Wall clock time and date at job start Tue Mar 31 2020 20:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47333 * 120.00522 * 2 1 3 5 5 C 1.52997 * 109.47048 * 185.00265 * 4 2 1 6 6 S 1.81406 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81393 * 102.99985 * 179.97438 * 6 5 4 8 8 O 1.42105 * 109.46464 * 296.38463 * 6 5 4 9 9 N 1.46906 * 109.47088 * 240.00431 * 2 1 3 10 10 C 1.46899 * 111.00049 * 84.99950 * 9 2 1 11 11 C 1.50699 * 109.47104 * 180.02562 * 10 9 2 12 12 C 1.38286 * 119.92533 * 90.00165 * 11 10 9 13 13 C 1.38104 * 120.07376 * 180.25715 * 12 11 10 14 14 C 1.38918 * 119.92017 * 359.44392 * 13 12 11 15 15 N 1.39676 * 120.07049 * 180.30184 * 14 13 12 16 16 C 1.46502 * 119.99924 * 180.25823 * 15 14 13 17 17 C 1.46500 * 120.00213 * 0.25045 * 15 14 13 18 18 C 1.50692 * 109.47029 * 90.00163 * 17 15 14 19 19 H 1.07998 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00333 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47071 * 59.99714 * 22 20 18 24 24 H 1.48500 * 109.47149 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46705 * 299.99783 * 22 20 18 26 26 C 1.38905 * 119.85194 * 0.55157 * 14 13 12 27 27 C 1.38099 * 119.92845 * 359.72525 * 26 14 13 28 28 H 1.08993 * 109.47209 * 59.99676 * 1 2 3 29 29 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46887 * 299.99366 * 1 2 3 31 31 H 1.09001 * 109.46897 * 304.99924 * 4 2 1 32 32 H 1.09000 * 109.47202 * 64.99616 * 4 2 1 33 33 H 1.09001 * 109.46993 * 299.99600 * 5 4 2 34 34 H 1.09000 * 109.47649 * 59.99625 * 5 4 2 35 35 H 1.08994 * 109.47532 * 59.99529 * 7 6 5 36 36 H 1.09000 * 109.47187 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46745 * 299.99461 * 7 6 5 38 38 H 1.00897 * 110.99569 * 208.95178 * 9 2 1 39 39 H 1.09006 * 109.47061 * 59.99820 * 10 9 2 40 40 H 1.09004 * 109.46817 * 300.00324 * 10 9 2 41 41 H 1.08002 * 119.96057 * 359.97173 * 12 11 10 42 42 H 1.07998 * 120.04042 * 179.72222 * 13 12 11 43 43 H 1.08990 * 109.47426 * 89.99418 * 16 15 14 44 44 H 1.09005 * 109.46823 * 210.00050 * 16 15 14 45 45 H 1.09005 * 109.46514 * 329.99017 * 16 15 14 46 46 H 1.09003 * 109.47215 * 210.00592 * 17 15 14 47 47 H 1.09002 * 109.46876 * 330.00328 * 17 15 14 48 48 H 0.96995 * 119.99824 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.03717 * 179.70113 * 26 14 13 50 50 H 1.07997 * 119.96598 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4692 2.7943 7 6 5.9657 -1.2352 2.6958 8 8 3.6696 -0.8189 3.9546 9 7 2.0197 -0.6924 -1.1995 10 6 2.0825 0.2227 -2.3469 11 6 2.5873 -0.5216 -3.5561 12 6 1.6926 -1.1514 -4.4018 13 6 2.1523 -1.8388 -5.5078 14 6 3.5143 -1.8875 -5.7767 15 7 3.9821 -2.5765 -6.8980 16 6 5.4193 -2.6316 -7.1769 17 6 3.0358 -3.2443 -7.7950 18 6 2.6066 -2.2861 -8.8759 19 1 2.9997 -1.2804 -8.8933 20 6 1.7119 -2.6933 -9.8428 21 7 1.2334 -3.9182 -9.8220 22 14 1.1803 -1.5056 -11.1832 23 1 2.3699 -1.0677 -11.9567 24 1 0.2209 -2.1825 -12.0923 25 1 0.5280 -0.3228 -10.5662 26 6 4.4102 -1.2537 -4.9252 27 6 3.9443 -0.5728 -3.8177 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6054 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3573 35 1 6.1944 -0.1696 2.7052 36 1 6.4422 -1.7170 3.5496 37 1 6.3399 -1.6791 1.7732 38 1 2.9173 -1.1204 -1.0288 39 1 2.7589 1.0464 -2.1182 40 1 1.0870 0.6165 -2.5525 41 1 0.6335 -1.1094 -4.1945 42 1 1.4533 -2.3342 -6.1655 43 1 5.8514 -3.5039 -6.6868 44 1 5.5780 -2.7035 -8.2530 45 1 5.8976 -1.7280 -6.7988 46 1 3.5151 -4.1122 -8.2481 47 1 2.1627 -3.5665 -7.2274 48 1 0.6044 -4.2047 -10.5024 49 1 5.4702 -1.2937 -5.1287 50 1 4.6403 -0.0802 -3.1550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268417204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:48 Heat of formation + Delta-G solvation = -12.244864 kcal Electronic energy + Delta-G solvation = -26408.876952 eV Core-core repulsion = 22755.448066 eV Total energy + Delta-G solvation = -3653.428886 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.13338 -37.80923 -36.03354 -35.75212 -33.08988 -32.48888 -30.51430 -30.40701 -29.32104 -28.82485 -27.81118 -25.71690 -24.38239 -23.63736 -22.07161 -21.53514 -20.56411 -19.58103 -17.86809 -16.79627 -16.49296 -16.26597 -16.02080 -15.34454 -15.30982 -15.01611 -14.68188 -14.41663 -14.33199 -13.96911 -13.73677 -13.57541 -13.40573 -13.15976 -13.03193 -12.89451 -12.66915 -12.33048 -12.23138 -12.10209 -12.03535 -11.78406 -11.66323 -11.47847 -11.37948 -11.25771 -11.04406 -10.95983 -10.68503 -10.62509 -10.33260 -10.27466 -9.90919 -9.77898 -8.86756 -8.61565 -8.51409 -8.41245 -8.27760 -6.48156 -6.03018 -4.18615 1.13115 2.09766 2.20257 2.23685 3.26930 3.31555 3.34687 3.40929 4.11421 4.14686 4.40042 4.42425 4.54690 4.63539 4.70465 4.73922 4.84875 5.13724 5.20284 5.22871 5.27136 5.32826 5.39530 5.50460 5.53243 5.54630 5.58599 5.68678 5.71997 5.80169 5.86756 5.91388 6.01263 6.06495 6.17701 6.25980 6.38454 6.42777 6.62231 6.90919 6.98528 7.06747 7.17200 7.26074 7.36317 7.43512 7.59250 7.79637 8.14205 8.25202 8.47310 8.89976 9.48122 10.94463 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.002025 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.572117 B =13823.902011 C =14765.434505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.039 0.961 4 C -0.101 4.101 5 C -0.452 4.452 6 S 1.245 4.755 7 C -0.491 4.491 8 O -0.855 6.855 9 N -0.677 5.677 10 C 0.115 3.885 11 C -0.172 4.172 12 C -0.050 4.050 13 C -0.188 4.188 14 C 0.242 3.758 15 N -0.615 5.615 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.532 4.532 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.222 4.222 27 C -0.069 4.069 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.340 0.660 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.131 0.869 43 H 0.036 0.964 44 H 0.066 0.934 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.037 0.963 48 H 0.265 0.735 49 H 0.112 0.888 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.340 3.042 21.406 22.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 H 0.057 0.943 4 C -0.140 4.140 5 C -0.589 4.589 6 S 1.444 4.556 7 C -0.649 4.649 8 O -0.850 6.850 9 N -0.311 5.311 10 C -0.013 4.013 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.210 4.210 14 C 0.135 3.865 15 N -0.321 5.321 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.571 4.571 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.245 4.245 27 C -0.089 4.089 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.179 2.072 21.652 22.359 hybrid contribution 1.223 3.435 -0.842 3.742 sum 6.402 5.507 20.810 22.458 Atomic orbital electron populations 1.21798 0.94376 1.02632 1.01125 1.21505 0.95984 0.95614 0.89307 0.94338 1.21382 0.91322 1.02808 0.98512 1.27740 1.04038 1.10253 1.16844 1.70586 0.85276 1.15561 0.84214 1.27650 1.21484 1.07089 1.08635 1.93122 1.73795 1.77448 1.40679 1.60668 1.33586 1.33297 1.03551 1.20694 0.99950 0.92184 0.88482 1.19167 0.93240 1.06597 0.98522 1.20638 0.98495 0.94754 0.93023 1.20907 0.94335 1.05611 1.00155 1.17959 0.92698 0.89484 0.86378 1.47108 1.05877 1.54694 1.24425 1.21469 0.82132 0.99691 1.01277 1.19282 0.87831 0.92216 0.87727 1.21532 1.26057 0.98924 1.10589 0.92360 1.24965 0.95931 0.95291 0.97884 1.69919 1.31380 1.16811 1.35217 0.86581 0.78467 0.81081 0.81466 1.20279 1.21178 1.20106 1.20501 0.98463 1.06975 0.98593 1.20477 0.94330 0.97824 0.96233 0.92539 0.91634 0.92956 0.90938 0.89555 0.86359 0.89821 0.90283 0.87638 0.86737 0.84029 0.95658 0.90994 0.87030 0.85081 0.94597 0.91479 0.92758 0.95212 0.94558 0.92570 0.87009 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.41 37.16 0.35 -0.92 16 2 C 0.09 0.78 2.65 -67.71 -0.18 0.60 16 3 H 0.04 0.37 7.80 -51.93 -0.40 -0.03 16 4 C -0.10 -0.76 4.81 -26.73 -0.13 -0.89 16 5 C -0.45 -2.76 5.75 37.16 0.21 -2.55 16 6 S 1.25 6.96 13.80 -107.50 -1.48 5.48 16 7 C -0.49 -2.37 10.74 101.05 1.09 -1.29 16 8 O -0.86 -10.81 18.14 -35.23 -0.64 -11.45 16 9 N -0.68 -7.00 6.30 -107.98 -0.68 -7.68 16 10 C 0.12 1.37 5.61 -4.98 -0.03 1.34 16 11 C -0.17 -2.53 5.40 -104.59 -0.56 -3.09 16 12 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 13 C -0.19 -3.71 9.21 -39.38 -0.36 -4.07 16 14 C 0.24 4.75 6.55 -83.79 -0.55 4.20 16 15 N -0.62 -12.87 2.99 -181.00 -0.54 -13.41 16 16 C 0.10 1.68 10.19 59.85 0.61 2.29 16 17 C 0.25 6.14 4.92 -5.20 -0.03 6.12 16 18 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 19 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.36 13.29 55.43 0.74 -24.62 16 22 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 C -0.22 -3.68 9.21 -39.39 -0.36 -4.04 16 27 C -0.07 -1.01 9.69 -39.61 -0.38 -1.39 16 28 H 0.06 0.54 7.45 -51.93 -0.39 0.16 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.12 0.52 6.43 -51.92 -0.33 0.19 16 34 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.11 0.31 8.14 -51.92 -0.42 -0.12 16 38 H 0.34 3.15 6.46 -39.29 -0.25 2.89 16 39 H 0.03 0.29 8.00 -51.93 -0.42 -0.13 16 40 H 0.07 0.87 7.38 -51.93 -0.38 0.49 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.13 2.88 6.14 -52.49 -0.32 2.56 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 45 H 0.05 0.81 6.20 -51.93 -0.32 0.49 16 46 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 47 H 0.04 0.95 6.19 -51.93 -0.32 0.63 16 48 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 49 H 0.11 1.67 6.14 -52.48 -0.32 1.34 16 50 H 0.10 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 413.88 15.07 6.24 6.24 Total: -1.00 -34.11 413.88 -11.02 -45.13 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.50 Total: 2.18 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -1.13 Total: -17.97 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.48 Total: -45.71 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -0.64 Total: -11.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.48 Total: 5.48 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.11 -11.02 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268417204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.888 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds