Wall clock time and date at job start Tue Mar 31 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35767 * 116.99760 * 2 1 4 4 C 1.38924 * 119.91876 * 359.71941 * 3 2 1 5 5 C 1.37735 * 120.11639 * 180.28081 * 4 3 2 6 6 C 1.39715 * 119.95301 * 0.02562 * 5 4 3 7 7 C 1.47602 * 120.08458 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00675 * 131.61782 * 7 6 5 9 9 N 1.34780 * 119.99399 * 311.61244 * 7 6 5 10 10 C 1.46494 * 120.00168 * 5.01219 * 9 7 6 11 11 C 1.50701 * 109.47496 * 95.73236 * 10 9 7 12 12 H 1.08006 * 119.99649 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99961 * 179.97438 * 11 10 9 14 14 N 1.31507 * 120.00244 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99814 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46734 * 59.99952 * 15 13 11 17 17 H 1.48494 * 109.46980 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47107 * 300.00282 * 15 13 11 19 19 C 1.46501 * 119.99611 * 185.00346 * 9 7 6 20 20 C 1.53005 * 109.46941 * 90.00444 * 19 9 7 21 21 C 1.53007 * 109.46969 * 179.97438 * 20 19 9 22 22 N 1.46897 * 109.46871 * 179.97438 * 21 20 19 23 23 C 1.46901 * 110.99963 * 169.99894 * 22 21 20 24 24 C 1.46901 * 111.00136 * 293.95807 * 22 21 20 25 25 C 1.39742 * 119.83634 * 359.97438 * 6 5 4 26 26 C 1.37897 * 119.88494 * 0.02562 * 25 6 5 27 27 F 1.35099 * 119.97704 * 179.97438 * 26 25 6 28 28 H 1.09002 * 109.47693 * 300.00422 * 1 2 3 29 29 H 1.08999 * 109.47540 * 60.00503 * 1 2 3 30 30 H 1.09006 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.94156 * 0.25567 * 4 3 2 32 32 H 1.08004 * 120.02360 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.47056 * 215.72772 * 10 9 7 34 34 H 1.08994 * 109.46986 * 335.72495 * 10 9 7 35 35 H 0.97003 * 120.00468 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.47286 * 210.00636 * 19 9 7 37 37 H 1.08995 * 109.47508 * 330.00546 * 19 9 7 38 38 H 1.08990 * 109.47079 * 299.99782 * 20 19 9 39 39 H 1.09004 * 109.46789 * 60.00317 * 20 19 9 40 40 H 1.09000 * 109.46838 * 300.00228 * 21 20 19 41 41 H 1.08995 * 109.46707 * 60.00447 * 21 20 19 42 42 H 1.09005 * 109.46640 * 60.00425 * 23 22 21 43 43 H 1.09001 * 109.46951 * 180.02562 * 23 22 21 44 44 H 1.09001 * 109.47310 * 300.00488 * 23 22 21 45 45 H 1.08994 * 109.47308 * 60.00184 * 24 22 21 46 46 H 1.09003 * 109.46787 * 180.02562 * 24 22 21 47 47 H 1.09000 * 109.47123 * 299.99610 * 24 22 21 48 48 H 1.08008 * 120.05495 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2869 2.3737 -0.0059 5 6 1.9080 3.6031 -0.0118 6 6 3.3030 3.6799 -0.0123 7 6 3.9715 4.9958 -0.0180 8 8 4.8705 5.2246 0.7680 9 7 3.5855 5.9439 -0.8947 10 6 2.4319 5.7093 -1.7666 11 6 1.2002 6.3150 -1.1443 12 1 1.2698 6.8236 -0.1940 13 6 -0.0153 6.2200 -1.7880 14 7 -0.0999 5.6011 -2.9453 15 14 -1.5421 6.9702 -1.0163 16 1 -1.3415 8.4313 -0.8421 17 1 -2.7111 6.7335 -1.9008 18 1 -1.7869 6.3429 0.3073 19 6 4.3194 7.2093 -0.9756 20 6 5.4459 7.0806 -2.0029 21 6 6.2121 8.4024 -2.0878 22 7 7.2941 8.2786 -3.0736 23 6 7.8998 9.5865 -3.3574 24 6 8.3079 7.3151 -2.6245 25 6 4.0639 2.5078 -0.0064 26 6 3.4351 1.2805 -0.0005 27 9 4.1689 0.1462 0.0047 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2086 2.3145 -0.0063 32 1 1.3170 4.5071 -0.0159 33 1 2.6114 6.1691 -2.7385 34 1 2.2848 4.6368 -1.8938 35 1 -0.9552 5.5339 -3.3981 36 1 3.6394 8.0050 -1.2797 37 1 4.7430 7.4467 0.0003 38 1 6.1259 6.2850 -1.6987 39 1 5.0223 6.8433 -2.9788 40 1 5.5318 9.1977 -2.3922 41 1 6.6356 8.6400 -1.1120 42 1 8.3107 10.0037 -2.4380 43 1 8.6974 9.4661 -4.0905 44 1 7.1405 10.2602 -3.7544 45 1 7.8453 6.3376 -2.4889 46 1 9.0974 7.2432 -3.3727 47 1 8.7337 7.6500 -1.6787 48 1 5.1425 2.5631 -0.0064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263933041.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:10 Heat of formation + Delta-G solvation = -100.087094 kcal Electronic energy + Delta-G solvation = -29986.300804 eV Core-core repulsion = 25762.849617 eV Total energy + Delta-G solvation = -4223.451187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.87524 -41.52094 -40.51707 -38.72526 -38.03777 -36.94564 -34.78490 -33.16553 -31.83091 -31.25910 -29.27649 -28.52508 -28.46681 -27.14307 -25.04813 -24.49829 -23.78517 -23.18908 -21.79177 -20.57789 -19.26495 -18.78184 -18.32820 -18.04582 -17.28792 -17.16198 -17.05105 -16.52677 -16.28610 -16.13895 -16.08643 -15.99358 -15.77090 -15.36943 -15.22374 -14.99822 -14.62947 -14.31060 -13.93469 -13.77866 -13.42711 -13.38720 -13.25545 -13.13543 -12.90162 -12.86274 -12.82215 -12.62812 -12.55659 -12.42061 -12.34355 -12.12032 -12.06445 -11.87045 -11.68059 -11.51063 -10.91063 -10.55979 -10.02162 -9.52267 -9.32146 -9.23263 -8.17182 -6.31736 -0.13260 0.10384 1.46148 1.49258 1.55078 1.67223 2.07622 2.17947 2.42680 2.60610 3.02303 3.11051 3.15807 3.55769 3.73815 3.93896 3.98446 4.11740 4.17085 4.22660 4.36366 4.38623 4.40022 4.42311 4.44052 4.49710 4.62224 4.66271 4.70369 4.72984 4.77569 4.80971 4.90486 4.95242 4.99365 5.01526 5.13962 5.22030 5.22770 5.31494 5.34309 5.53135 5.69187 5.81612 6.04603 6.06619 6.11788 6.19316 6.51675 6.80524 7.20673 7.39474 8.87644 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008244 B = 0.004108 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.676540 B = 6814.261257 C = 9539.122245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.322 6.322 3 C 0.118 3.882 4 C -0.186 4.186 5 C -0.043 4.043 6 C -0.152 4.152 7 C 0.561 3.439 8 O -0.588 6.588 9 N -0.587 5.587 10 C 0.246 3.754 11 C -0.546 4.546 12 H 0.058 0.942 13 C 0.035 3.965 14 N -0.909 5.909 15 Si 0.948 3.052 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.121 3.879 20 C -0.115 4.115 21 C 0.066 3.934 22 N -0.565 5.565 23 C 0.025 3.975 24 C 0.023 3.977 25 C -0.070 4.070 26 C 0.039 3.961 27 F -0.137 7.137 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.130 0.870 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.018 0.982 34 H 0.037 0.963 35 H 0.269 0.731 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.029 0.971 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.027 0.973 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.990 -2.028 1.821 5.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.071 3.929 4 C -0.204 4.204 5 C -0.061 4.061 6 C -0.156 4.156 7 C 0.350 3.650 8 O -0.471 6.471 9 N -0.315 5.315 10 C 0.125 3.875 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.167 4.167 14 N -0.547 5.547 15 Si 0.773 3.227 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.003 4.003 20 C -0.154 4.154 21 C -0.062 4.062 22 N -0.289 5.289 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.089 4.089 26 C 0.019 3.981 27 F -0.116 7.116 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.148 0.852 31 H 0.179 0.821 32 H 0.178 0.822 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.046 0.954 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 5.209 -2.351 1.596 5.934 hybrid contribution -0.632 0.600 0.789 1.175 sum 4.578 -1.751 2.385 5.451 Atomic orbital electron populations 1.23499 0.75529 1.06221 1.02747 1.86047 1.24233 1.25239 1.87969 1.19243 0.90554 0.86197 0.96897 1.21275 1.01516 0.90236 1.07383 1.22155 0.93429 1.00215 0.90346 1.19571 0.94371 0.92796 1.08829 1.18304 0.81953 0.84596 0.80158 1.90670 1.33450 1.81830 1.41133 1.48115 1.30633 1.15633 1.37111 1.19330 0.81801 0.97519 0.88838 1.21498 0.93081 1.37198 1.06621 0.92384 1.25526 1.01232 0.95019 0.94916 1.70011 1.26832 1.42125 1.15689 0.85766 0.78998 0.79168 0.78772 1.20145 1.20933 1.19023 1.21352 0.93703 0.85606 0.99592 1.21766 0.96591 0.97973 0.99035 1.21962 0.93453 0.97184 0.93643 1.61951 1.11788 1.10751 1.44444 1.22427 1.00002 0.89361 1.00475 1.22427 0.94759 0.96164 0.99169 1.20888 1.01081 0.88954 0.98002 1.16667 0.86350 0.82409 1.12637 1.91457 1.76755 1.48595 1.94790 0.91058 0.91779 0.85236 0.82095 0.82247 0.96409 0.94466 0.92189 0.89852 0.91059 0.93033 0.92198 0.89792 0.94435 0.95233 0.90273 0.90874 0.92363 0.90059 0.95445 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.81 113.37 1.11 1.38 16 2 O -0.32 -9.22 10.35 -90.94 -0.94 -10.16 16 3 C 0.12 3.86 6.70 22.66 0.15 4.01 16 4 C -0.19 -6.10 9.01 22.31 0.20 -5.90 16 5 C -0.04 -1.66 7.51 22.51 0.17 -1.49 16 6 C -0.15 -6.02 4.95 -20.09 -0.10 -6.11 16 7 C 0.56 23.88 7.23 86.71 0.63 24.51 16 8 O -0.59 -26.86 16.57 -3.99 -0.07 -26.93 16 9 N -0.59 -24.38 2.46 -829.83 -2.04 -26.42 16 10 C 0.25 11.24 4.66 85.63 0.40 11.64 16 11 C -0.55 -26.00 6.84 25.60 0.17 -25.82 16 12 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 13 C 0.04 1.70 5.46 84.66 0.46 2.16 16 14 N -0.91 -46.34 13.29 21.45 0.28 -46.06 16 15 Si 0.95 38.24 29.54 68.60 2.03 40.27 16 16 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 19 C 0.12 4.34 5.46 86.38 0.47 4.81 16 20 C -0.11 -3.68 5.46 30.60 0.17 -3.51 16 21 C 0.07 1.74 4.96 86.31 0.43 2.17 16 22 N -0.57 -14.02 5.02 -948.83 -4.76 -18.78 16 23 C 0.03 0.47 9.57 127.69 1.22 1.70 16 24 C 0.02 0.52 9.32 127.69 1.19 1.71 16 25 C -0.07 -2.50 9.69 22.55 0.22 -2.28 16 26 C 0.04 1.35 7.30 22.41 0.16 1.51 16 27 F -0.14 -4.66 17.10 44.97 0.77 -3.89 16 28 H 0.07 1.20 7.66 -2.39 -0.02 1.18 16 29 H 0.06 1.22 7.64 -2.39 -0.02 1.20 16 30 H 0.13 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.16 4.47 6.27 -2.91 -0.02 4.45 16 32 H 0.16 6.76 4.74 -2.91 -0.01 6.75 16 33 H 0.02 0.88 8.11 -2.38 -0.02 0.86 16 34 H 0.04 1.79 5.41 -2.39 -0.01 1.78 16 35 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 36 H 0.08 2.94 8.07 -2.39 -0.02 2.92 16 37 H 0.07 2.58 7.36 -2.39 -0.02 2.56 16 38 H 0.05 1.76 6.55 -2.39 -0.02 1.74 16 39 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 41 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 42 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 43 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 44 H 0.07 1.30 8.12 -2.39 -0.02 1.29 16 45 H 0.06 1.49 6.47 -2.39 -0.02 1.47 16 46 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 47 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 48 H 0.15 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -58.63 395.16 3.29 -55.34 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.96 Total: 26.14 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 7.06 Total: 10.48 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -6.52 Total: -91.25 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -1.01 Total: -37.09 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.77 Total: -3.89 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -58.63 3.29 -55.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263933041.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.747 kcal (2) G-P(sol) polarization free energy of solvation -58.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds