Wall clock time and date at job start Tue Mar 31 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00169 * 2 1 4 4 H 1.48500 * 109.47279 * 270.00619 * 3 2 1 5 5 H 1.48505 * 109.46775 * 30.00126 * 3 2 1 6 6 H 1.48495 * 109.47628 * 149.99872 * 3 2 1 7 7 C 1.37883 * 120.00419 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99711 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00385 * 179.97438 * 7 2 1 10 10 N 1.46494 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.46493 * 120.00444 * 270.27463 * 10 9 7 12 12 C 1.53000 * 109.47637 * 269.72749 * 11 10 9 13 13 N 1.46896 * 109.47529 * 179.97438 * 12 11 10 14 14 C 1.47011 * 111.00062 * 293.63441 * 13 12 11 15 15 C 1.53092 * 109.26074 * 177.60605 * 14 13 12 16 16 O 1.43021 * 109.26045 * 56.84909 * 15 14 13 17 17 C 1.43023 * 113.73441 * 301.33200 * 16 15 14 18 18 C 1.47012 * 110.99893 * 169.99740 * 13 12 11 19 19 C 1.34784 * 119.99635 * 90.00174 * 10 9 7 20 20 O 1.21283 * 119.99649 * 180.02562 * 19 10 9 21 21 C 1.50694 * 119.99988 * 0.02562 * 19 10 9 22 22 N 1.46497 * 109.47115 * 180.02562 * 21 19 10 23 23 C 1.34344 * 126.76221 * 125.00011 * 22 21 19 24 24 N 1.30886 * 108.20946 * 180.02562 * 23 22 21 25 25 C 1.33652 * 109.77404 * 359.97438 * 24 23 22 26 26 N 1.39608 * 125.61158 * 179.97438 * 25 24 23 27 27 N 1.31202 * 108.77598 * 359.71565 * 25 24 23 28 28 H 0.96993 * 119.99970 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47073 * 59.99595 * 9 7 2 30 30 H 1.09004 * 109.47082 * 300.00219 * 9 7 2 31 31 H 1.09002 * 109.47192 * 29.72648 * 11 10 9 32 32 H 1.08996 * 109.47342 * 149.72358 * 11 10 9 33 33 H 1.09002 * 109.46747 * 300.00171 * 12 11 10 34 34 H 1.08996 * 109.47074 * 59.99445 * 12 11 10 35 35 H 1.09006 * 109.50562 * 297.54216 * 14 13 12 36 36 H 1.09007 * 109.50681 * 57.66859 * 14 13 12 37 37 H 1.08997 * 109.50787 * 296.91408 * 15 14 13 38 38 H 1.09005 * 109.54473 * 176.80322 * 15 14 13 39 39 H 1.08997 * 109.50650 * 298.73497 * 17 16 15 40 40 H 1.08999 * 109.53993 * 178.62029 * 17 16 15 41 41 H 1.09001 * 109.51003 * 302.32777 * 18 13 12 42 42 H 1.09002 * 109.50690 * 62.41612 * 18 13 12 43 43 H 1.08998 * 109.47224 * 299.99701 * 21 19 10 44 44 H 1.09002 * 109.47054 * 60.00213 * 21 19 10 45 45 H 1.07995 * 125.89653 * 0.03422 * 23 22 21 46 46 H 0.97004 * 119.99727 * 359.97438 * 26 25 24 47 47 H 0.97002 * 119.99977 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9999 -2.5752 -0.0010 11 6 4.2389 -3.2676 1.2677 12 6 5.6840 -3.0334 1.7123 13 7 5.9234 -3.7273 2.9848 14 6 5.1299 -3.1293 4.0683 15 6 5.3633 -3.9179 5.3596 16 8 6.7621 -3.9322 5.6573 17 6 7.5649 -4.5085 4.6234 18 6 7.3537 -3.7258 3.3246 19 6 4.2241 -3.2107 -1.1683 20 8 4.6280 -4.3543 -1.1682 21 6 3.9730 -2.5004 -2.4733 22 7 4.2892 -3.3983 -3.5868 23 6 3.4751 -3.7420 -4.5987 24 7 4.1250 -4.5607 -5.3865 25 6 5.3574 -4.7632 -4.9106 26 7 6.3294 -5.5794 -5.4921 27 7 5.5053 -4.0644 -3.8101 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6803 0.8888 30 1 3.8745 -0.6800 -0.8911 31 1 3.5582 -2.8812 2.0263 32 1 4.0677 -4.3360 1.1364 33 1 6.3646 -3.4199 0.9536 34 1 5.8551 -1.9650 1.8436 35 1 5.4356 -2.0932 4.2142 36 1 4.0723 -3.1640 3.8067 37 1 5.0081 -4.9403 5.2309 38 1 4.8217 -3.4448 6.1787 39 1 7.2737 -5.5481 4.4733 40 1 8.6157 -4.4625 4.9093 41 1 7.9195 -4.1960 2.5202 42 1 7.6951 -2.6993 3.4579 43 1 2.9251 -2.2059 -2.5309 44 1 4.6035 -1.6131 -2.5312 45 1 2.4598 -3.4014 -4.7382 46 1 6.1329 -6.0584 -6.3124 47 1 7.2011 -5.6675 -5.0758 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316571934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:57 Heat of formation + Delta-G solvation = 17.816150 kcal Electronic energy + Delta-G solvation = -29947.358921 eV Core-core repulsion = 25781.233115 eV Total energy + Delta-G solvation = -4166.125806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.185 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.87976 -41.00932 -40.37101 -37.52197 -36.43952 -35.97447 -34.53634 -33.80016 -32.26024 -31.80179 -31.25926 -29.61853 -28.60932 -26.78613 -25.05093 -24.49878 -23.69510 -22.83508 -22.22851 -21.39049 -20.13348 -19.06946 -18.53253 -18.10345 -17.75137 -17.49307 -17.19121 -16.98544 -16.71353 -16.31699 -16.24236 -16.06085 -15.98781 -15.78529 -15.38626 -15.05419 -14.84355 -14.66308 -14.47678 -14.14369 -13.93297 -13.55768 -13.38565 -13.19165 -12.93703 -12.73544 -12.48049 -12.47736 -12.34242 -12.12604 -12.05146 -11.87334 -11.69091 -11.48395 -10.98014 -10.90500 -10.77830 -10.73986 -10.60257 -9.61845 -9.42029 -9.15868 -8.27269 -6.36073 0.80352 1.29125 1.42926 1.47074 1.53673 1.59527 2.03998 2.21508 2.36361 2.62407 2.79096 2.95156 3.06901 3.41650 3.69744 3.80416 3.89157 3.94930 3.97554 4.07160 4.15371 4.16987 4.28947 4.34678 4.40800 4.42656 4.56006 4.64713 4.69482 4.73981 4.78048 4.80980 4.88534 4.95133 4.99635 5.02226 5.42732 5.44911 5.55548 5.82775 5.89192 5.90618 6.13827 6.17113 6.47968 6.51208 6.57771 6.71975 7.16327 7.32104 7.51447 8.88106 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.007027 B = 0.004142 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3983.521624 B = 6759.022731 C =10131.031327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.030 3.970 3 Si 0.932 3.068 4 H -0.256 1.256 5 H -0.292 1.292 6 H -0.243 1.243 7 C -0.542 4.542 8 H 0.037 0.963 9 C 0.213 3.787 10 N -0.590 5.590 11 C 0.131 3.869 12 C 0.061 3.939 13 N -0.543 5.543 14 C 0.012 3.988 15 C 0.066 3.934 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.504 3.496 20 O -0.568 6.568 21 C 0.120 3.880 22 N -0.371 5.371 23 C 0.284 3.716 24 N -0.596 5.596 25 C 0.448 3.552 26 N -0.815 5.815 27 N -0.383 5.383 28 H 0.268 0.732 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.040 0.960 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.040 0.960 43 H 0.155 0.845 44 H 0.132 0.868 45 H 0.259 0.741 46 H 0.421 0.579 47 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.976 -3.544 0.755 13.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.170 4.170 3 Si 0.755 3.245 4 H -0.180 1.180 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.580 4.580 8 H 0.055 0.945 9 C 0.092 3.908 10 N -0.321 5.321 11 C 0.008 3.992 12 C -0.068 4.068 13 N -0.269 5.269 14 C -0.116 4.116 15 C -0.011 4.011 16 O -0.321 6.321 17 C -0.011 4.011 18 C -0.109 4.109 19 C 0.291 3.709 20 O -0.447 6.447 21 C -0.005 4.005 22 N -0.161 5.161 23 C -0.013 4.013 24 N -0.331 5.331 25 C 0.076 3.924 26 N -0.374 5.374 27 N -0.221 5.221 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.172 0.828 44 H 0.150 0.850 45 H 0.274 0.726 46 H 0.253 0.747 47 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 13.402 -4.466 1.106 14.170 hybrid contribution -0.245 1.404 -0.171 1.435 sum 13.157 -3.062 0.936 13.541 Atomic orbital electron populations 1.70029 1.08334 1.28390 1.50802 1.25652 0.95223 1.02579 0.93589 0.85958 0.79679 0.78946 0.79947 1.18009 1.21834 1.16643 1.21436 0.90794 0.93352 1.52436 0.94516 1.19775 0.93349 0.78530 0.99196 1.47854 1.63759 1.15610 1.04870 1.21172 0.95648 0.97404 0.84991 1.22224 0.97062 0.96362 0.91175 1.62109 1.07920 1.54562 1.02342 1.22920 0.99531 0.97005 0.92165 1.22749 0.81917 1.00284 0.96110 1.87948 1.18448 1.82749 1.42935 1.22779 0.96622 0.96234 0.85502 1.22839 0.88312 1.00235 0.99561 1.20755 0.77368 0.86493 0.86281 1.90702 1.47390 1.18984 1.87616 1.21770 1.06426 0.91045 0.81271 1.49611 1.09403 1.36724 1.20409 1.26684 0.99383 0.91624 0.83619 1.70218 1.05659 1.23757 1.33423 1.20915 0.89096 0.92985 0.89423 1.40865 1.13401 1.52090 1.31058 1.78193 1.04410 1.19898 1.19611 0.92235 0.93792 0.92667 0.90286 0.91754 0.91632 0.94333 0.94157 0.89312 0.92039 0.86610 0.92130 0.86241 0.89128 0.94139 0.82756 0.85006 0.72585 0.74676 0.75052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -51.11 13.96 21.45 0.30 -50.82 16 2 C 0.03 1.44 5.47 84.66 0.46 1.91 16 3 Si 0.93 35.86 27.47 68.60 1.88 37.75 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.29 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.24 -8.44 6.54 99.48 0.65 -7.79 16 7 C -0.54 -25.44 9.84 25.60 0.25 -25.19 16 8 H 0.04 2.02 8.06 -2.91 -0.02 2.00 16 9 C 0.21 7.95 4.03 85.63 0.35 8.29 16 10 N -0.59 -21.58 2.46 -826.19 -2.03 -23.60 16 11 C 0.13 4.53 5.34 86.38 0.46 4.99 16 12 C 0.06 1.81 5.28 86.30 0.46 2.27 16 13 N -0.54 -14.46 4.73 -895.22 -4.23 -18.69 16 14 C 0.01 0.29 5.44 86.31 0.47 0.76 16 15 C 0.07 1.39 7.01 72.01 0.50 1.90 16 16 O -0.40 -9.30 10.83 -148.98 -1.61 -10.92 16 17 C 0.07 1.27 7.01 72.02 0.50 1.77 16 18 C 0.02 0.41 5.65 86.32 0.49 0.90 16 19 C 0.50 19.03 7.71 87.65 0.68 19.70 16 20 O -0.57 -25.25 15.33 -3.04 -0.05 -25.29 16 21 C 0.12 3.71 5.58 85.63 0.48 4.19 16 22 N -0.37 -12.14 3.40 -355.85 -1.21 -13.35 16 23 C 0.28 8.06 12.61 180.37 2.27 10.33 16 24 N -0.60 -18.90 11.21 -201.31 -2.26 -21.16 16 25 C 0.45 14.58 9.44 260.91 2.46 17.04 16 26 N -0.81 -18.93 9.13 -59.01 -0.54 -19.47 16 27 N -0.38 -13.96 11.85 -59.03 -0.70 -14.66 16 28 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 29 H 0.04 1.61 7.13 -2.39 -0.02 1.59 16 30 H 0.06 1.81 5.87 -2.38 -0.01 1.80 16 31 H 0.08 2.72 6.44 -2.39 -0.02 2.70 16 32 H 0.06 2.47 7.42 -2.39 -0.02 2.45 16 33 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 34 H 0.04 1.13 8.12 -2.39 -0.02 1.11 16 35 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.09 2.22 6.38 -2.38 -0.02 2.21 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.12 1.98 8.14 -2.38 -0.02 1.97 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.90 8.09 -2.39 -0.02 1.88 16 42 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.15 4.39 7.95 -2.39 -0.02 4.37 16 44 H 0.13 3.47 7.40 -2.39 -0.02 3.46 16 45 H 0.26 4.71 8.06 -2.91 -0.02 4.69 16 46 H 0.42 7.64 8.96 -92.71 -0.83 6.81 16 47 H 0.42 8.23 8.96 -92.71 -0.83 7.40 16 Total: -1.00 -71.84 385.55 -1.31 -73.15 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.70 Total: 38.21 kcal Atomic # 6 Polarization: 39.02 SS G_CDS: 9.83 Total: 48.85 kcal Atomic # 7 Polarization: -151.09 SS G_CDS: -10.67 Total: -161.75 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -1.66 Total: -36.21 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 1.88 Total: 37.75 kcal Total: -71.84 -1.31 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316571934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.966 kcal (2) G-P(sol) polarization free energy of solvation -71.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds