Wall clock time and date at job start Tue Mar 31 2020 20:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47333 * 120.00522 * 2 1 3 5 5 C 1.52997 * 109.47048 * 185.00265 * 4 2 1 6 6 S 1.81406 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81393 * 102.99985 * 179.97438 * 6 5 4 8 8 O 1.42105 * 109.46464 * 296.38463 * 6 5 4 9 9 N 1.46906 * 109.47088 * 240.00431 * 2 1 3 10 10 C 1.46899 * 111.00049 * 84.99950 * 9 2 1 11 11 C 1.50699 * 109.47104 * 180.02562 * 10 9 2 12 12 C 1.38286 * 119.92533 * 90.00165 * 11 10 9 13 13 C 1.38104 * 120.07376 * 180.25715 * 12 11 10 14 14 C 1.38918 * 119.92017 * 359.44392 * 13 12 11 15 15 N 1.39676 * 120.07049 * 180.30184 * 14 13 12 16 16 C 1.46502 * 119.99924 * 180.25823 * 15 14 13 17 17 C 1.46500 * 120.00213 * 0.25045 * 15 14 13 18 18 C 1.50692 * 109.47029 * 90.00163 * 17 15 14 19 19 H 1.07998 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00333 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47071 * 59.99714 * 22 20 18 24 24 H 1.48500 * 109.47149 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.46705 * 299.99783 * 22 20 18 26 26 C 1.38905 * 119.85194 * 0.55157 * 14 13 12 27 27 C 1.38099 * 119.92845 * 359.72525 * 26 14 13 28 28 H 1.08993 * 109.47209 * 59.99676 * 1 2 3 29 29 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46887 * 299.99366 * 1 2 3 31 31 H 1.09001 * 109.46897 * 304.99924 * 4 2 1 32 32 H 1.09000 * 109.47202 * 64.99616 * 4 2 1 33 33 H 1.09001 * 109.46993 * 299.99600 * 5 4 2 34 34 H 1.09000 * 109.47649 * 59.99625 * 5 4 2 35 35 H 1.08994 * 109.47532 * 59.99529 * 7 6 5 36 36 H 1.09000 * 109.47187 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46745 * 299.99461 * 7 6 5 38 38 H 1.00897 * 110.99569 * 208.95178 * 9 2 1 39 39 H 1.09006 * 109.47061 * 59.99820 * 10 9 2 40 40 H 1.09004 * 109.46817 * 300.00324 * 10 9 2 41 41 H 1.08002 * 119.96057 * 359.97173 * 12 11 10 42 42 H 1.07998 * 120.04042 * 179.72222 * 13 12 11 43 43 H 1.08990 * 109.47426 * 89.99418 * 16 15 14 44 44 H 1.09005 * 109.46823 * 210.00050 * 16 15 14 45 45 H 1.09005 * 109.46514 * 329.99017 * 16 15 14 46 46 H 1.09003 * 109.47215 * 210.00592 * 17 15 14 47 47 H 1.09002 * 109.46876 * 330.00328 * 17 15 14 48 48 H 0.96995 * 119.99824 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.03717 * 179.70113 * 26 14 13 50 50 H 1.07997 * 119.96598 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4692 2.7943 7 6 5.9657 -1.2352 2.6958 8 8 3.6696 -0.8189 3.9546 9 7 2.0197 -0.6924 -1.1995 10 6 2.0825 0.2227 -2.3469 11 6 2.5873 -0.5216 -3.5561 12 6 1.6926 -1.1514 -4.4018 13 6 2.1523 -1.8388 -5.5078 14 6 3.5143 -1.8875 -5.7767 15 7 3.9821 -2.5765 -6.8980 16 6 5.4193 -2.6316 -7.1769 17 6 3.0358 -3.2443 -7.7950 18 6 2.6066 -2.2861 -8.8759 19 1 2.9997 -1.2804 -8.8933 20 6 1.7119 -2.6933 -9.8428 21 7 1.2334 -3.9182 -9.8220 22 14 1.1803 -1.5056 -11.1832 23 1 2.3699 -1.0677 -11.9567 24 1 0.2209 -2.1825 -12.0923 25 1 0.5280 -0.3228 -10.5662 26 6 4.4102 -1.2537 -4.9252 27 6 3.9443 -0.5728 -3.8177 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6054 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3573 35 1 6.1944 -0.1696 2.7052 36 1 6.4422 -1.7170 3.5496 37 1 6.3399 -1.6791 1.7732 38 1 2.9173 -1.1204 -1.0288 39 1 2.7589 1.0464 -2.1182 40 1 1.0870 0.6165 -2.5525 41 1 0.6335 -1.1094 -4.1945 42 1 1.4533 -2.3342 -6.1655 43 1 5.8514 -3.5039 -6.6868 44 1 5.5780 -2.7035 -8.2530 45 1 5.8976 -1.7280 -6.7988 46 1 3.5151 -4.1122 -8.2481 47 1 2.1627 -3.5665 -7.2274 48 1 0.6044 -4.2047 -10.5024 49 1 5.4702 -1.2937 -5.1287 50 1 4.6403 -0.0802 -3.1550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268417204.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:47 Heat of formation + Delta-G solvation = -34.649718 kcal Electronic energy + Delta-G solvation = -26409.848500 eV Core-core repulsion = 22755.448066 eV Total energy + Delta-G solvation = -3654.400434 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44189 -38.70594 -37.14783 -36.77331 -34.82446 -33.67491 -31.83996 -31.29735 -30.01927 -29.67693 -29.50779 -27.04301 -25.71252 -24.59766 -23.44976 -22.94336 -21.28569 -20.94701 -18.61302 -18.41311 -18.09635 -17.13574 -16.86658 -16.71520 -16.16573 -16.01980 -15.71295 -15.51439 -15.36567 -15.22599 -14.97430 -14.51745 -14.36342 -14.25100 -14.14590 -13.98700 -13.56543 -13.45835 -13.23018 -13.12821 -13.11846 -12.98265 -12.82601 -12.74101 -12.63801 -12.50549 -12.39048 -12.19595 -12.08963 -11.75140 -11.73691 -11.64876 -11.35748 -10.96616 -10.62283 -10.36715 -9.61606 -9.23093 -9.14747 -8.33882 -7.76185 -6.35418 0.66648 0.76500 0.88875 1.38028 1.39741 1.47948 1.80476 2.35526 2.67577 2.89647 3.06645 3.08123 3.54321 3.84241 3.98310 4.10991 4.12308 4.20216 4.27915 4.29742 4.44240 4.49060 4.51928 4.53798 4.68031 4.72344 4.75012 4.76974 4.78784 4.89857 4.93315 4.94899 5.05121 5.07489 5.11591 5.16720 5.17406 5.24167 5.25403 5.37796 5.45684 5.62803 5.71279 5.73702 5.98848 6.09538 6.19770 6.28567 6.53363 6.68166 6.85410 6.98632 7.36250 8.84755 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.002025 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.572117 B =13823.902011 C =14765.434505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.090 3.910 3 H 0.036 0.964 4 C -0.103 4.103 5 C -0.448 4.448 6 S 1.291 4.709 7 C -0.489 4.489 8 O -0.929 6.929 9 N -0.681 5.681 10 C 0.120 3.880 11 C -0.157 4.157 12 C -0.055 4.055 13 C -0.217 4.217 14 C 0.213 3.787 15 N -0.632 5.632 16 C 0.098 3.902 17 C 0.267 3.733 18 C -0.541 4.541 19 H 0.049 0.951 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.960 3.040 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.274 1.274 26 C -0.215 4.215 27 C -0.060 4.060 28 H 0.047 0.953 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.143 0.857 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.144 0.856 38 H 0.349 0.651 39 H 0.042 0.958 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.009 0.991 47 H 0.011 0.989 48 H 0.267 0.733 49 H 0.134 0.866 50 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 4.424 22.477 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.020 4.020 3 H 0.054 0.946 4 C -0.141 4.141 5 C -0.586 4.586 6 S 1.492 4.508 7 C -0.648 4.648 8 O -0.925 6.925 9 N -0.316 5.316 10 C -0.008 4.008 11 C -0.160 4.160 12 C -0.075 4.075 13 C -0.240 4.240 14 C 0.108 3.892 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.580 4.580 19 H 0.067 0.933 20 C -0.188 4.188 21 N -0.565 5.565 22 Si 0.785 3.215 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.199 1.199 26 C -0.237 4.237 27 C -0.079 4.079 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.161 0.839 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.060 0.940 40 H 0.086 0.914 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.029 0.971 48 H 0.076 0.924 49 H 0.152 0.848 50 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.034 3.468 22.767 24.080 hybrid contribution 0.683 3.037 -1.079 3.294 sum 7.717 6.505 21.688 23.922 Atomic orbital electron populations 1.21809 0.94682 1.02432 1.01130 1.21480 0.95751 0.95532 0.89282 0.94591 1.21370 0.92247 1.03376 0.97152 1.27701 1.03214 1.09979 1.17703 1.69792 0.85138 1.13878 0.82033 1.27631 1.19939 1.06629 1.10571 1.93002 1.76197 1.78902 1.44417 1.60582 1.34306 1.33164 1.03554 1.20618 1.00056 0.92356 0.87806 1.19477 0.93229 1.04785 0.98491 1.20757 0.99441 0.94664 0.92592 1.20771 0.94368 1.07535 1.01307 1.18234 0.93144 0.90887 0.86960 1.46959 1.06608 1.55691 1.24759 1.21601 0.80237 1.01727 1.00901 1.18752 0.87731 0.91463 0.87545 1.21749 1.26117 0.98752 1.11349 0.93308 1.25783 0.95960 0.96888 1.00136 1.70029 1.31976 1.18435 1.36106 0.85576 0.78301 0.78871 0.78735 1.19367 1.20451 1.19929 1.20775 0.99019 1.05810 0.98143 1.20898 0.94791 0.96475 0.95686 0.93369 0.91938 0.92171 0.92138 0.88160 0.83867 0.90734 0.91529 0.87123 0.83730 0.83025 0.94017 0.91404 0.86480 0.89004 0.92782 0.92750 0.90259 0.97299 0.97142 0.92410 0.84822 0.83817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.41 71.98 0.68 -1.69 16 2 C 0.09 1.41 2.65 44.91 0.12 1.53 16 3 H 0.04 0.60 7.80 -2.39 -0.02 0.58 16 4 C -0.10 -1.31 4.81 30.59 0.15 -1.16 16 5 C -0.45 -4.20 5.75 71.98 0.41 -3.78 16 6 S 1.29 12.11 13.80 -56.49 -0.78 11.33 16 7 C -0.49 -3.34 10.74 113.37 1.22 -2.12 16 8 O -0.93 -23.31 18.14 -148.98 -2.70 -26.01 16 9 N -0.68 -11.93 6.30 -495.55 -3.12 -15.05 16 10 C 0.12 2.47 5.61 85.56 0.48 2.95 16 11 C -0.16 -4.17 5.40 -19.84 -0.11 -4.28 16 12 C -0.06 -1.84 9.69 22.25 0.22 -1.62 16 13 C -0.22 -8.90 9.21 22.40 0.21 -8.69 16 14 C 0.21 8.34 6.55 38.21 0.25 8.59 16 15 N -0.63 -26.96 2.99 -726.56 -2.17 -29.13 16 16 C 0.10 3.27 10.19 127.77 1.30 4.57 16 17 C 0.27 13.88 4.92 85.63 0.42 14.30 16 18 C -0.54 -30.20 9.39 25.60 0.24 -29.96 16 19 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 20 C 0.01 0.65 5.46 84.65 0.46 1.11 16 21 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 22 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.21 -6.50 9.21 22.40 0.21 -6.30 16 27 C -0.06 -1.48 9.69 22.25 0.22 -1.27 16 28 H 0.05 0.87 7.45 -2.39 -0.02 0.85 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.14 0.62 6.43 -2.39 -0.02 0.60 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.35 4.98 6.46 -89.70 -0.58 4.40 16 39 H 0.04 0.76 8.00 -2.38 -0.02 0.74 16 40 H 0.07 1.48 7.38 -2.39 -0.02 1.47 16 41 H 0.12 3.64 8.06 -2.91 -0.02 3.62 16 42 H 0.09 4.41 6.14 -2.91 -0.02 4.40 16 43 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.05 1.91 8.07 -2.38 -0.02 1.89 16 45 H 0.08 2.19 6.20 -2.38 -0.01 2.18 16 46 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 47 H 0.01 0.60 6.19 -2.39 -0.01 0.58 16 48 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 49 H 0.13 3.43 6.14 -2.91 -0.02 3.41 16 50 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -77.37 413.88 0.34 -77.04 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.33 Total: 17.60 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: 6.47 Total: -27.82 kcal Atomic # 7 Polarization: -93.07 SS G_CDS: -5.01 Total: -98.08 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -2.70 Total: -26.01 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 12.11 SS G_CDS: -0.78 Total: 11.33 kcal Total: -77.37 0.34 -77.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268417204.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.388 kcal (2) G-P(sol) polarization free energy of solvation -77.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds