Wall clock time and date at job start Tue Mar 31 2020 20:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47295 * 2 1 4 4 C 1.53002 * 109.47333 * 120.00522 * 2 1 3 5 5 C 1.52997 * 109.47048 * 185.00265 * 4 2 1 6 6 S 1.81406 * 109.46994 * 180.02562 * 5 4 2 7 7 C 1.81393 * 102.99985 * 179.97438 * 6 5 4 8 8 O 1.42103 * 109.46886 * 63.60515 * 6 5 4 9 9 N 1.46906 * 109.47088 * 240.00431 * 2 1 3 10 10 C 1.46899 * 111.00049 * 84.99950 * 9 2 1 11 11 C 1.50699 * 109.47104 * 180.02562 * 10 9 2 12 12 C 1.38286 * 119.92533 * 90.00165 * 11 10 9 13 13 C 1.38104 * 120.07376 * 180.25715 * 12 11 10 14 14 C 1.38918 * 119.92017 * 359.44392 * 13 12 11 15 15 N 1.39676 * 120.07049 * 180.30184 * 14 13 12 16 16 C 1.46502 * 119.99924 * 180.25823 * 15 14 13 17 17 C 1.46500 * 120.00213 * 0.25045 * 15 14 13 18 18 C 1.50692 * 109.47029 * 90.00163 * 17 15 14 19 19 H 1.07998 * 120.00179 * 0.02562 * 18 17 15 20 20 C 1.37881 * 120.00178 * 180.02562 * 18 17 15 21 21 N 1.31521 * 119.99945 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00333 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46906 * 89.99568 * 22 20 18 24 24 H 1.48497 * 109.46839 * 209.99888 * 22 20 18 25 25 H 1.48495 * 109.46807 * 329.99870 * 22 20 18 26 26 C 1.38905 * 119.85194 * 0.55157 * 14 13 12 27 27 C 1.38099 * 119.92845 * 359.72525 * 26 14 13 28 28 H 1.09001 * 109.46887 * 299.99366 * 1 2 3 29 29 H 1.08993 * 109.47209 * 59.99676 * 1 2 3 30 30 H 1.09002 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46897 * 304.99924 * 4 2 1 32 32 H 1.09000 * 109.47202 * 64.99616 * 4 2 1 33 33 H 1.09001 * 109.46993 * 299.99600 * 5 4 2 34 34 H 1.09000 * 109.47649 * 59.99625 * 5 4 2 35 35 H 1.08994 * 109.47532 * 59.99529 * 7 6 5 36 36 H 1.09000 * 109.47187 * 180.02562 * 7 6 5 37 37 H 1.09004 * 109.46745 * 299.99461 * 7 6 5 38 38 H 1.00897 * 110.99569 * 208.95178 * 9 2 1 39 39 H 1.09006 * 109.47061 * 59.99820 * 10 9 2 40 40 H 1.09004 * 109.46817 * 300.00324 * 10 9 2 41 41 H 1.08002 * 119.96057 * 359.97173 * 12 11 10 42 42 H 1.07998 * 120.04042 * 179.72222 * 13 12 11 43 43 H 1.08990 * 109.47426 * 89.99418 * 16 15 14 44 44 H 1.09005 * 109.46823 * 210.00050 * 16 15 14 45 45 H 1.09005 * 109.46514 * 329.99017 * 16 15 14 46 46 H 1.09003 * 109.47215 * 210.00592 * 17 15 14 47 47 H 1.09002 * 109.46876 * 330.00328 * 17 15 14 48 48 H 0.96995 * 119.99824 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.03717 * 179.70113 * 26 14 13 50 50 H 1.07997 * 119.96598 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 3.5648 -0.6133 1.3136 6 16 4.1696 -1.4692 2.7943 7 6 5.9657 -1.2352 2.6958 8 8 3.8668 -2.8543 2.6976 9 7 2.0197 -0.6924 -1.1995 10 6 2.0825 0.2227 -2.3469 11 6 2.5873 -0.5216 -3.5561 12 6 1.6926 -1.1514 -4.4018 13 6 2.1523 -1.8388 -5.5078 14 6 3.5143 -1.8875 -5.7767 15 7 3.9821 -2.5765 -6.8980 16 6 5.4193 -2.6316 -7.1769 17 6 3.0358 -3.2443 -7.7950 18 6 2.6066 -2.2861 -8.8759 19 1 2.9997 -1.2804 -8.8933 20 6 1.7119 -2.6933 -9.8428 21 7 1.2334 -3.9182 -9.8220 22 14 1.1803 -1.5056 -11.1832 23 1 2.1029 -1.6210 -12.3411 24 1 -0.2015 -1.8345 -11.6164 25 1 1.2171 -0.1174 -10.6574 26 6 4.4102 -1.2537 -4.9252 27 6 3.9443 -0.5728 -3.8177 28 1 -0.3633 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2619 2.1369 32 1 1.7517 -1.7716 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4369 1.3573 35 1 6.1944 -0.1696 2.7052 36 1 6.4422 -1.7170 3.5496 37 1 6.3399 -1.6791 1.7732 38 1 2.9173 -1.1204 -1.0288 39 1 2.7589 1.0464 -2.1182 40 1 1.0870 0.6165 -2.5525 41 1 0.6335 -1.1094 -4.1945 42 1 1.4533 -2.3342 -6.1655 43 1 5.8514 -3.5039 -6.6868 44 1 5.5780 -2.7035 -8.2530 45 1 5.8976 -1.7280 -6.7988 46 1 3.5151 -4.1122 -8.2481 47 1 2.1627 -3.5665 -7.2274 48 1 0.6044 -4.2047 -10.5024 49 1 5.4702 -1.2937 -5.1287 50 1 4.6403 -0.0802 -3.1550 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268417205.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:52 Heat of formation + Delta-G solvation = -36.241767 kcal Electronic energy + Delta-G solvation = -26492.116599 eV Core-core repulsion = 22837.647129 eV Total energy + Delta-G solvation = -3654.469470 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.52869 -38.71868 -37.21076 -36.76261 -34.87701 -33.70847 -31.93896 -31.30448 -30.05855 -29.67907 -29.57493 -27.10959 -25.75683 -24.59882 -23.51381 -23.04301 -21.25427 -21.02495 -18.67213 -18.36856 -18.18965 -17.16718 -16.92716 -16.73431 -16.21194 -16.01046 -15.72380 -15.63795 -15.40782 -15.24010 -14.96212 -14.56753 -14.37698 -14.35192 -14.14480 -14.06072 -13.55863 -13.48160 -13.27201 -13.19554 -13.16292 -13.03705 -12.80556 -12.73299 -12.66927 -12.57137 -12.36867 -12.22693 -12.12454 -11.77420 -11.73511 -11.68343 -11.44330 -10.94376 -10.67369 -10.44825 -9.72069 -9.25764 -9.15001 -8.39223 -7.84576 -6.40853 0.65885 0.70408 0.79634 1.34419 1.35801 1.47089 1.82691 2.31636 2.59137 2.93471 2.98740 3.03171 3.51318 3.86214 3.98503 4.04005 4.10721 4.16379 4.19841 4.30677 4.38437 4.43955 4.52461 4.58384 4.60899 4.66578 4.69867 4.73885 4.79554 4.83136 4.86690 4.96277 4.97883 5.07245 5.08503 5.14155 5.16627 5.17180 5.27135 5.28690 5.48700 5.55546 5.61748 5.65971 5.89330 6.03495 6.14990 6.28228 6.46091 6.52898 6.78741 6.89059 7.30963 8.80671 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016875 B = 0.002093 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.859464 B =13376.398392 C =14259.157433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.066 0.934 4 C -0.104 4.104 5 C -0.451 4.451 6 S 1.295 4.705 7 C -0.490 4.490 8 O -0.934 6.934 9 N -0.700 5.700 10 C 0.122 3.878 11 C -0.161 4.161 12 C -0.057 4.057 13 C -0.218 4.218 14 C 0.212 3.788 15 N -0.633 5.633 16 C 0.098 3.902 17 C 0.266 3.734 18 C -0.541 4.541 19 H 0.050 0.950 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.218 4.218 27 C -0.063 4.063 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.115 0.885 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.337 0.663 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.267 0.733 49 H 0.133 0.867 50 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.994 15.291 28.814 33.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 H 0.084 0.916 4 C -0.142 4.142 5 C -0.588 4.588 6 S 1.496 4.504 7 C -0.648 4.648 8 O -0.930 6.930 9 N -0.334 5.334 10 C -0.006 4.006 11 C -0.163 4.163 12 C -0.077 4.077 13 C -0.241 4.241 14 C 0.107 3.893 15 N -0.340 5.340 16 C -0.045 4.045 17 C 0.145 3.855 18 C -0.579 4.579 19 H 0.068 0.932 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.789 3.211 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.196 1.196 26 C -0.241 4.241 27 C -0.082 4.082 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.174 0.826 35 H 0.167 0.833 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.076 0.924 49 H 0.151 0.849 50 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.841 14.282 29.074 32.915 hybrid contribution 1.092 -0.803 -3.265 3.535 sum 6.933 13.478 25.809 29.931 Atomic orbital electron populations 1.21832 0.94682 1.01489 1.02041 1.21617 0.95707 0.96557 0.88466 0.91617 1.21420 0.92517 1.00807 0.99496 1.27749 1.02751 1.12784 1.15542 1.69394 0.87389 0.91433 1.02172 1.27644 1.19944 1.10718 1.06531 1.93033 1.80900 1.35112 1.83980 1.60579 1.33849 1.34094 1.04886 1.20641 1.00419 0.92254 0.87256 1.19606 0.93169 1.04811 0.98745 1.20793 0.99524 0.94722 0.92630 1.20795 0.94393 1.07509 1.01378 1.18226 0.93143 0.90904 0.87014 1.46971 1.06671 1.55657 1.24749 1.21602 0.80201 1.01603 1.01060 1.18770 0.87614 0.91571 0.87591 1.21751 1.26221 0.98720 1.11253 0.93189 1.25843 0.95846 0.97004 1.00253 1.70049 1.32012 1.18596 1.36065 0.85450 0.77782 0.78894 0.78931 1.19445 1.20374 1.19596 1.20791 0.99034 1.05971 0.98290 1.20920 0.94952 0.96684 0.95653 0.90122 0.93416 0.93956 0.86673 0.93821 0.91447 0.82586 0.83315 0.87253 0.91975 0.84312 0.93079 0.90866 0.86353 0.88868 0.93155 0.92383 0.90207 0.97353 0.97407 0.92360 0.84885 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.41 71.98 0.68 -1.56 16 2 C 0.09 1.29 2.65 44.91 0.12 1.41 16 3 H 0.07 0.74 7.80 -2.39 -0.02 0.72 16 4 C -0.10 -1.28 4.81 30.59 0.15 -1.13 16 5 C -0.45 -4.01 5.75 71.98 0.41 -3.59 16 6 S 1.29 11.99 13.80 -56.49 -0.78 11.21 16 7 C -0.49 -3.36 10.74 113.37 1.22 -2.14 16 8 O -0.93 -25.49 18.14 -148.98 -2.70 -28.19 16 9 N -0.70 -15.15 6.30 -495.55 -3.12 -18.27 16 10 C 0.12 2.73 5.61 85.56 0.48 3.21 16 11 C -0.16 -4.81 5.40 -19.84 -0.11 -4.92 16 12 C -0.06 -2.10 9.69 22.25 0.22 -1.89 16 13 C -0.22 -9.67 9.21 22.40 0.21 -9.47 16 14 C 0.21 9.05 6.55 38.21 0.25 9.31 16 15 N -0.63 -28.88 2.99 -726.56 -2.17 -31.06 16 16 C 0.10 3.54 10.19 127.77 1.30 4.84 16 17 C 0.27 14.54 4.92 85.63 0.42 14.96 16 18 C -0.54 -31.19 9.39 25.60 0.24 -30.94 16 19 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 20 C 0.01 0.55 5.46 84.65 0.46 1.02 16 21 N -0.93 -55.81 13.29 21.45 0.28 -55.53 16 22 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.22 -7.44 9.21 22.40 0.21 -7.23 16 27 C -0.06 -1.81 9.69 22.25 0.22 -1.60 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.82 7.45 -2.39 -0.02 0.80 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.94 6.43 -2.39 -0.02 0.93 16 34 H 0.16 0.14 8.14 -2.39 -0.02 0.12 16 35 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.34 7.45 6.46 -89.70 -0.58 6.87 16 39 H 0.05 0.92 8.00 -2.38 -0.02 0.90 16 40 H 0.07 1.65 7.38 -2.39 -0.02 1.63 16 41 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 42 H 0.09 4.76 6.14 -2.91 -0.02 4.74 16 43 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.06 2.16 8.07 -2.38 -0.02 2.14 16 45 H 0.08 2.42 6.20 -2.38 -0.01 2.40 16 46 H 0.01 0.49 8.07 -2.39 -0.02 0.47 16 47 H 0.01 0.47 6.19 -2.39 -0.01 0.46 16 48 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.13 3.91 6.14 -2.91 -0.02 3.89 16 50 H 0.14 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -83.61 413.88 0.34 -83.27 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.33 Total: 21.35 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 6.47 Total: -29.72 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -5.01 Total: -104.86 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -2.70 Total: -28.19 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 16 Polarization: 11.99 SS G_CDS: -0.78 Total: 11.21 kcal Total: -83.61 0.34 -83.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268417205.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.028 kcal (2) G-P(sol) polarization free energy of solvation -83.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds