Wall clock time and date at job start Tue Mar 31 2020 21:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46878 * 2 1 4 4 C 1.36938 * 120.00142 * 95.65212 * 3 2 1 5 5 H 1.08003 * 119.99893 * 163.57011 * 4 3 2 6 6 C 1.38813 * 120.00074 * 343.57823 * 4 3 2 7 7 N 1.31615 * 119.99529 * 351.27451 * 6 4 3 8 8 Si 1.86794 * 119.99939 * 171.28211 * 6 4 3 9 9 H 1.48501 * 109.47399 * 89.99669 * 8 6 4 10 10 H 1.48499 * 109.47037 * 209.99458 * 8 6 4 11 11 H 1.48498 * 109.47437 * 329.99834 * 8 6 4 12 12 C 1.46507 * 120.00231 * 275.65645 * 3 2 1 13 13 H 1.08995 * 109.47188 * 173.15046 * 12 3 2 14 14 C 1.53003 * 109.46824 * 53.15010 * 12 3 2 15 15 C 1.50698 * 109.46952 * 293.15516 * 12 3 2 16 16 O 1.21283 * 120.00254 * 19.57091 * 15 12 3 17 17 N 1.34772 * 119.99973 * 199.57459 * 15 12 3 18 18 C 1.46506 * 120.00033 * 359.97438 * 17 15 12 19 19 C 1.46504 * 120.00220 * 179.97438 * 17 15 12 20 20 C 1.50697 * 109.47105 * 89.99815 * 19 17 15 21 21 C 1.38270 * 119.93831 * 270.02435 * 20 19 17 22 22 C 1.38179 * 120.09697 * 180.02562 * 21 20 19 23 23 C 1.38659 * 119.96911 * 359.97438 * 22 21 20 24 24 O 1.35958 * 120.06209 * 180.27267 * 23 22 21 25 25 C 1.42902 * 116.99859 * 359.72603 * 24 23 22 26 26 C 1.38907 * 119.87570 * 0.02562 * 23 22 21 27 27 F 1.35099 * 120.04924 * 180.02562 * 26 23 22 28 28 C 1.38262 * 119.93999 * 90.00278 * 20 19 17 29 29 H 1.08993 * 109.47642 * 305.03588 * 1 2 3 30 30 H 1.09000 * 109.47490 * 65.03798 * 1 2 3 31 31 H 1.09008 * 109.46757 * 185.03592 * 1 2 3 32 32 H 1.09002 * 109.47356 * 240.00323 * 2 1 3 33 33 H 1.08999 * 109.47466 * 119.99503 * 2 1 3 34 34 H 0.97005 * 119.99723 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47509 * 300.00720 * 14 12 3 36 36 H 1.09004 * 109.47125 * 60.00362 * 14 12 3 37 37 H 1.09002 * 109.47019 * 180.02562 * 14 12 3 38 38 H 1.09006 * 109.46581 * 270.00234 * 18 17 15 39 39 H 1.08996 * 109.46691 * 29.99989 * 18 17 15 40 40 H 1.09000 * 109.46790 * 150.00247 * 18 17 15 41 41 H 1.09001 * 109.46684 * 329.99628 * 19 17 15 42 42 H 1.08998 * 109.47352 * 209.99988 * 19 17 15 43 43 H 1.07998 * 119.94626 * 0.02562 * 21 20 19 44 44 H 1.08002 * 120.01274 * 179.97438 * 22 21 20 45 45 H 1.08994 * 109.47024 * 299.99535 * 25 24 23 46 46 H 1.09004 * 109.46711 * 60.00073 * 25 24 23 47 47 H 1.08998 * 109.46915 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.97941 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3566 1.9879 1.1801 5 1 2.9555 2.8866 1.1730 6 6 1.9299 1.4476 2.3855 7 7 1.0625 0.4578 2.3926 8 14 2.5866 2.1257 3.9974 9 1 1.7083 3.2278 4.4654 10 1 2.6103 1.0452 5.0159 11 1 3.9634 2.6431 3.7925 12 6 2.1445 2.1136 -1.2626 13 1 2.4027 3.1522 -1.0559 14 6 0.8155 2.0592 -2.0188 15 6 3.2262 1.4844 -2.1022 16 8 3.5840 0.3475 -1.8778 17 7 3.7961 2.1851 -3.1025 18 6 3.3636 3.5583 -3.3740 19 6 4.8482 1.5737 -3.9184 20 6 4.2256 0.8760 -5.1002 21 6 3.8518 -0.4514 -4.9996 22 6 3.2812 -1.0945 -6.0813 23 6 3.0825 -0.4079 -7.2695 24 8 2.5161 -1.0372 -8.3333 25 6 2.1552 -2.4088 -8.1588 26 6 3.4584 0.9256 -7.3692 27 9 3.2660 1.5981 -8.5250 28 6 4.0288 1.5645 -6.2830 29 1 -0.3634 0.5899 0.8414 30 1 -0.3634 0.4337 -0.9316 31 1 -0.3633 -1.0238 0.0902 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.7640 0.0805 3.2350 35 1 0.5571 1.0206 -2.2253 36 1 0.0330 2.5143 -1.4114 37 1 0.9095 2.6037 -2.9583 38 1 2.5451 3.5458 -4.0938 39 1 3.0257 4.0226 -2.4475 40 1 4.1982 4.1280 -3.7826 41 1 5.3991 0.8499 -3.3179 42 1 5.5302 2.3473 -4.2711 43 1 4.0061 -0.9863 -4.0741 44 1 2.9901 -2.1315 -6.0014 45 1 3.0442 -2.9901 -7.9139 46 1 1.4310 -2.4937 -7.3486 47 1 1.7148 -2.7887 -9.0806 48 1 4.3210 2.6015 -6.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298253540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:50 Heat of formation + Delta-G solvation = -44.563172 kcal Electronic energy + Delta-G solvation = -30600.563836 eV Core-core repulsion = 26379.520346 eV Total energy + Delta-G solvation = -4221.043489 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.86389 -40.30730 -39.49285 -37.79775 -35.97071 -34.96919 -32.34634 -31.14015 -30.83730 -29.65641 -28.63370 -28.06461 -26.69600 -25.61391 -24.10537 -22.88434 -22.53393 -21.53099 -20.48947 -18.60026 -18.32436 -17.12093 -16.98695 -16.96468 -16.33366 -16.09894 -15.57513 -15.31385 -15.17862 -14.94309 -14.86555 -14.42281 -13.85901 -13.78462 -13.39717 -13.23124 -13.06302 -12.73943 -12.51431 -12.38747 -12.34736 -12.00956 -11.88686 -11.76063 -11.57394 -11.48784 -11.25962 -11.23482 -11.21511 -10.91012 -10.69037 -10.64580 -10.34247 -9.91707 -9.62148 -9.33155 -9.07298 -8.85411 -8.44402 -8.31577 -8.21317 -6.72267 -5.64296 -3.12232 1.01113 1.06406 2.91552 3.18869 3.33372 3.39542 3.45811 3.47157 3.68789 4.08028 4.49287 4.50738 4.64934 4.78594 4.88528 4.99180 5.09557 5.13419 5.20556 5.25922 5.32887 5.36787 5.46783 5.54213 5.58712 5.71154 5.76966 5.79809 5.95335 6.01702 6.03727 6.09397 6.28365 6.42732 6.48752 6.52605 6.78304 6.79679 6.92250 7.07498 7.10943 7.29102 7.37995 7.67191 7.79363 8.01583 8.25763 8.49306 8.86613 9.31043 9.89159 10.34682 11.33327 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002938 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.950735 B = 9527.453948 C =10203.887073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.170 3.830 3 N -0.571 5.571 4 C -0.250 4.250 5 H 0.068 0.932 6 C -0.002 4.002 7 N -0.899 5.899 8 Si 0.908 3.092 9 H -0.289 1.289 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.160 3.840 13 H 0.082 0.918 14 C -0.153 4.153 15 C 0.497 3.503 16 O -0.525 6.525 17 N -0.624 5.624 18 C 0.080 3.920 19 C 0.156 3.844 20 C -0.107 4.107 21 C -0.062 4.062 22 C -0.183 4.183 23 C 0.093 3.907 24 O -0.313 6.313 25 C 0.026 3.974 26 C 0.061 3.939 27 F -0.136 7.136 28 C -0.104 4.104 29 H 0.084 0.916 30 H 0.014 0.986 31 H 0.016 0.984 32 H 0.019 0.981 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.042 0.958 38 H 0.051 0.949 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.101 0.899 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 0.582 -19.342 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 N -0.290 5.290 4 C -0.379 4.379 5 H 0.086 0.914 6 C -0.199 4.199 7 N -0.546 5.546 8 Si 0.739 3.261 9 H -0.216 1.216 10 H -0.217 1.217 11 H -0.208 1.208 12 C 0.046 3.954 13 H 0.100 0.900 14 C -0.213 4.213 15 C 0.284 3.716 16 O -0.398 6.398 17 N -0.360 5.360 18 C -0.064 4.064 19 C 0.033 3.967 20 C -0.109 4.109 21 C -0.080 4.080 22 C -0.201 4.201 23 C 0.047 3.953 24 O -0.226 6.226 25 C -0.069 4.069 26 C 0.042 3.958 27 F -0.115 7.115 28 C -0.124 4.124 29 H 0.102 0.898 30 H 0.033 0.967 31 H 0.035 0.965 32 H 0.037 0.963 33 H 0.106 0.894 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.159 0.841 44 H 0.155 0.845 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.120 0.880 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.264 -0.050 -19.208 19.675 hybrid contribution 0.155 0.249 0.669 0.731 sum 4.419 0.198 -18.538 19.059 Atomic orbital electron populations 1.22570 0.99742 0.98642 0.99926 1.20811 0.91569 0.83821 0.99273 1.43925 1.74674 1.10912 0.99518 1.19290 1.26314 1.08575 0.83693 0.91380 1.24860 0.98208 0.99045 0.97755 1.70178 1.32699 1.27370 1.24326 0.86200 0.78469 0.77837 0.83638 1.21609 1.21659 1.20780 1.20248 0.91516 0.95847 0.87740 0.90026 1.22346 0.98090 1.02172 0.98652 1.23038 0.83149 0.86610 0.78767 1.90565 1.62482 1.18485 1.68311 1.48327 1.39623 1.14732 1.33323 1.21812 0.99894 0.82563 1.02087 1.20224 0.89488 0.97684 0.89305 1.20121 1.01533 0.94300 0.94932 1.21169 0.94495 0.94172 0.98194 1.21183 1.05363 1.01124 0.92464 1.19018 0.96921 0.91298 0.88090 1.86109 1.75303 1.26295 1.34938 1.23114 1.00289 0.79704 1.03771 1.16890 1.06833 0.88207 0.83916 1.91481 1.93593 1.79721 1.46698 1.20863 0.99695 1.00485 0.91317 0.89774 0.96732 0.96525 0.96306 0.89352 0.93932 0.92052 0.91510 0.93908 0.93045 0.90407 0.91757 0.88940 0.90127 0.84132 0.84532 0.92414 0.92274 0.88047 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.08 37.15 0.34 -3.23 16 2 C 0.17 4.31 4.68 -4.04 -0.02 4.30 16 3 N -0.57 -14.19 2.35 -166.98 -0.39 -14.58 16 4 C -0.25 -6.70 9.69 -15.06 -0.15 -6.85 16 5 H 0.07 1.77 7.78 -52.48 -0.41 1.36 16 6 C 0.00 -0.05 5.20 -17.43 -0.09 -0.14 16 7 N -0.90 -25.21 7.94 55.49 0.44 -24.77 16 8 Si 0.91 21.61 29.56 -169.99 -5.03 16.59 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.16 3.19 2.38 -69.08 -0.16 3.02 16 13 H 0.08 1.53 6.05 -51.93 -0.31 1.21 16 14 C -0.15 -2.72 7.74 37.16 0.29 -2.43 16 15 C 0.50 9.39 6.88 -10.99 -0.08 9.32 16 16 O -0.52 -11.61 13.45 5.56 0.07 -11.54 16 17 N -0.62 -8.89 2.86 -182.95 -0.52 -9.41 16 18 C 0.08 0.86 9.58 59.85 0.57 1.43 16 19 C 0.16 1.92 5.57 -5.19 -0.03 1.89 16 20 C -0.11 -1.31 5.46 -104.60 -0.57 -1.89 16 21 C -0.06 -0.80 9.69 -39.59 -0.38 -1.19 16 22 C -0.18 -2.16 9.04 -39.45 -0.36 -2.51 16 23 C 0.09 1.17 6.69 -39.18 -0.26 0.91 16 24 O -0.31 -3.74 10.36 -19.61 -0.20 -3.94 16 25 C 0.03 0.20 9.81 101.05 0.99 1.19 16 26 C 0.06 0.79 7.31 -39.30 -0.29 0.50 16 27 F -0.14 -1.84 17.11 2.25 0.04 -1.80 16 28 C -0.10 -1.18 9.67 -39.54 -0.38 -1.56 16 29 H 0.08 2.24 6.32 -51.93 -0.33 1.91 16 30 H 0.01 0.30 4.99 -51.93 -0.26 0.05 16 31 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.02 0.48 6.16 -51.93 -0.32 0.16 16 33 H 0.09 2.54 5.92 -51.93 -0.31 2.24 16 34 H 0.25 6.86 8.31 -40.82 -0.34 6.53 16 35 H 0.06 1.18 5.96 -51.93 -0.31 0.87 16 36 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 37 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 38 H 0.05 0.52 7.63 -51.93 -0.40 0.12 16 39 H 0.08 0.86 5.95 -51.93 -0.31 0.55 16 40 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 41 H 0.09 1.28 7.36 -51.93 -0.38 0.90 16 42 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 43 H 0.14 2.00 7.57 -52.49 -0.40 1.60 16 44 H 0.14 1.32 6.30 -52.49 -0.33 0.99 16 45 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 46 H 0.06 0.42 7.65 -51.93 -0.40 0.03 16 47 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 380.04 15.07 5.73 5.73 Total: -1.00 -32.06 380.04 -7.29 -39.35 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.85 Total: 1.62 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.58 Total: 2.76 kcal Atomic # 7 Polarization: -48.29 SS G_CDS: -0.47 Total: -48.76 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.13 Total: -15.48 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.06 -7.29 -39.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298253540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.213 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds