Wall clock time and date at job start Tue Mar 31 2020 20:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47333 * 120.00522 * 2 1 3 5 5 C 1.52997 * 109.47048 * 185.00265 * 4 2 1 6 6 S 1.81406 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81393 * 102.99985 * 179.97438 * 6 5 4 8 8 O 1.42103 * 109.46886 * 63.60515 * 6 5 4 9 9 N 1.46906 * 109.47088 * 240.00431 * 2 1 3 10 10 C 1.46899 * 111.00049 * 84.99950 * 9 2 1 11 11 C 1.50699 * 109.47104 * 180.02562 * 10 9 2 12 12 C 1.38286 * 119.92533 * 90.00165 * 11 10 9 13 13 C 1.38104 * 120.07376 * 180.25715 * 12 11 10 14 14 C 1.38918 * 119.92017 * 359.44392 * 13 12 11 15 15 N 1.39676 * 120.07049 * 180.30184 * 14 13 12 16 16 C 1.46502 * 119.99924 * 180.25823 * 15 14 13 17 17 C 1.46500 * 120.00213 * 0.25045 * 15 14 13 18 18 C 1.50692 * 109.47029 * 90.00163 * 17 15 14 19 19 H 1.07998 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00333 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46906 * 89.99568 * 22 20 18 24 24 H 1.48497 * 109.46839 * 209.99888 * 22 20 18 25 25 H 1.48495 * 109.46807 * 329.99870 * 22 20 18 26 26 C 1.38905 * 119.85194 * 0.55157 * 14 13 12 27 27 C 1.38099 * 119.92845 * 359.72525 * 26 14 13 28 28 H 1.09001 * 109.46887 * 299.99366 * 1 2 3 29 29 H 1.08993 * 109.47209 * 59.99676 * 1 2 3 30 30 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46897 * 304.99924 * 4 2 1 32 32 H 1.09000 * 109.47202 * 64.99616 * 4 2 1 33 33 H 1.09001 * 109.46993 * 299.99600 * 5 4 2 34 34 H 1.09000 * 109.47649 * 59.99625 * 5 4 2 35 35 H 1.08994 * 109.47532 * 59.99529 * 7 6 5 36 36 H 1.09000 * 109.47187 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46745 * 299.99461 * 7 6 5 38 38 H 1.00897 * 110.99569 * 208.95178 * 9 2 1 39 39 H 1.09006 * 109.47061 * 59.99820 * 10 9 2 40 40 H 1.09004 * 109.46817 * 300.00324 * 10 9 2 41 41 H 1.08002 * 119.96057 * 359.97173 * 12 11 10 42 42 H 1.07998 * 120.04042 * 179.72222 * 13 12 11 43 43 H 1.08990 * 109.47426 * 89.99418 * 16 15 14 44 44 H 1.09005 * 109.46823 * 210.00050 * 16 15 14 45 45 H 1.09005 * 109.46514 * 329.99017 * 16 15 14 46 46 H 1.09003 * 109.47215 * 210.00592 * 17 15 14 47 47 H 1.09002 * 109.46876 * 330.00328 * 17 15 14 48 48 H 0.96995 * 119.99824 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.03717 * 179.70113 * 26 14 13 50 50 H 1.07997 * 119.96598 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4692 2.7943 7 6 5.9657 -1.2352 2.6958 8 8 3.8668 -2.8543 2.6976 9 7 2.0197 -0.6924 -1.1995 10 6 2.0825 0.2227 -2.3469 11 6 2.5873 -0.5216 -3.5561 12 6 1.6926 -1.1514 -4.4018 13 6 2.1523 -1.8388 -5.5078 14 6 3.5143 -1.8875 -5.7767 15 7 3.9821 -2.5765 -6.8980 16 6 5.4193 -2.6316 -7.1769 17 6 3.0358 -3.2443 -7.7950 18 6 2.6066 -2.2861 -8.8759 19 1 2.9997 -1.2804 -8.8933 20 6 1.7119 -2.6933 -9.8428 21 7 1.2334 -3.9182 -9.8220 22 14 1.1803 -1.5056 -11.1832 23 1 2.1029 -1.6210 -12.3411 24 1 -0.2015 -1.8345 -11.6164 25 1 1.2171 -0.1174 -10.6574 26 6 4.4102 -1.2537 -4.9252 27 6 3.9443 -0.5728 -3.8177 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3573 35 1 6.1944 -0.1696 2.7052 36 1 6.4422 -1.7170 3.5496 37 1 6.3399 -1.6791 1.7732 38 1 2.9173 -1.1204 -1.0288 39 1 2.7589 1.0464 -2.1182 40 1 1.0870 0.6165 -2.5525 41 1 0.6335 -1.1094 -4.1945 42 1 1.4533 -2.3342 -6.1655 43 1 5.8514 -3.5039 -6.6868 44 1 5.5780 -2.7035 -8.2530 45 1 5.8976 -1.7280 -6.7988 46 1 3.5151 -4.1122 -8.2481 47 1 2.1627 -3.5665 -7.2274 48 1 0.6044 -4.2047 -10.5024 49 1 5.4702 -1.2937 -5.1287 50 1 4.6403 -0.0802 -3.1550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268417205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:53 Heat of formation + Delta-G solvation = -11.744927 kcal Electronic energy + Delta-G solvation = -26491.054337 eV Core-core repulsion = 22837.647129 eV Total energy + Delta-G solvation = -3653.407207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.11986 -37.79491 -35.98931 -35.74003 -33.08104 -32.47975 -30.50389 -30.39677 -29.31053 -28.81615 -27.80160 -25.70359 -24.37039 -23.63437 -22.06337 -21.52658 -20.53651 -19.57277 -17.82210 -16.79978 -16.48640 -16.24843 -16.01955 -15.37747 -15.25472 -14.98447 -14.73788 -14.37232 -14.27361 -13.94240 -13.69600 -13.59185 -13.39883 -13.13722 -13.01596 -12.88540 -12.68275 -12.33436 -12.20771 -12.08819 -12.01270 -11.78301 -11.61840 -11.51962 -11.39057 -11.25591 -10.99368 -10.92715 -10.69623 -10.61985 -10.30764 -10.25981 -9.89503 -9.76168 -8.84942 -8.62292 -8.50998 -8.38009 -8.26507 -6.47034 -6.01972 -4.17701 1.15881 2.10919 2.21484 2.24940 3.25568 3.32435 3.36917 3.44060 4.12811 4.15853 4.40849 4.43205 4.56221 4.64806 4.71676 4.76565 4.83533 5.15784 5.21172 5.21990 5.27607 5.33186 5.37889 5.51427 5.54505 5.55297 5.60063 5.67492 5.73310 5.80784 5.86527 5.93247 6.02231 6.07561 6.19167 6.26790 6.39410 6.43771 6.63170 6.92323 7.00035 7.09876 7.18272 7.27159 7.37353 7.43206 7.60449 7.80694 8.15223 8.26386 8.48341 8.91180 9.48990 10.95511 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.002093 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.859464 B =13376.398392 C =14259.157433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.087 3.913 3 H 0.043 0.957 4 C -0.102 4.102 5 C -0.454 4.454 6 S 1.242 4.758 7 C -0.492 4.492 8 O -0.848 6.848 9 N -0.681 5.681 10 C 0.116 3.884 11 C -0.173 4.173 12 C -0.050 4.050 13 C -0.188 4.188 14 C 0.242 3.758 15 N -0.616 5.616 16 C 0.098 3.902 17 C 0.249 3.751 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.223 4.223 27 C -0.070 4.070 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.338 0.662 39 H 0.026 0.974 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.132 0.868 43 H 0.035 0.965 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.030 0.970 47 H 0.036 0.964 48 H 0.264 0.736 49 H 0.112 0.888 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.487 11.510 26.634 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.141 4.141 5 C -0.591 4.591 6 S 1.441 4.559 7 C -0.649 4.649 8 O -0.844 6.844 9 N -0.315 5.315 10 C -0.012 4.012 11 C -0.176 4.176 12 C -0.069 4.069 13 C -0.210 4.210 14 C 0.135 3.865 15 N -0.321 5.321 16 C -0.046 4.046 17 C 0.129 3.871 18 C -0.570 4.570 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.198 1.198 26 C -0.246 4.246 27 C -0.089 4.089 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.100 0.900 38 H 0.159 0.841 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.130 0.870 42 H 0.150 0.850 43 H 0.053 0.947 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.130 0.870 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.330 10.493 26.852 29.153 hybrid contribution 1.536 0.280 -2.738 3.152 sum 5.866 10.774 24.114 27.055 Atomic orbital electron populations 1.21805 0.94410 1.02564 1.01174 1.21518 0.95946 0.95645 0.89307 0.93865 1.21392 0.91337 1.02722 0.98645 1.27758 1.03819 1.10645 1.16852 1.70390 0.87500 0.94767 1.03289 1.27657 1.21684 1.08261 1.07346 1.93171 1.78495 1.30592 1.82129 1.60643 1.33711 1.33370 1.03775 1.20691 0.99927 0.92128 0.88428 1.19188 0.93241 1.06650 0.98554 1.20641 0.98506 0.94760 0.93026 1.20911 0.94342 1.05582 1.00182 1.17953 0.92697 0.89468 0.86382 1.47105 1.05882 1.54699 1.24430 1.21469 0.82137 0.99684 1.01276 1.19292 0.87835 0.92244 0.87746 1.21567 1.25984 0.98940 1.10504 0.92288 1.24976 0.95929 0.95314 0.97918 1.69933 1.31444 1.16858 1.35105 0.86513 0.77912 0.81336 0.81816 1.20636 1.21054 1.19817 1.20504 0.98468 1.06992 0.98626 1.20476 0.94353 0.97893 0.96199 0.92704 0.92552 0.91888 0.90150 0.90373 0.89426 0.86627 0.87038 0.87693 0.90030 0.84145 0.95564 0.90924 0.86998 0.85041 0.94655 0.91426 0.92754 0.95212 0.94580 0.92627 0.87016 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.41 37.16 0.35 -0.90 16 2 C 0.09 0.78 2.65 -67.71 -0.18 0.60 16 3 H 0.04 0.35 7.80 -51.93 -0.40 -0.05 16 4 C -0.10 -0.76 4.81 -26.73 -0.13 -0.89 16 5 C -0.45 -2.74 5.75 37.16 0.21 -2.53 16 6 S 1.24 6.86 13.80 -107.50 -1.48 5.37 16 7 C -0.49 -2.38 10.74 101.05 1.09 -1.30 16 8 O -0.85 -11.35 18.14 -35.23 -0.64 -11.99 16 9 N -0.68 -8.11 6.30 -107.98 -0.68 -8.79 16 10 C 0.12 1.48 5.61 -4.98 -0.03 1.45 16 11 C -0.17 -2.76 5.40 -104.59 -0.56 -3.32 16 12 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 13 C -0.19 -3.93 9.21 -39.38 -0.36 -4.30 16 14 C 0.24 5.06 6.55 -83.79 -0.55 4.51 16 15 N -0.62 -13.54 2.99 -181.00 -0.54 -14.08 16 16 C 0.10 1.78 10.19 59.85 0.61 2.39 16 17 C 0.25 6.36 4.92 -5.20 -0.03 6.34 16 18 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 19 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 22 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.22 -3.99 9.21 -39.39 -0.36 -4.35 16 27 C -0.07 -1.11 9.69 -39.61 -0.38 -1.50 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.72 6.43 -51.92 -0.33 0.38 16 34 H 0.12 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 37 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.34 4.11 6.46 -39.29 -0.25 3.85 16 39 H 0.03 0.30 8.00 -51.93 -0.42 -0.11 16 40 H 0.07 0.91 7.38 -51.93 -0.38 0.53 16 41 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 42 H 0.13 3.03 6.14 -52.49 -0.32 2.71 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 45 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 46 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 47 H 0.04 0.98 6.19 -51.93 -0.32 0.66 16 48 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.11 1.81 6.14 -52.48 -0.32 1.49 16 50 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 413.88 15.07 6.24 6.24 Total: -1.00 -35.72 413.88 -11.02 -46.74 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -8.50 Total: 3.73 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -1.13 Total: -18.49 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.48 Total: -48.08 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.64 Total: -11.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -1.48 Total: 5.37 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.72 -11.02 -46.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268417205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.994 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds