Wall clock time and date at job start Tue Mar 31 2020 22:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00619 * 3 2 1 5 5 H 1.48505 * 109.46775 * 30.00126 * 3 2 1 6 6 H 1.48495 * 109.47628 * 149.99872 * 3 2 1 7 7 C 1.37883 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99711 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00385 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 270.27463 * 10 9 7 12 12 C 1.53000 * 109.47637 * 269.72749 * 11 10 9 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 10 14 14 C 1.47011 * 111.00062 * 293.63441 * 13 12 11 15 15 C 1.53092 * 109.26074 * 177.60605 * 14 13 12 16 16 O 1.43021 * 109.26045 * 56.84909 * 15 14 13 17 17 C 1.43023 * 113.73441 * 301.33200 * 16 15 14 18 18 C 1.47012 * 110.99893 * 169.99740 * 13 12 11 19 19 C 1.34784 * 119.99635 * 90.00174 * 10 9 7 20 20 O 1.21283 * 119.99649 * 180.02562 * 19 10 9 21 21 C 1.50694 * 119.99988 * 0.02562 * 19 10 9 22 22 N 1.46497 * 109.47115 * 180.02562 * 21 19 10 23 23 C 1.34344 * 126.76221 * 125.00011 * 22 21 19 24 24 N 1.30886 * 108.20946 * 180.02562 * 23 22 21 25 25 C 1.33652 * 109.77404 * 359.97438 * 24 23 22 26 26 N 1.39608 * 125.61158 * 179.97438 * 25 24 23 27 27 N 1.31202 * 108.77598 * 359.71565 * 25 24 23 28 28 H 0.96993 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47073 * 59.99595 * 9 7 2 30 30 H 1.09004 * 109.47082 * 300.00219 * 9 7 2 31 31 H 1.09002 * 109.47192 * 29.72648 * 11 10 9 32 32 H 1.08996 * 109.47342 * 149.72358 * 11 10 9 33 33 H 1.09002 * 109.46747 * 300.00171 * 12 11 10 34 34 H 1.08996 * 109.47074 * 59.99445 * 12 11 10 35 35 H 1.09006 * 109.50562 * 297.54216 * 14 13 12 36 36 H 1.09007 * 109.50681 * 57.66859 * 14 13 12 37 37 H 1.08997 * 109.50787 * 296.91408 * 15 14 13 38 38 H 1.09005 * 109.54473 * 176.80322 * 15 14 13 39 39 H 1.08997 * 109.50650 * 298.73497 * 17 16 15 40 40 H 1.08999 * 109.53993 * 178.62029 * 17 16 15 41 41 H 1.09001 * 109.51003 * 302.32777 * 18 13 12 42 42 H 1.09002 * 109.50690 * 62.41612 * 18 13 12 43 43 H 1.08998 * 109.47224 * 299.99701 * 21 19 10 44 44 H 1.09002 * 109.47054 * 60.00213 * 21 19 10 45 45 H 1.07995 * 125.89653 * 0.03422 * 23 22 21 46 46 H 0.97004 * 119.99727 * 359.97438 * 26 25 24 47 47 H 0.97002 * 119.99977 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2389 -3.2676 1.2677 12 6 5.6840 -3.0334 1.7123 13 7 5.9234 -3.7273 2.9848 14 6 5.1299 -3.1293 4.0683 15 6 5.3633 -3.9179 5.3596 16 8 6.7621 -3.9322 5.6573 17 6 7.5649 -4.5085 4.6234 18 6 7.3537 -3.7258 3.3246 19 6 4.2241 -3.2107 -1.1683 20 8 4.6280 -4.3543 -1.1682 21 6 3.9730 -2.5004 -2.4733 22 7 4.2892 -3.3983 -3.5868 23 6 3.4751 -3.7420 -4.5987 24 7 4.1250 -4.5607 -5.3865 25 6 5.3574 -4.7632 -4.9106 26 7 6.3294 -5.5794 -5.4921 27 7 5.5053 -4.0644 -3.8101 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 3.5582 -2.8812 2.0263 32 1 4.0677 -4.3360 1.1364 33 1 6.3646 -3.4199 0.9536 34 1 5.8551 -1.9650 1.8436 35 1 5.4356 -2.0932 4.2142 36 1 4.0723 -3.1640 3.8067 37 1 5.0081 -4.9403 5.2309 38 1 4.8217 -3.4448 6.1787 39 1 7.2737 -5.5481 4.4733 40 1 8.6157 -4.4625 4.9093 41 1 7.9195 -4.1960 2.5202 42 1 7.6951 -2.6993 3.4579 43 1 2.9251 -2.2059 -2.5309 44 1 4.6035 -1.6131 -2.5312 45 1 2.4598 -3.4014 -4.7382 46 1 6.1329 -6.0584 -6.3124 47 1 7.2011 -5.6675 -5.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316571934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:58 Heat of formation + Delta-G solvation = 40.133464 kcal Electronic energy + Delta-G solvation = -29946.391170 eV Core-core repulsion = 25781.233115 eV Total energy + Delta-G solvation = -4165.158055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66192 -39.76348 -39.15290 -36.28660 -35.04146 -34.79495 -32.77739 -32.55538 -31.31742 -30.54992 -29.97621 -27.98696 -27.42041 -25.59715 -24.10246 -22.77577 -22.48476 -21.62524 -21.02348 -20.39451 -18.67058 -17.29474 -17.23015 -16.70917 -16.61210 -16.43550 -16.21607 -15.76711 -15.38966 -15.21680 -15.10637 -14.90309 -14.74361 -14.36520 -14.12673 -13.89259 -13.63588 -13.31955 -12.98822 -12.71432 -12.50185 -12.31031 -12.05397 -11.95111 -11.56752 -11.48588 -11.45907 -11.07355 -10.92566 -10.87264 -10.77494 -10.53548 -10.35598 -9.84387 -9.75366 -9.65829 -9.58863 -9.23978 -8.89478 -8.44821 -8.00980 -7.96017 -6.38257 -4.42619 2.01430 2.48464 3.04093 3.07245 3.12669 3.15799 3.36085 3.44047 3.66882 3.75783 3.99626 4.10986 4.71474 4.78388 4.85908 4.92055 4.92698 4.96918 5.05267 5.13044 5.18273 5.34638 5.38484 5.45309 5.46680 5.54056 5.60754 5.68309 5.72302 5.83332 5.87268 6.10431 6.13807 6.20796 6.28988 6.44645 6.65647 6.89390 6.90293 6.98962 7.03277 7.16191 7.24937 7.53704 7.57326 7.88376 8.20620 8.61899 8.64579 8.71553 9.19946 10.73683 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.004142 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.521624 B = 6759.022731 C =10131.031327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.081 3.919 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.550 4.550 8 H 0.081 0.919 9 C 0.206 3.794 10 N -0.589 5.589 11 C 0.129 3.871 12 C 0.044 3.956 13 N -0.533 5.533 14 C 0.011 3.989 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.509 3.491 20 O -0.534 6.534 21 C 0.116 3.884 22 N -0.359 5.359 23 C 0.279 3.721 24 N -0.579 5.579 25 C 0.457 3.543 26 N -0.831 5.831 27 N -0.342 5.342 28 H 0.269 0.731 29 H 0.036 0.964 30 H 0.028 0.972 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.041 0.959 43 H 0.144 0.856 44 H 0.111 0.889 45 H 0.220 0.780 46 H 0.410 0.590 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 -4.617 0.881 12.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.695 3.305 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.099 0.901 9 C 0.084 3.916 10 N -0.321 5.321 11 C 0.005 3.995 12 C -0.085 4.085 13 N -0.259 5.259 14 C -0.117 4.117 15 C -0.013 4.013 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.294 3.706 20 O -0.411 6.411 21 C -0.010 4.010 22 N -0.150 5.150 23 C -0.019 4.019 24 N -0.313 5.313 25 C 0.085 3.915 26 N -0.388 5.388 27 N -0.180 5.180 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.162 0.838 44 H 0.129 0.871 45 H 0.236 0.764 46 H 0.240 0.760 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 11.729 -5.512 1.242 13.019 hybrid contribution 0.315 1.872 -0.209 1.910 sum 12.043 -3.639 1.033 12.624 Atomic orbital electron populations 1.69874 1.06230 1.27468 1.48523 1.24868 0.94696 0.98848 0.93995 0.86976 0.80461 0.84033 0.79078 1.19665 1.20717 1.18957 1.21356 0.88782 0.95162 1.53541 0.90105 1.19884 0.96124 0.77809 0.97747 1.47807 1.64110 1.15801 1.04345 1.21195 0.94158 0.98737 0.85412 1.22502 0.99095 0.96265 0.90599 1.62113 1.06459 1.54637 1.02642 1.22897 1.00005 0.96955 0.91805 1.22683 0.82018 1.00245 0.96314 1.87962 1.17972 1.82562 1.42257 1.22645 0.95480 0.96611 0.86468 1.22764 0.89607 0.99931 0.98653 1.20219 0.78239 0.86790 0.85340 1.90722 1.45842 1.17460 1.87082 1.21724 1.05422 0.90908 0.82959 1.49607 1.09323 1.36189 1.19892 1.25828 0.98367 0.92918 0.84748 1.70172 1.05498 1.22921 1.32721 1.20472 0.88354 0.92997 0.89651 1.40819 1.13803 1.53204 1.30939 1.78281 1.03053 1.18306 1.18325 0.92119 0.94638 0.95383 0.90086 0.89797 0.90424 0.94583 0.93829 0.88776 0.92170 0.88427 0.92228 0.88667 0.89666 0.94097 0.83839 0.87096 0.76406 0.76040 0.76029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.79 13.96 55.43 0.77 -23.01 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 18.15 27.47 -169.99 -4.67 13.48 16 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.26 -5.27 6.54 56.52 0.37 -4.90 16 7 C -0.55 -12.96 9.84 -34.44 -0.34 -13.30 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.21 4.02 4.03 -5.20 -0.02 3.99 16 10 N -0.59 -10.90 2.46 -175.07 -0.43 -11.33 16 11 C 0.13 2.20 5.34 -4.05 -0.02 2.18 16 12 C 0.04 0.67 5.28 -3.83 -0.02 0.65 16 13 N -0.53 -7.26 4.73 -234.31 -1.11 -8.37 16 14 C 0.01 0.14 5.44 -3.72 -0.02 0.12 16 15 C 0.06 0.72 7.01 37.20 0.26 0.98 16 16 O -0.39 -4.84 10.83 -35.23 -0.38 -5.22 16 17 C 0.07 0.69 7.01 37.21 0.26 0.95 16 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 19 C 0.51 9.68 7.71 -10.98 -0.08 9.60 16 20 O -0.53 -11.74 15.33 5.56 0.09 -11.65 16 21 C 0.12 1.86 5.58 -5.20 -0.03 1.84 16 22 N -0.36 -6.08 3.40 -63.83 -0.22 -6.30 16 23 C 0.28 4.17 12.61 -90.69 -1.14 3.03 16 24 N -0.58 -9.53 11.21 -14.98 -0.17 -9.69 16 25 C 0.46 7.63 9.44 -321.17 -3.03 4.60 16 26 N -0.83 -10.09 9.13 30.00 0.27 -9.82 16 27 N -0.34 -6.34 11.85 29.99 0.36 -5.99 16 28 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 29 H 0.04 0.70 7.13 -51.93 -0.37 0.33 16 30 H 0.03 0.51 5.87 -51.93 -0.30 0.21 16 31 H 0.08 1.38 6.44 -51.93 -0.33 1.04 16 32 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 33 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 34 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.18 6.38 -51.93 -0.33 0.85 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.14 2.15 7.95 -51.93 -0.41 1.74 16 44 H 0.11 1.60 7.40 -51.93 -0.38 1.22 16 45 H 0.22 2.27 8.06 -52.49 -0.42 1.84 16 46 H 0.41 3.99 8.96 -40.82 -0.37 3.62 16 47 H 0.41 4.24 8.96 -40.82 -0.37 3.87 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -32.87 385.55 -11.04 -43.92 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -7.06 Total: 11.45 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: -4.31 Total: 16.72 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -0.52 Total: -74.51 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.30 Total: -16.87 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.67 Total: 13.48 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.87 -11.04 -43.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316571934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.051 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds