Wall clock time and date at job start Tue Mar 31 2020 20:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46924 * 2 1 4 4 C 1.50703 * 109.46796 * 240.00763 * 2 1 3 5 5 O 1.21288 * 119.99669 * 251.38376 * 4 2 1 6 6 N 1.34774 * 120.00296 * 71.38917 * 4 2 1 7 7 C 1.46505 * 119.99950 * 4.63937 * 6 4 2 8 8 C 1.50698 * 109.46966 * 95.66883 * 7 6 4 9 9 H 1.08001 * 119.99998 * 359.97438 * 8 7 6 10 10 C 1.37874 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00018 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00095 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47454 * 89.99959 * 12 10 8 14 14 H 1.48506 * 109.47171 * 210.00159 * 12 10 8 15 15 H 1.48500 * 109.47183 * 329.99990 * 12 10 8 16 16 C 1.40027 * 120.00176 * 184.64236 * 6 4 2 17 17 C 1.38853 * 120.04150 * 352.54990 * 16 6 4 18 18 C 1.38122 * 119.95066 * 179.76589 * 17 16 6 19 19 C 1.38469 * 120.04604 * 0.51249 * 18 17 16 20 20 F 1.35103 * 119.95702 * 179.71863 * 19 18 17 21 21 C 1.38478 * 120.09059 * 359.74336 * 19 18 17 22 22 C 1.38112 * 120.04508 * 0.02562 * 21 19 18 23 23 N 1.46894 * 109.47774 * 120.00391 * 2 1 3 24 24 C 1.46900 * 110.99778 * 58.95335 * 23 2 1 25 25 C 1.46899 * 110.99912 * 295.00393 * 23 2 1 26 26 C 1.52999 * 109.47312 * 190.00064 * 25 23 2 27 27 H 1.09009 * 109.46549 * 304.99369 * 26 25 23 28 28 C 1.53000 * 109.47650 * 184.99999 * 26 25 23 29 29 O 1.42895 * 109.47569 * 64.99270 * 26 25 23 30 30 H 1.09000 * 109.48059 * 55.19630 * 1 2 3 31 31 H 1.08999 * 109.47213 * 175.20444 * 1 2 3 32 32 H 1.09009 * 109.47157 * 295.19252 * 1 2 3 33 33 H 1.09002 * 109.47022 * 215.66518 * 7 6 4 34 34 H 1.09000 * 109.46819 * 335.66843 * 7 6 4 35 35 H 0.96996 * 119.99768 * 179.97438 * 11 10 8 36 36 H 1.08000 * 120.02570 * 0.02562 * 17 16 6 37 37 H 1.08002 * 119.97590 * 180.22967 * 18 17 16 38 38 H 1.08003 * 119.97798 * 179.97438 * 21 19 18 39 39 H 1.08005 * 120.02417 * 179.97438 * 22 21 19 40 40 H 1.08992 * 109.47558 * 60.00151 * 24 23 2 41 41 H 1.09005 * 109.47064 * 180.02562 * 24 23 2 42 42 H 1.08999 * 109.47442 * 299.99866 * 24 23 2 43 43 H 1.09005 * 109.47131 * 309.99702 * 25 23 2 44 44 H 1.09002 * 109.47484 * 69.99464 * 25 23 2 45 45 H 1.09003 * 109.47146 * 59.99249 * 28 26 25 46 46 H 1.08997 * 109.47366 * 179.97438 * 28 26 25 47 47 H 1.09003 * 109.46802 * 299.99721 * 28 26 25 48 48 H 0.96704 * 114.00040 * 60.00456 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.5505 -1.8024 -1.1313 6 7 1.9056 -0.1320 -2.4414 7 6 1.3733 1.2285 -2.5513 8 6 2.5144 2.2107 -2.6163 9 1 3.5341 1.8569 -2.5790 10 6 2.2565 3.5609 -2.7234 11 7 1.0147 3.9917 -2.7683 12 14 3.6710 4.7784 -2.8032 13 1 4.0600 4.9931 -4.2202 14 1 3.2468 6.0699 -2.2052 15 1 4.8306 4.2403 -2.0477 16 6 2.2829 -0.8314 -3.5943 17 6 2.9292 -2.0555 -3.4845 18 6 3.2961 -2.7461 -4.6230 19 6 3.0294 -2.2136 -5.8731 20 9 3.3942 -2.8880 -6.9854 21 6 2.3897 -0.9905 -5.9847 22 6 2.0169 -0.2990 -4.8488 23 7 2.0198 -0.6925 1.1993 24 6 1.5285 -2.0761 1.2457 25 6 1.6488 0.0390 2.4180 26 6 2.3791 -0.5664 3.6184 27 1 2.1678 -1.6345 3.6714 28 6 1.8993 0.1126 4.9029 29 8 3.7862 -0.3659 3.4707 30 1 -0.3635 0.5865 -0.8438 31 1 -0.3633 -1.0240 -0.0859 32 1 -0.3634 0.4375 0.9300 33 1 0.7709 1.3110 -3.4560 34 1 0.7542 1.4478 -1.6813 35 1 0.8334 4.9416 -2.8432 36 1 3.1410 -2.4692 -2.5096 37 1 3.7955 -3.6999 -4.5380 38 1 2.1830 -0.5767 -6.9606 39 1 1.5184 0.6551 -4.9362 40 1 1.8763 -2.6150 0.3645 41 1 1.9055 -2.5657 2.1437 42 1 0.4386 -2.0744 1.2638 43 1 1.9298 1.0869 2.3125 44 1 0.5723 -0.0347 2.5726 45 1 0.8259 -0.0403 5.0156 46 1 2.4192 -0.3190 5.7581 47 1 2.1105 1.1806 4.8499 48 1 4.0476 0.5635 3.4168 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245751878.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:06 Heat of formation + Delta-G solvation = -87.240440 kcal Electronic energy + Delta-G solvation = -30684.483885 eV Core-core repulsion = 26461.589770 eV Total energy + Delta-G solvation = -4222.894115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.77784 -42.07326 -39.97379 -38.84884 -37.11359 -36.98173 -34.61771 -32.81237 -32.04867 -31.42193 -30.16157 -29.06002 -28.03188 -26.58836 -25.32304 -24.52035 -23.73051 -22.68536 -21.70678 -20.27121 -18.79334 -18.75287 -18.55418 -17.77553 -17.23865 -16.93806 -16.73037 -16.56393 -16.54278 -16.35552 -16.21908 -15.40521 -15.30378 -15.12888 -14.73489 -14.56875 -14.50895 -14.33571 -14.03707 -13.78673 -13.69335 -13.52657 -13.26506 -13.20223 -12.98668 -12.94461 -12.77331 -12.60147 -12.47581 -12.37521 -12.24672 -12.11595 -11.94478 -11.84406 -11.54333 -10.91653 -10.80171 -10.63371 -10.06128 -10.00709 -9.13676 -8.75584 -8.22904 -6.37969 0.15067 0.33555 1.39447 1.43201 1.50306 1.60177 1.92521 2.38833 2.77724 2.92920 3.06610 3.36802 3.44370 3.67247 3.82135 3.91006 3.98045 4.03716 4.17606 4.23646 4.26735 4.33810 4.40271 4.43356 4.50021 4.59072 4.64721 4.66265 4.76877 4.80803 4.88224 4.92364 5.00189 5.08700 5.15246 5.19246 5.22944 5.26682 5.31204 5.34401 5.43408 5.64341 5.70048 5.95824 5.99189 6.16108 6.18102 6.42998 6.72359 6.96268 7.15117 7.33460 8.80489 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008300 B = 0.004436 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.492691 B = 6310.901673 C = 8715.366362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.076 3.924 3 H 0.103 0.897 4 C 0.522 3.478 5 O -0.534 6.534 6 N -0.538 5.538 7 C 0.233 3.767 8 C -0.546 4.546 9 H 0.045 0.955 10 C 0.035 3.965 11 N -0.911 5.911 12 Si 0.948 3.052 13 H -0.277 1.277 14 H -0.276 1.276 15 H -0.275 1.275 16 C 0.143 3.857 17 C -0.162 4.162 18 C -0.129 4.129 19 C 0.049 3.951 20 F -0.147 7.147 21 C -0.127 4.127 22 C -0.130 4.130 23 N -0.525 5.525 24 C 0.004 3.996 25 C 0.021 3.979 26 C 0.108 3.892 27 H 0.092 0.908 28 C -0.176 4.176 29 O -0.574 6.574 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.033 0.967 34 H 0.062 0.938 35 H 0.270 0.730 36 H 0.181 0.819 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.031 0.969 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -6.941 8.002 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.035 4.035 3 H 0.121 0.879 4 C 0.314 3.686 5 O -0.414 6.414 6 N -0.257 5.257 7 C 0.114 3.886 8 C -0.585 4.585 9 H 0.063 0.937 10 C -0.167 4.167 11 N -0.549 5.549 12 Si 0.774 3.226 13 H -0.203 1.203 14 H -0.201 1.201 15 H -0.200 1.200 16 C 0.047 3.953 17 C -0.182 4.182 18 C -0.148 4.148 19 C 0.029 3.971 20 F -0.126 7.126 21 C -0.146 4.146 22 C -0.150 4.150 23 N -0.248 5.248 24 C -0.143 4.143 25 C -0.107 4.107 26 C 0.049 3.951 27 H 0.110 0.890 28 C -0.234 4.234 29 O -0.381 6.381 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.197 0.803 37 H 0.171 0.829 38 H 0.172 0.828 39 H 0.152 0.848 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -2.031 -7.955 8.088 11.525 hybrid contribution -0.192 1.622 -0.644 1.755 sum -2.223 -6.334 7.444 10.024 Atomic orbital electron populations 1.22415 0.93777 1.02968 1.04376 1.21476 0.95240 0.98526 0.88290 0.87948 1.20978 0.77778 0.85149 0.84715 1.90120 1.44384 1.22052 1.84874 1.45971 1.58671 1.16774 1.04251 1.19642 0.94583 0.75006 0.99355 1.21465 0.92875 0.91818 1.52311 0.93714 1.25433 0.97684 0.99396 0.94189 1.69959 1.19362 1.15975 1.49626 0.85708 0.79838 0.78703 0.78402 1.20313 1.20127 1.20027 1.18375 0.97083 0.92794 0.86999 1.22650 0.98908 0.94348 1.02248 1.21287 1.01713 1.01712 0.90117 1.17757 1.03594 0.93073 0.82634 1.91440 1.90181 1.79774 1.51212 1.21056 0.99825 0.93746 0.99944 1.20902 1.02751 1.01079 0.90305 1.61871 1.59753 1.02824 1.00386 1.22840 0.97562 0.89535 1.04343 1.23024 0.99243 0.98571 0.89825 1.21956 0.80592 1.00307 0.92239 0.88993 1.22410 1.02610 1.01466 0.96948 1.86567 1.23139 1.32162 1.96233 0.91345 0.91643 0.89396 0.94930 0.92039 0.92067 0.80277 0.82901 0.82757 0.84782 0.89717 0.90954 0.95010 0.90343 0.92314 0.90488 0.91473 0.91513 0.76906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.96 8.13 71.98 0.59 -4.38 16 2 C 0.08 2.53 1.91 44.17 0.08 2.62 16 3 H 0.10 3.82 7.31 -2.39 -0.02 3.80 16 4 C 0.52 20.30 6.76 87.66 0.59 20.90 16 5 O -0.53 -21.43 9.91 -3.05 -0.03 -21.46 16 6 N -0.54 -22.10 2.69 -635.23 -1.71 -23.81 16 7 C 0.23 10.36 4.18 85.63 0.36 10.72 16 8 C -0.55 -27.18 9.36 25.60 0.24 -26.94 16 9 H 0.04 2.37 7.81 -2.91 -0.02 2.34 16 10 C 0.03 1.72 5.46 84.65 0.46 2.18 16 11 N -0.91 -46.60 13.29 21.45 0.28 -46.31 16 12 Si 0.95 40.48 29.54 68.60 2.03 42.51 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 14 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 16 C 0.14 5.73 6.46 38.13 0.25 5.97 16 17 C -0.16 -6.01 9.04 22.39 0.20 -5.81 16 18 C -0.13 -4.16 10.02 22.30 0.22 -3.94 16 19 C 0.05 1.60 7.30 22.38 0.16 1.76 16 20 F -0.15 -4.53 17.27 44.97 0.78 -3.75 16 21 C -0.13 -4.11 10.02 22.30 0.22 -3.89 16 22 C -0.13 -4.87 9.26 22.39 0.21 -4.66 16 23 N -0.52 -15.59 4.57 -901.49 -4.12 -19.71 16 24 C 0.00 0.12 8.58 127.69 1.10 1.22 16 25 C 0.02 0.48 4.04 86.30 0.35 0.83 16 26 C 0.11 2.22 3.55 30.59 0.11 2.33 16 27 H 0.09 1.96 6.26 -2.38 -0.01 1.94 16 28 C -0.18 -2.58 9.53 71.98 0.69 -1.90 16 29 O -0.57 -14.39 13.29 -148.98 -1.98 -16.37 16 30 H 0.07 2.13 5.86 -2.39 -0.01 2.12 16 31 H 0.06 1.75 6.66 -2.39 -0.02 1.73 16 32 H 0.09 2.06 6.53 -2.38 -0.02 2.04 16 33 H 0.03 1.52 6.25 -2.39 -0.01 1.51 16 34 H 0.06 2.68 4.21 -2.39 -0.01 2.67 16 35 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 36 H 0.18 6.99 4.54 -60.90 -0.28 6.71 16 37 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.13 5.28 6.13 -2.91 -0.02 5.26 16 40 H 0.08 2.80 5.06 -2.39 -0.01 2.79 16 41 H 0.07 1.81 6.21 -2.38 -0.01 1.79 16 42 H 0.03 0.78 6.39 -2.39 -0.02 0.76 16 43 H 0.08 1.80 8.00 -2.38 -0.02 1.78 16 44 H 0.06 1.15 6.83 -2.39 -0.02 1.14 16 45 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.38 7.38 9.05 -74.05 -0.67 6.71 16 Total: -1.00 -57.55 377.41 1.15 -56.40 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.08 Total: 35.51 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 5.83 Total: -2.99 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -5.54 Total: -89.83 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -2.01 Total: -37.84 kcal Atomic # 9 Polarization: -4.53 SS G_CDS: 0.78 Total: -3.75 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -57.55 1.15 -56.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245751878.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.845 kcal (2) G-P(sol) polarization free energy of solvation -57.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds