0.813 46 H 0.137 0.863 47 H 0.083 0.917 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.263 -11.144 27.416 29.899 hybrid contribution 0.231 0.920 -0.837 1.265 sum -4.032 -10.224 26.579 28.761 Atomic orbital electron populations 1.22146 0.94513 1.03503 1.01629 1.21747 0.95327 0.81336 1.03903 1.48275 1.64088 1.15147 1.06137 1.18658 0.95125 0.91450 0.80545 1.21723 0.97997 1.31877 1.06423 0.93046 1.25854 1.02362 0.94488 0.96482 1.70054 1.37758 1.34258 1.14829 0.85429 0.79057 0.78258 0.78154 1.18591 1.20644 1.19987 1.21287 0.77324 0.86694 0.86522 1.90641 1.47401 1.20767 1.87915 1.21809 1.02347 0.96036 0.86833 1.60160 1.63676 1.07197 1.00804 1.20249 0.93274 0.98117 0.85525 0.88092 1.22380 0.94842 1.02324 1.03155 1.19031 1.01728 0.92829 0.95082 1.20852 0.97827 0.95456 0.98396 1.17899 1.02238 0.80394 0.98126 1.91451 1.88820 1.37194 1.96012 1.21161 1.00811 0.94747 0.96572 1.21331 1.01424 0.95636 1.01026 1.18829 0.94836 0.84821 0.93988 1.86081 1.70931 1.22235 1.44256 1.23406 1.01281 0.98029 0.85205 0.94431 0.88570 0.92072 0.91123 0.88136 0.96045 0.98741 0.92442 0.86834 0.89365 0.83464 0.91135 0.90565 0.92778 0.85279 0.82438 0.81260 0.86329 0.91703 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 10.24 71.98 0.74 -3.08 16 2 C 0.10 2.98 5.93 86.38 0.51 3.49 16 3 N -0.60 -25.86 2.46 -826.19 -2.03 -27.89 16 4 C 0.26 14.59 5.16 85.63 0.44 15.03 16 5 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.97 46.26 29.54 68.60 2.03 48.28 16 10 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 13 C 0.49 20.81 7.71 87.66 0.68 21.49 16 14 O -0.59 -31.35 15.78 -3.02 -0.05 -31.40 16 15 C 0.06 1.72 4.52 85.56 0.39 2.11 16 16 N -0.69 -19.54 4.88 -499.46 -2.44 -21.97 16 17 C 0.14 2.98 2.52 44.17 0.11 3.09 16 18 H 0.10 2.06 7.35 -2.39 -0.02 2.04 16 19 C -0.17 -2.90 9.14 71.98 0.66 -2.24 16 20 C -0.09 -1.98 5.07 -19.77 -0.10 -2.08 16 21 C -0.11 -2.85 9.30 22.30 0.21 -2.64 16 22 C 0.03 0.83 7.30 22.37 0.16 0.99 16 23 F -0.16 -4.48 17.27 44.97 0.78 -3.70 16 24 C -0.11 -2.12 10.02 22.30 0.22 -1.89 16 25 C -0.18 -2.71 9.04 22.36 0.20 -2.50 16 26 C 0.12 2.29 6.66 22.49 0.15 2.44 16 27 O -0.32 -4.96 9.63 -92.94 -0.90 -5.86 16 28 C 0.01 0.10 9.81 113.37 1.11 1.21 16 29 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 1.32 7.22 -2.39 -0.02 1.31 16 32 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 33 H 0.10 2.29 6.44 -2.39 -0.02 2.27 16 34 H 0.02 1.20 8.07 -2.38 -0.02 1.18 16 35 H -0.01 -0.36 7.42 -2.39 -0.02 -0.37 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.11 2.81 7.32 -2.39 -0.02 2.79 16 38 H 0.09 1.89 6.48 -2.38 -0.02 1.88 16 39 H 0.35 10.44 7.60 -89.69 -0.68 9.76 16 40 H 0.07 1.07 7.45 -2.39 -0.02 1.05 16 41 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 43 H 0.13 3.89 6.89 -2.91 -0.02 3.87 16 44 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 45 H 0.17 1.37 6.30 -2.91 -0.02 1.35 16 46 H 0.12 0.39 8.14 -2.38 -0.02 0.37 16 47 H 0.06 0.35 7.66 -2.39 -0.02 0.33 16 48 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 Total: -1.00 -80.43 398.21 4.16 -76.28 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.29 Total: 19.16 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: 6.18 Total: 4.37 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -4.18 Total: -107.13 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.94 Total: -37.26 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -80.43 4.16 -76.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179917264.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.120 kcal (2) G-P(sol) polarization free energy of solvation -80.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds