Wall clock time and date at job start Tue Mar 31 2020 21:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.46878 * 2 1 4 4 C 1.36938 * 120.00142 * 95.65212 * 3 2 1 5 5 H 1.08003 * 119.99893 * 163.57011 * 4 3 2 6 6 C 1.38813 * 120.00074 * 343.57823 * 4 3 2 7 7 N 1.31615 * 119.99529 * 351.27451 * 6 4 3 8 8 Si 1.86794 * 119.99939 * 171.28211 * 6 4 3 9 9 H 1.48501 * 109.47399 * 89.99669 * 8 6 4 10 10 H 1.48499 * 109.47037 * 209.99458 * 8 6 4 11 11 H 1.48498 * 109.47437 * 329.99834 * 8 6 4 12 12 C 1.46507 * 120.00231 * 275.65645 * 3 2 1 13 13 H 1.08995 * 109.47188 * 173.15046 * 12 3 2 14 14 C 1.53003 * 109.46824 * 53.15010 * 12 3 2 15 15 C 1.50698 * 109.46952 * 293.15516 * 12 3 2 16 16 O 1.21283 * 120.00254 * 19.57091 * 15 12 3 17 17 N 1.34772 * 119.99973 * 199.57459 * 15 12 3 18 18 C 1.46506 * 120.00033 * 359.97438 * 17 15 12 19 19 C 1.46504 * 120.00220 * 179.97438 * 17 15 12 20 20 C 1.50697 * 109.47105 * 89.99815 * 19 17 15 21 21 C 1.38270 * 119.93831 * 270.02435 * 20 19 17 22 22 C 1.38179 * 120.09697 * 180.02562 * 21 20 19 23 23 C 1.38659 * 119.96911 * 359.97438 * 22 21 20 24 24 O 1.35958 * 120.06209 * 180.27267 * 23 22 21 25 25 C 1.42902 * 116.99859 * 359.72603 * 24 23 22 26 26 C 1.38907 * 119.87570 * 0.02562 * 23 22 21 27 27 F 1.35099 * 120.04924 * 180.02562 * 26 23 22 28 28 C 1.38262 * 119.93999 * 90.00278 * 20 19 17 29 29 H 1.08993 * 109.47642 * 305.03588 * 1 2 3 30 30 H 1.09000 * 109.47490 * 65.03798 * 1 2 3 31 31 H 1.09008 * 109.46757 * 185.03592 * 1 2 3 32 32 H 1.09002 * 109.47356 * 240.00323 * 2 1 3 33 33 H 1.08999 * 109.47466 * 119.99503 * 2 1 3 34 34 H 0.97005 * 119.99723 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47509 * 300.00720 * 14 12 3 36 36 H 1.09004 * 109.47125 * 60.00362 * 14 12 3 37 37 H 1.09002 * 109.47019 * 180.02562 * 14 12 3 38 38 H 1.09006 * 109.46581 * 270.00234 * 18 17 15 39 39 H 1.08996 * 109.46691 * 29.99989 * 18 17 15 40 40 H 1.09000 * 109.46790 * 150.00247 * 18 17 15 41 41 H 1.09001 * 109.46684 * 329.99628 * 19 17 15 42 42 H 1.08998 * 109.47352 * 209.99988 * 19 17 15 43 43 H 1.07998 * 119.94626 * 0.02562 * 21 20 19 44 44 H 1.08002 * 120.01274 * 179.97438 * 22 21 20 45 45 H 1.08994 * 109.47024 * 299.99535 * 25 24 23 46 46 H 1.09004 * 109.46711 * 60.00073 * 25 24 23 47 47 H 1.08998 * 109.46915 * 179.97438 * 25 24 23 48 48 H 1.08000 * 119.97941 * 359.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3566 1.9879 1.1801 5 1 2.9555 2.8866 1.1730 6 6 1.9299 1.4476 2.3855 7 7 1.0625 0.4578 2.3926 8 14 2.5866 2.1257 3.9974 9 1 1.7083 3.2278 4.4654 10 1 2.6103 1.0452 5.0159 11 1 3.9634 2.6431 3.7925 12 6 2.1445 2.1136 -1.2626 13 1 2.4027 3.1522 -1.0559 14 6 0.8155 2.0592 -2.0188 15 6 3.2262 1.4844 -2.1022 16 8 3.5840 0.3475 -1.8778 17 7 3.7961 2.1851 -3.1025 18 6 3.3636 3.5583 -3.3740 19 6 4.8482 1.5737 -3.9184 20 6 4.2256 0.8760 -5.1002 21 6 3.8518 -0.4514 -4.9996 22 6 3.2812 -1.0945 -6.0813 23 6 3.0825 -0.4079 -7.2695 24 8 2.5161 -1.0372 -8.3333 25 6 2.1552 -2.4088 -8.1588 26 6 3.4584 0.9256 -7.3692 27 9 3.2660 1.5981 -8.5250 28 6 4.0288 1.5645 -6.2830 29 1 -0.3634 0.5899 0.8414 30 1 -0.3634 0.4337 -0.9316 31 1 -0.3633 -1.0238 0.0902 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 0.7640 0.0805 3.2350 35 1 0.5571 1.0206 -2.2253 36 1 0.0330 2.5143 -1.4114 37 1 0.9095 2.6037 -2.9583 38 1 2.5451 3.5458 -4.0938 39 1 3.0257 4.0226 -2.4475 40 1 4.1982 4.1280 -3.7826 41 1 5.3991 0.8499 -3.3179 42 1 5.5302 2.3473 -4.2711 43 1 4.0061 -0.9863 -4.0741 44 1 2.9901 -2.1315 -6.0014 45 1 3.0442 -2.9901 -7.9139 46 1 1.4310 -2.4937 -7.3486 47 1 1.7148 -2.7887 -9.0806 48 1 4.3210 2.6015 -6.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298253540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:49 Heat of formation + Delta-G solvation = -62.791206 kcal Electronic energy + Delta-G solvation = -30601.354262 eV Core-core repulsion = 26379.520346 eV Total energy + Delta-G solvation = -4221.833916 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.84243 -41.32300 -40.72675 -38.82324 -37.64883 -36.27106 -34.05552 -32.38074 -31.76532 -31.37879 -30.43376 -28.85703 -27.59293 -26.77237 -25.95528 -24.04554 -23.76510 -22.89642 -22.05379 -19.87261 -19.30956 -18.87153 -18.05579 -17.93721 -17.57583 -17.19794 -17.02814 -16.57905 -16.41959 -16.06412 -15.79641 -15.60726 -15.24116 -15.16186 -14.82475 -14.64389 -14.17586 -14.06696 -13.74355 -13.67294 -13.31719 -13.25305 -13.13727 -13.09168 -12.99323 -12.74771 -12.66391 -12.58443 -12.46394 -12.41039 -12.24301 -12.09876 -12.07636 -11.82660 -11.52049 -11.16476 -10.53923 -10.31213 -9.97923 -9.57366 -9.20862 -8.65528 -7.68592 -5.17207 0.08534 0.11537 1.49127 1.51553 1.59201 1.88868 2.12283 2.15666 2.54267 2.67845 3.15370 3.38967 3.62850 3.68114 3.74589 3.87540 4.01917 4.21510 4.25449 4.32643 4.33231 4.43783 4.46619 4.47951 4.52626 4.67270 4.72286 4.76323 4.83359 4.85945 4.96168 4.99212 5.01681 5.09463 5.13635 5.18522 5.27524 5.33978 5.45361 5.50073 5.60280 5.61251 5.73769 5.92255 6.22040 6.24711 6.44003 6.54148 7.26143 7.45971 7.95273 8.36736 9.27816 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.002938 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.950735 B = 9527.453948 C =10203.887073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.183 3.817 3 N -0.589 5.589 4 C -0.258 4.258 5 H 0.074 0.926 6 C -0.054 4.054 7 N -0.922 5.922 8 Si 0.969 3.031 9 H -0.284 1.284 10 H -0.299 1.299 11 H -0.276 1.276 12 C 0.152 3.848 13 H 0.096 0.904 14 C -0.141 4.141 15 C 0.495 3.505 16 O -0.568 6.568 17 N -0.614 5.614 18 C 0.069 3.931 19 C 0.157 3.843 20 C -0.112 4.112 21 C -0.075 4.075 22 C -0.183 4.183 23 C 0.088 3.912 24 O -0.331 6.331 25 C 0.017 3.983 26 C 0.043 3.957 27 F -0.142 7.142 28 C -0.089 4.089 29 H 0.057 0.943 30 H 0.035 0.965 31 H 0.020 0.980 32 H 0.015 0.985 33 H 0.049 0.951 34 H 0.243 0.757 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.124 0.876 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 2.498 -21.312 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 N -0.310 5.310 4 C -0.388 4.388 5 H 0.092 0.908 6 C -0.249 4.249 7 N -0.569 5.569 8 Si 0.798 3.202 9 H -0.210 1.210 10 H -0.226 1.226 11 H -0.201 1.201 12 C 0.041 3.959 13 H 0.114 0.886 14 C -0.200 4.200 15 C 0.283 3.717 16 O -0.445 6.445 17 N -0.348 5.348 18 C -0.072 4.072 19 C 0.035 3.965 20 C -0.114 4.114 21 C -0.094 4.094 22 C -0.202 4.202 23 C 0.042 3.958 24 O -0.245 6.245 25 C -0.077 4.077 26 C 0.024 3.976 27 F -0.121 7.121 28 C -0.108 4.108 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.119 0.881 41 H 0.089 0.911 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.170 0.830 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.142 0.858 48 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 4.845 1.922 -21.248 21.878 hybrid contribution 0.020 -0.349 1.123 1.176 sum 4.865 1.573 -20.125 20.765 Atomic orbital electron populations 1.22356 0.98648 0.98514 0.99733 1.20477 0.92301 0.84439 0.96988 1.44011 1.75296 1.10793 1.00856 1.19612 1.25878 1.08554 0.84744 0.90825 1.25573 0.98922 0.99799 1.00574 1.70368 1.33811 1.28522 1.24248 0.85251 0.78087 0.76911 0.79974 1.21048 1.22578 1.20147 1.20514 0.93032 0.96021 0.86359 0.88636 1.22173 0.96426 1.01503 0.99879 1.22535 0.83149 0.86186 0.79857 1.90557 1.63829 1.20262 1.69889 1.48196 1.38972 1.15724 1.31921 1.22129 1.01999 0.80561 1.02559 1.20361 0.89127 0.98433 0.88613 1.20080 1.01945 0.93985 0.95343 1.21157 0.95440 0.94962 0.97841 1.21289 1.05055 1.01909 0.91945 1.19180 0.96735 0.91569 0.88354 1.86093 1.75157 1.28242 1.34961 1.23411 1.01052 0.77969 1.05266 1.17170 1.07697 0.88548 0.84217 1.91462 1.93738 1.79807 1.47090 1.21042 0.98197 1.01553 0.90020 0.92437 0.94653 0.96134 0.96707 0.93274 0.94739 0.93788 0.92278 0.90190 0.91610 0.90729 0.88110 0.91082 0.86099 0.86111 0.83004 0.91290 0.91907 0.85815 0.81320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 9.08 71.98 0.65 -5.82 16 2 C 0.18 9.59 4.68 86.38 0.40 10.00 16 3 N -0.59 -29.57 2.35 -682.20 -1.60 -31.17 16 4 C -0.26 -13.97 9.69 84.03 0.81 -13.15 16 5 H 0.07 3.80 7.78 -2.91 -0.02 3.77 16 6 C -0.05 -3.01 5.20 84.86 0.44 -2.57 16 7 N -0.92 -53.27 7.94 21.65 0.17 -53.10 16 8 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.15 5.92 2.38 44.24 0.11 6.03 16 13 H 0.10 3.40 6.05 -2.39 -0.01 3.39 16 14 C -0.14 -4.76 7.74 71.98 0.56 -4.20 16 15 C 0.50 18.30 6.88 87.66 0.60 18.90 16 16 O -0.57 -25.58 13.45 -3.04 -0.04 -25.62 16 17 N -0.61 -15.94 2.86 -851.12 -2.43 -18.37 16 18 C 0.07 1.20 9.58 127.77 1.22 2.42 16 19 C 0.16 3.48 5.57 85.63 0.48 3.96 16 20 C -0.11 -2.52 5.46 -19.85 -0.11 -2.63 16 21 C -0.08 -1.93 9.69 22.26 0.22 -1.71 16 22 C -0.18 -4.19 9.04 22.36 0.20 -3.99 16 23 C 0.09 2.11 6.69 22.53 0.15 2.26 16 24 O -0.33 -7.47 10.36 -93.08 -0.96 -8.43 16 25 C 0.02 0.23 9.81 113.37 1.11 1.35 16 26 C 0.04 1.03 7.31 22.45 0.16 1.19 16 27 F -0.14 -3.57 17.11 44.97 0.77 -2.80 16 28 C -0.09 -1.75 9.67 22.30 0.22 -1.53 16 29 H 0.06 3.12 6.32 -2.39 -0.02 3.10 16 30 H 0.03 1.52 4.99 -2.39 -0.01 1.51 16 31 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.01 0.78 6.16 -2.39 -0.01 0.77 16 33 H 0.05 2.96 5.92 -2.39 -0.01 2.94 16 34 H 0.24 13.80 8.31 -92.70 -0.77 13.02 16 35 H 0.04 1.63 5.96 -2.39 -0.01 1.62 16 36 H 0.06 2.08 8.00 -2.39 -0.02 2.06 16 37 H 0.08 2.07 6.89 -2.39 -0.02 2.06 16 38 H 0.07 1.00 7.63 -2.38 -0.02 0.99 16 39 H 0.07 1.38 5.95 -2.39 -0.01 1.36 16 40 H 0.10 1.07 7.89 -2.39 -0.02 1.05 16 41 H 0.07 1.92 7.36 -2.39 -0.02 1.91 16 42 H 0.12 1.72 7.84 -2.39 -0.02 1.70 16 43 H 0.12 3.59 7.57 -2.91 -0.02 3.57 16 44 H 0.15 2.83 6.30 -2.91 -0.02 2.82 16 45 H 0.07 0.78 7.67 -2.39 -0.02 0.77 16 46 H 0.06 0.81 7.65 -2.39 -0.02 0.80 16 47 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -72.03 380.04 6.15 -65.89 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.98 Total: 16.04 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 7.23 Total: 10.49 kcal Atomic # 7 Polarization: -98.78 SS G_CDS: -3.86 Total: -102.64 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.01 Total: -34.05 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.77 Total: -2.80 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -72.03 6.15 -65.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298253540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.095 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds