Wall clock time and date at job start Tue Mar 31 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35767 * 116.99760 * 2 1 4 4 C 1.38924 * 119.91876 * 359.71941 * 3 2 1 5 5 C 1.37735 * 120.11639 * 180.28081 * 4 3 2 6 6 C 1.39715 * 119.95301 * 0.02562 * 5 4 3 7 7 C 1.47602 * 120.08458 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00675 * 131.61782 * 7 6 5 9 9 N 1.34780 * 119.99399 * 311.61244 * 7 6 5 10 10 C 1.46494 * 120.00168 * 5.01219 * 9 7 6 11 11 C 1.50701 * 109.47496 * 95.73236 * 10 9 7 12 12 H 1.08006 * 119.99649 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99961 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00244 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99814 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46734 * 59.99952 * 15 13 11 17 17 H 1.48494 * 109.46980 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47107 * 300.00282 * 15 13 11 19 19 C 1.46501 * 119.99611 * 185.00346 * 9 7 6 20 20 C 1.53005 * 109.46941 * 90.00444 * 19 9 7 21 21 C 1.53007 * 109.46969 * 179.97438 * 20 19 9 22 22 N 1.46897 * 109.46871 * 179.97438 * 21 20 19 23 23 C 1.46901 * 110.99963 * 169.99894 * 22 21 20 24 24 C 1.46901 * 111.00136 * 293.95807 * 22 21 20 25 25 C 1.39742 * 119.83634 * 359.97438 * 6 5 4 26 26 C 1.37897 * 119.88494 * 0.02562 * 25 6 5 27 27 F 1.35099 * 119.97704 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.47693 * 300.00422 * 1 2 3 29 29 H 1.08999 * 109.47540 * 60.00503 * 1 2 3 30 30 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94156 * 0.25567 * 4 3 2 32 32 H 1.08004 * 120.02360 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.47056 * 215.72772 * 10 9 7 34 34 H 1.08994 * 109.46986 * 335.72495 * 10 9 7 35 35 H 0.97003 * 120.00468 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.47286 * 210.00636 * 19 9 7 37 37 H 1.08995 * 109.47508 * 330.00546 * 19 9 7 38 38 H 1.08990 * 109.47079 * 299.99782 * 20 19 9 39 39 H 1.09004 * 109.46789 * 60.00317 * 20 19 9 40 40 H 1.09000 * 109.46838 * 300.00228 * 21 20 19 41 41 H 1.08995 * 109.46707 * 60.00447 * 21 20 19 42 42 H 1.09005 * 109.46640 * 60.00425 * 23 22 21 43 43 H 1.09001 * 109.46951 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47310 * 300.00488 * 23 22 21 45 45 H 1.08994 * 109.47308 * 60.00184 * 24 22 21 46 46 H 1.09003 * 109.46787 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.47123 * 299.99610 * 24 22 21 48 48 H 1.08008 * 120.05495 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2869 2.3737 -0.0059 5 6 1.9080 3.6031 -0.0118 6 6 3.3030 3.6799 -0.0123 7 6 3.9715 4.9958 -0.0180 8 8 4.8705 5.2246 0.7680 9 7 3.5855 5.9439 -0.8947 10 6 2.4319 5.7093 -1.7666 11 6 1.2002 6.3150 -1.1443 12 1 1.2698 6.8236 -0.1940 13 6 -0.0153 6.2200 -1.7880 14 7 -0.0999 5.6011 -2.9453 15 14 -1.5421 6.9702 -1.0163 16 1 -1.3415 8.4313 -0.8421 17 1 -2.7111 6.7335 -1.9008 18 1 -1.7869 6.3429 0.3073 19 6 4.3194 7.2093 -0.9756 20 6 5.4459 7.0806 -2.0029 21 6 6.2121 8.4024 -2.0878 22 7 7.2941 8.2786 -3.0736 23 6 7.8998 9.5865 -3.3574 24 6 8.3079 7.3151 -2.6245 25 6 4.0639 2.5078 -0.0064 26 6 3.4351 1.2805 -0.0005 27 9 4.1689 0.1462 0.0047 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2086 2.3145 -0.0063 32 1 1.3170 4.5071 -0.0159 33 1 2.6114 6.1691 -2.7385 34 1 2.2848 4.6368 -1.8938 35 1 -0.9552 5.5339 -3.3981 36 1 3.6394 8.0050 -1.2797 37 1 4.7430 7.4467 0.0003 38 1 6.1259 6.2850 -1.6987 39 1 5.0223 6.8433 -2.9788 40 1 5.5318 9.1977 -2.3922 41 1 6.6356 8.6400 -1.1120 42 1 8.3107 10.0037 -2.4380 43 1 8.6974 9.4661 -4.0905 44 1 7.1405 10.2602 -3.7544 45 1 7.8453 6.3376 -2.4889 46 1 9.0974 7.2432 -3.3727 47 1 8.7337 7.6500 -1.6787 48 1 5.1425 2.5631 -0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263933041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:10 Heat of formation + Delta-G solvation = -84.743302 kcal Electronic energy + Delta-G solvation = -29985.635447 eV Core-core repulsion = 25762.849617 eV Total energy + Delta-G solvation = -4222.785831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.48317 -40.06064 -39.11164 -37.64856 -36.67542 -35.29662 -33.06152 -31.71048 -30.42002 -29.92988 -27.66077 -27.55298 -27.33403 -25.88598 -23.42528 -23.05338 -22.38769 -21.88633 -20.64314 -19.04348 -17.98195 -17.14542 -16.66010 -16.57427 -15.97375 -15.77499 -15.66170 -15.29941 -15.00941 -14.85250 -14.75713 -14.53662 -14.50565 -14.04981 -13.89276 -13.78927 -13.18744 -12.65601 -12.43361 -12.37549 -12.28337 -12.13215 -12.03662 -11.79665 -11.73624 -11.63675 -11.46029 -11.33513 -11.24641 -10.98961 -10.94105 -10.83687 -10.57104 -10.29439 -10.14550 -9.86001 -9.24444 -8.71047 -8.60718 -8.35128 -7.89363 -7.77490 -6.31090 -4.39989 1.29579 1.52596 3.13915 3.20707 3.21400 3.24673 3.27143 3.67224 4.02744 4.07506 4.22788 4.52186 4.94938 5.00168 5.03463 5.12351 5.15074 5.21175 5.26392 5.28772 5.37105 5.42222 5.52483 5.55259 5.62737 5.63533 5.68470 5.73834 5.77287 5.78722 5.87826 5.99128 6.12146 6.16639 6.33565 6.47604 6.58539 6.64324 6.72276 6.78104 6.96083 7.03306 7.05913 7.14703 7.43908 7.46803 7.62992 7.92330 8.23063 8.65613 8.88433 9.26985 10.74091 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008244 B = 0.004108 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.676540 B = 6814.261257 C = 9539.122245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.108 3.892 4 C -0.190 4.190 5 C -0.035 4.035 6 C -0.133 4.133 7 C 0.563 3.437 8 O -0.567 6.567 9 N -0.585 5.585 10 C 0.229 3.771 11 C -0.546 4.546 12 H 0.064 0.936 13 C 0.071 3.929 14 N -0.880 5.880 15 Si 0.892 3.108 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.122 3.878 20 C -0.129 4.129 21 C 0.059 3.941 22 N -0.548 5.548 23 C 0.025 3.975 24 C 0.022 3.978 25 C -0.073 4.073 26 C 0.046 3.954 27 F -0.138 7.138 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.139 0.861 32 H 0.179 0.821 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.022 0.978 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.024 0.976 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.560 -1.834 1.541 6.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.062 3.938 4 C -0.208 4.208 5 C -0.053 4.053 6 C -0.136 4.136 7 C 0.351 3.649 8 O -0.448 6.448 9 N -0.314 5.314 10 C 0.109 3.891 11 C -0.584 4.584 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.517 5.517 15 Si 0.719 3.281 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.002 4.002 20 C -0.168 4.168 21 C -0.069 4.069 22 N -0.272 5.272 23 C -0.123 4.123 24 C -0.126 4.126 25 C -0.093 4.093 26 C 0.026 3.974 27 F -0.117 7.117 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.195 0.805 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.042 0.958 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.775 -2.163 1.315 6.305 hybrid contribution -0.796 0.622 0.884 1.342 sum 4.979 -1.541 2.199 5.657 Atomic orbital electron populations 1.23115 0.78013 1.03828 1.01997 1.86035 1.21723 1.26266 1.88561 1.19227 0.90705 0.85539 0.98364 1.21137 1.00424 0.91114 1.08171 1.22349 0.93699 0.99990 0.89264 1.19625 0.94029 0.93037 1.06888 1.18072 0.82218 0.84059 0.80566 1.90698 1.32441 1.81319 1.40371 1.48095 1.30933 1.14784 1.37601 1.19670 0.81400 0.98500 0.89527 1.21428 0.92501 1.37515 1.06969 0.91778 1.24947 0.98984 0.94805 0.94686 1.69920 1.26217 1.40953 1.14573 0.86641 0.82026 0.80153 0.79261 1.19957 1.21048 1.19898 1.21226 0.93315 0.86605 0.99035 1.21950 0.97410 0.96730 1.00739 1.22075 0.93119 0.98700 0.93025 1.61964 1.11349 1.09184 1.44690 1.22369 0.99549 0.90626 0.99781 1.22428 0.94698 0.97099 0.98395 1.20850 1.00676 0.89216 0.98510 1.16595 0.85809 0.82556 1.12394 1.91458 1.76700 1.48761 1.94777 0.92394 0.92019 0.88289 0.84294 0.80451 0.94502 0.93447 0.92241 0.90026 0.90965 0.91957 0.90754 0.90552 0.94806 0.95900 0.91626 0.91347 0.90855 0.91759 0.95773 0.84064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.31 -4.82 10.35 -19.01 -0.20 -5.01 16 3 C 0.11 1.83 6.70 -38.98 -0.26 1.57 16 4 C -0.19 -3.22 9.01 -39.51 -0.36 -3.57 16 5 C -0.04 -0.67 7.51 -39.21 -0.29 -0.97 16 6 C -0.13 -2.58 4.95 -104.96 -0.52 -3.10 16 7 C 0.56 11.72 7.23 -12.44 -0.09 11.63 16 8 O -0.57 -12.73 16.57 5.29 0.09 -12.64 16 9 N -0.59 -11.85 2.46 -176.26 -0.43 -12.28 16 10 C 0.23 5.10 4.66 -5.20 -0.02 5.08 16 11 C -0.55 -12.88 6.84 -34.44 -0.24 -13.12 16 12 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.88 -22.39 13.29 55.43 0.74 -21.66 16 15 Si 0.89 18.90 29.54 -169.99 -5.02 13.88 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 19 C 0.12 2.15 5.46 -4.04 -0.02 2.13 16 20 C -0.13 -2.03 5.46 -26.73 -0.15 -2.18 16 21 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 22 N -0.55 -7.06 5.02 -251.26 -1.26 -8.32 16 23 C 0.03 0.26 9.57 60.07 0.57 0.83 16 24 C 0.02 0.26 9.32 60.07 0.56 0.82 16 25 C -0.07 -1.30 9.69 -39.14 -0.38 -1.68 16 26 C 0.05 0.81 7.30 -39.36 -0.29 0.53 16 27 F -0.14 -2.41 17.10 2.25 0.04 -2.38 16 28 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 29 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.14 2.06 6.27 -52.49 -0.33 1.73 16 32 H 0.18 3.72 4.74 -52.48 -0.25 3.47 16 33 H 0.04 0.88 8.11 -51.92 -0.42 0.46 16 34 H 0.05 1.11 5.41 -51.93 -0.28 0.83 16 35 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 36 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 37 H 0.07 1.29 7.36 -51.93 -0.38 0.90 16 38 H 0.06 1.03 6.55 -51.93 -0.34 0.69 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 0.97 8.06 -51.93 -0.42 0.56 16 41 H 0.03 0.45 8.12 -51.93 -0.42 0.02 16 42 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 44 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 45 H 0.07 0.93 6.47 -51.93 -0.34 0.59 16 46 H 0.06 0.66 8.12 -51.93 -0.42 0.23 16 47 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 LS Contribution 395.16 15.07 5.95 5.95 Total: -1.00 -27.76 395.16 -8.02 -35.77 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.32 Total: 5.06 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -0.61 Total: 1.62 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.96 Total: -42.26 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.11 Total: -17.66 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -27.76 -8.02 -35.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263933041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.971 kcal (2) G-P(sol) polarization free energy of solvation -27.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds