Wall clock time and date at job start Tue Mar 31 2020 20:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46924 * 2 1 4 4 C 1.50703 * 109.46796 * 240.00763 * 2 1 3 5 5 O 1.21288 * 119.99669 * 251.38376 * 4 2 1 6 6 N 1.34774 * 120.00296 * 71.38917 * 4 2 1 7 7 C 1.46505 * 119.99950 * 4.63937 * 6 4 2 8 8 C 1.50698 * 109.46966 * 95.66883 * 7 6 4 9 9 H 1.08001 * 119.99998 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00018 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47454 * 89.99959 * 12 10 8 14 14 H 1.48506 * 109.47171 * 210.00159 * 12 10 8 15 15 H 1.48500 * 109.47183 * 329.99990 * 12 10 8 16 16 C 1.40027 * 120.00176 * 184.64236 * 6 4 2 17 17 C 1.38853 * 120.04150 * 352.54990 * 16 6 4 18 18 C 1.38122 * 119.95066 * 179.76589 * 17 16 6 19 19 C 1.38469 * 120.04604 * 0.51249 * 18 17 16 20 20 F 1.35103 * 119.95702 * 179.71863 * 19 18 17 21 21 C 1.38478 * 120.09059 * 359.74336 * 19 18 17 22 22 C 1.38112 * 120.04508 * 0.02562 * 21 19 18 23 23 N 1.46894 * 109.47774 * 120.00391 * 2 1 3 24 24 C 1.46900 * 110.99778 * 58.95335 * 23 2 1 25 25 C 1.46899 * 110.99912 * 295.00393 * 23 2 1 26 26 C 1.52999 * 109.47312 * 190.00064 * 25 23 2 27 27 H 1.09009 * 109.46549 * 304.99369 * 26 25 23 28 28 C 1.53000 * 109.47650 * 184.99999 * 26 25 23 29 29 O 1.42895 * 109.47569 * 64.99270 * 26 25 23 30 30 H 1.09000 * 109.48059 * 55.19630 * 1 2 3 31 31 H 1.08999 * 109.47213 * 175.20444 * 1 2 3 32 32 H 1.09009 * 109.47157 * 295.19252 * 1 2 3 33 33 H 1.09002 * 109.47022 * 215.66518 * 7 6 4 34 34 H 1.09000 * 109.46819 * 335.66843 * 7 6 4 35 35 H 0.96996 * 119.99768 * 179.97438 * 11 10 8 36 36 H 1.08000 * 120.02570 * 0.02562 * 17 16 6 37 37 H 1.08002 * 119.97590 * 180.22967 * 18 17 16 38 38 H 1.08003 * 119.97798 * 179.97438 * 21 19 18 39 39 H 1.08005 * 120.02417 * 179.97438 * 22 21 19 40 40 H 1.08992 * 109.47558 * 60.00151 * 24 23 2 41 41 H 1.09005 * 109.47064 * 180.02562 * 24 23 2 42 42 H 1.08999 * 109.47442 * 299.99866 * 24 23 2 43 43 H 1.09005 * 109.47131 * 309.99702 * 25 23 2 44 44 H 1.09002 * 109.47484 * 69.99464 * 25 23 2 45 45 H 1.09003 * 109.47146 * 59.99249 * 28 26 25 46 46 H 1.08997 * 109.47366 * 179.97438 * 28 26 25 47 47 H 1.09003 * 109.46802 * 299.99721 * 28 26 25 48 48 H 0.96704 * 114.00040 * 60.00456 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.5505 -1.8024 -1.1313 6 7 1.9056 -0.1320 -2.4414 7 6 1.3733 1.2285 -2.5513 8 6 2.5144 2.2107 -2.6163 9 1 3.5341 1.8569 -2.5790 10 6 2.2565 3.5609 -2.7234 11 7 1.0147 3.9917 -2.7683 12 14 3.6710 4.7784 -2.8032 13 1 4.0600 4.9931 -4.2202 14 1 3.2468 6.0699 -2.2052 15 1 4.8306 4.2403 -2.0477 16 6 2.2829 -0.8314 -3.5943 17 6 2.9292 -2.0555 -3.4845 18 6 3.2961 -2.7461 -4.6230 19 6 3.0294 -2.2136 -5.8731 20 9 3.3942 -2.8880 -6.9854 21 6 2.3897 -0.9905 -5.9847 22 6 2.0169 -0.2990 -4.8488 23 7 2.0198 -0.6925 1.1993 24 6 1.5285 -2.0761 1.2457 25 6 1.6488 0.0390 2.4180 26 6 2.3791 -0.5664 3.6184 27 1 2.1678 -1.6345 3.6714 28 6 1.8993 0.1126 4.9029 29 8 3.7862 -0.3659 3.4707 30 1 -0.3635 0.5865 -0.8438 31 1 -0.3633 -1.0240 -0.0859 32 1 -0.3634 0.4375 0.9300 33 1 0.7709 1.3110 -3.4560 34 1 0.7542 1.4478 -1.6813 35 1 0.8334 4.9416 -2.8432 36 1 3.1410 -2.4692 -2.5096 37 1 3.7955 -3.6999 -4.5380 38 1 2.1830 -0.5767 -6.9606 39 1 1.5184 0.6551 -4.9362 40 1 1.8763 -2.6150 0.3645 41 1 1.9055 -2.5657 2.1437 42 1 0.4386 -2.0744 1.2638 43 1 1.9298 1.0869 2.3125 44 1 0.5723 -0.0347 2.5726 45 1 0.8259 -0.0403 5.0156 46 1 2.4192 -0.3190 5.7581 47 1 2.1105 1.1806 4.8499 48 1 4.0476 0.5635 3.4168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245751878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:07 Heat of formation + Delta-G solvation = -70.304225 kcal Electronic energy + Delta-G solvation = -30683.749475 eV Core-core repulsion = 26461.589770 eV Total energy + Delta-G solvation = -4222.159705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.43069 -40.62559 -38.75347 -37.63951 -35.97312 -35.39461 -32.76570 -31.74580 -30.63774 -30.34455 -28.70242 -27.38467 -27.02200 -25.40294 -23.64982 -23.24324 -22.30541 -21.47045 -20.56727 -18.85826 -17.35715 -17.17094 -16.92811 -16.37008 -16.06907 -15.93667 -15.58356 -15.18081 -15.14476 -14.89391 -14.59420 -14.10383 -14.01335 -13.94238 -13.57946 -13.41786 -13.07668 -12.82445 -12.61503 -12.49076 -12.38060 -12.32253 -12.04386 -11.97969 -11.90995 -11.43670 -11.35110 -11.25876 -11.21106 -10.97866 -10.78547 -10.66771 -10.57153 -10.32231 -10.11824 -9.98221 -9.17682 -8.76044 -8.64487 -8.58266 -7.97704 -7.23355 -6.34168 -4.42492 1.58098 1.74383 3.04834 3.15759 3.23456 3.27719 3.36138 4.06346 4.17964 4.26532 4.53171 4.74413 4.77004 4.84507 4.99896 5.06741 5.09720 5.25132 5.27384 5.29343 5.31836 5.42404 5.55022 5.61089 5.71917 5.76057 5.78028 5.82998 5.83679 5.91686 5.98912 6.06669 6.07798 6.23363 6.34487 6.47158 6.59354 6.66607 6.73050 6.82553 6.96692 7.12979 7.19604 7.25990 7.59272 7.65863 7.77412 7.81304 7.99689 8.58370 8.71384 9.26159 10.72001 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.004436 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.492691 B = 6310.901673 C = 8715.366362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.069 3.931 3 H 0.123 0.877 4 C 0.531 3.469 5 O -0.525 6.525 6 N -0.532 5.532 7 C 0.219 3.781 8 C -0.541 4.541 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.167 3.833 17 C -0.153 4.153 18 C -0.137 4.137 19 C 0.049 3.951 20 F -0.153 7.153 21 C -0.134 4.134 22 C -0.118 4.118 23 N -0.508 5.508 24 C -0.001 4.001 25 C 0.020 3.980 26 C 0.107 3.893 27 H 0.097 0.903 28 C -0.185 4.185 29 O -0.551 6.551 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.058 0.942 35 H 0.267 0.733 36 H 0.189 0.811 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.109 0.891 41 H 0.060 0.940 42 H 0.018 0.982 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.529 -6.744 7.422 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.042 4.042 3 H 0.140 0.860 4 C 0.322 3.678 5 O -0.405 6.405 6 N -0.251 5.251 7 C 0.100 3.900 8 C -0.579 4.579 9 H 0.082 0.918 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.070 3.930 17 C -0.173 4.173 18 C -0.156 4.156 19 C 0.029 3.971 20 F -0.132 7.132 21 C -0.153 4.153 22 C -0.139 4.139 23 N -0.231 5.231 24 C -0.149 4.149 25 C -0.108 4.108 26 C 0.047 3.953 27 H 0.115 0.885 28 C -0.243 4.243 29 O -0.355 6.355 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.205 0.795 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.127 0.873 41 H 0.079 0.921 42 H 0.036 0.964 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -1.889 -7.753 7.504 10.954 hybrid contribution -0.276 1.639 -0.427 1.716 sum -2.165 -6.115 7.076 9.599 Atomic orbital electron populations 1.22504 0.95460 1.02692 1.03886 1.21620 0.94058 0.99961 0.88571 0.85968 1.20444 0.78016 0.85037 0.84332 1.90110 1.44092 1.21656 1.84658 1.45995 1.58263 1.17298 1.03519 1.19946 0.95596 0.74529 0.99888 1.21383 0.93098 0.90955 1.52462 0.91761 1.24892 0.95973 0.98214 0.94359 1.69904 1.18280 1.15594 1.48974 0.86478 0.82211 0.80159 0.78663 1.20318 1.20973 1.19569 1.18071 0.96118 0.92068 0.86722 1.22710 0.98310 0.94416 1.01845 1.21062 1.02679 1.01100 0.90788 1.17720 1.03839 0.93078 0.82419 1.91422 1.90285 1.79938 1.51556 1.20838 1.00999 0.94022 0.99477 1.20931 1.01930 1.01102 0.89904 1.61887 1.59029 1.02282 0.99937 1.22958 0.96777 0.90135 1.05003 1.22935 0.98120 0.98914 0.90831 1.21904 0.81482 1.00301 0.91587 0.88548 1.22500 1.01877 1.01391 0.98538 1.86608 1.21885 1.30947 1.96088 0.89897 0.92248 0.91597 0.93738 0.92454 0.92293 0.79525 0.85438 0.85182 0.83708 0.87288 0.92133 0.96391 0.90240 0.93934 0.91794 0.91758 0.92158 0.78093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.69 8.13 37.16 0.30 -2.39 16 2 C 0.07 1.15 1.91 -68.87 -0.13 1.01 16 3 H 0.12 2.23 7.31 -51.93 -0.38 1.85 16 4 C 0.53 10.11 6.76 -10.99 -0.07 10.04 16 5 O -0.53 -10.34 9.91 5.55 0.05 -10.28 16 6 N -0.53 -10.65 2.69 -114.71 -0.31 -10.96 16 7 C 0.22 4.73 4.18 -5.19 -0.02 4.71 16 8 C -0.54 -13.19 9.36 -34.44 -0.32 -13.51 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -22.72 13.29 55.43 0.74 -21.99 16 12 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C 0.17 3.27 6.46 -83.66 -0.54 2.73 16 17 C -0.15 -2.84 9.04 -39.40 -0.36 -3.20 16 18 C -0.14 -2.29 10.02 -39.54 -0.40 -2.69 16 19 C 0.05 0.84 7.30 -39.41 -0.29 0.55 16 20 F -0.15 -2.53 17.27 2.25 0.04 -2.49 16 21 C -0.13 -2.25 10.02 -39.54 -0.40 -2.65 16 22 C -0.12 -2.20 9.26 -39.40 -0.36 -2.56 16 23 N -0.51 -7.70 4.57 -236.29 -1.08 -8.78 16 24 C 0.00 -0.02 8.58 60.06 0.52 0.49 16 25 C 0.02 0.25 4.04 -3.83 -0.02 0.23 16 26 C 0.11 1.18 3.55 -26.73 -0.09 1.09 16 27 H 0.10 1.10 6.26 -51.92 -0.33 0.78 16 28 C -0.18 -1.57 9.53 37.16 0.35 -1.21 16 29 O -0.55 -7.13 13.29 -35.23 -0.47 -7.60 16 30 H 0.08 1.29 5.86 -51.93 -0.30 0.99 16 31 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 32 H 0.07 0.83 6.53 -51.92 -0.34 0.49 16 33 H 0.04 1.00 6.25 -51.93 -0.32 0.68 16 34 H 0.06 1.22 4.21 -51.93 -0.22 1.00 16 35 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 36 H 0.19 3.59 4.54 -56.15 -0.26 3.34 16 37 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.13 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.15 2.77 6.13 -52.48 -0.32 2.45 16 40 H 0.11 1.80 5.06 -51.93 -0.26 1.54 16 41 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 42 H 0.02 0.23 6.39 -51.93 -0.33 -0.10 16 43 H 0.08 0.96 8.00 -51.93 -0.42 0.54 16 44 H 0.04 0.47 6.83 -51.93 -0.35 0.12 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.37 3.71 9.05 45.56 0.41 4.12 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -27.21 377.41 -8.03 -35.24 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -5.75 Total: 12.15 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -1.93 Total: -5.73 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.65 Total: -41.72 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.41 Total: -17.88 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.21 -8.03 -35.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245751878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.064 kcal (2) G-P(sol) polarization free energy of solvation -27.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds