Wall clock time and date at job start Tue Mar 31 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35942 * 117.00284 * 2 1 4 4 C 1.38745 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.10478 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.10072 * 359.72704 * 5 4 3 7 7 F 1.35097 * 120.00142 * 180.29329 * 6 5 4 8 8 C 1.39088 * 119.99869 * 0.57306 * 6 5 4 9 9 N 1.39827 * 120.05299 * 179.69772 * 8 6 5 10 10 C 1.46956 * 111.00362 * 119.72762 * 9 8 6 11 11 C 1.53048 * 109.36902 * 183.18873 * 10 9 8 12 12 N 1.46952 * 109.36498 * 301.60229 * 11 10 9 13 13 C 1.46893 * 110.99937 * 183.18986 * 12 11 10 14 14 C 1.52996 * 109.47576 * 75.70386 * 13 12 11 15 15 O 1.42896 * 109.47551 * 64.64134 * 14 13 12 16 16 C 1.42902 * 114.00447 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47135 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00350 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46845 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46916 * 120.00114 * 21 19 17 24 24 H 1.48504 * 109.46797 * 239.99953 * 21 19 17 25 25 C 1.46953 * 110.88602 * 59.31419 * 12 11 10 26 26 C 1.46954 * 111.00291 * 243.52727 * 9 8 6 27 27 C 1.38605 * 119.99817 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47257 * 300.00143 * 1 2 3 29 29 H 1.08999 * 109.47081 * 60.00279 * 1 2 3 30 30 H 1.08994 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.94653 * 0.02975 * 4 3 2 32 32 H 1.07995 * 119.94766 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.48844 * 63.21629 * 10 9 8 34 34 H 1.09008 * 109.48594 * 303.15655 * 10 9 8 35 35 H 1.08997 * 109.48916 * 181.62348 * 11 10 9 36 36 H 1.08999 * 109.50356 * 61.57577 * 11 10 9 37 37 H 1.09002 * 109.47245 * 195.70517 * 13 12 11 38 38 H 1.09002 * 109.47337 * 315.69695 * 13 12 11 39 39 H 1.09000 * 109.47760 * 184.64705 * 14 13 12 40 40 H 1.09008 * 109.46969 * 304.64498 * 14 13 12 41 41 H 1.08998 * 109.47177 * 300.00379 * 16 15 14 42 42 H 1.09004 * 109.46830 * 60.00256 * 16 15 14 43 43 H 0.97005 * 120.00361 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.48610 * 60.64759 * 25 12 11 45 45 H 1.08996 * 109.49541 * 180.71519 * 25 12 11 46 46 H 1.09001 * 109.49117 * 296.77861 * 26 9 8 47 47 H 1.09007 * 109.49141 * 56.82383 * 26 9 8 48 48 H 1.07998 * 120.05642 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2906 2.3749 -0.0005 5 6 1.9159 3.6077 0.0000 6 6 3.2965 3.6850 0.0068 7 9 3.9056 4.8909 0.0133 8 6 4.0582 2.5213 0.0010 9 7 5.4544 2.5982 0.0015 10 6 6.0176 1.9419 1.1896 11 6 7.5381 2.1168 1.1932 12 7 8.0976 1.5413 -0.0378 13 6 9.5643 1.6220 -0.0373 14 6 10.1336 0.5545 0.8993 15 8 9.8195 -0.7430 0.3896 16 6 10.3080 -1.8177 1.1949 17 6 9.9221 -3.1319 0.5663 18 1 9.3597 -3.1451 -0.3555 19 6 10.2861 -4.3174 1.1688 20 7 10.9704 -4.3014 2.2917 21 14 9.8071 -5.9465 0.3901 22 1 9.0456 -5.6929 -0.8593 23 1 11.0326 -6.7235 0.0745 24 1 8.9618 -6.7180 1.3365 25 6 7.5344 2.1974 -1.2260 26 6 6.0140 2.0226 -1.2295 27 6 3.4303 1.2837 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2121 2.3174 -0.0005 32 1 1.3253 4.5119 -0.0008 33 1 5.7738 0.8798 1.1683 34 1 5.5975 2.3939 2.0882 35 1 7.9608 1.6061 2.0583 36 1 7.7823 3.1779 1.2421 37 1 9.9378 1.4554 -1.0477 38 1 9.8738 2.6092 0.3061 39 1 11.2159 0.6674 0.9638 40 1 9.6965 0.6709 1.8911 41 1 11.3938 -1.7542 1.2658 42 1 9.8741 -1.7504 2.1926 43 1 11.2262 -5.1355 2.7158 44 1 7.7782 3.2596 -1.2047 45 1 7.9545 1.7455 -2.1245 46 1 5.7701 0.9613 -1.2783 47 1 5.5909 2.5331 -2.0947 48 1 4.0194 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339118206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:45 Heat of formation + Delta-G solvation = -78.899320 kcal Electronic energy + Delta-G solvation = -29422.699562 eV Core-core repulsion = 25200.167146 eV Total energy + Delta-G solvation = -4222.532416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.82036 -40.68201 -39.46565 -37.67197 -36.51981 -35.05632 -32.65996 -31.14911 -30.95902 -30.27120 -28.70379 -27.51982 -26.84766 -25.31043 -23.70410 -23.20978 -22.24608 -21.87898 -21.12713 -19.72140 -18.52793 -17.50410 -17.14281 -16.53319 -16.33175 -16.18226 -15.70811 -15.52300 -15.31847 -14.94324 -14.84340 -14.73628 -14.53669 -14.26261 -14.21156 -13.99108 -13.62510 -13.24797 -13.08168 -12.83621 -12.71941 -12.38881 -12.30001 -11.88919 -11.80815 -11.49026 -11.32891 -11.27291 -11.15436 -11.01823 -10.86273 -10.73776 -10.59530 -10.30105 -9.93341 -9.26640 -9.01004 -8.74728 -8.74035 -8.34713 -8.09486 -8.03077 -6.05501 -4.06093 0.75496 0.95138 2.88833 3.20469 3.32511 3.38774 3.45896 3.51105 4.00012 4.12756 4.35222 4.40198 4.56599 4.70988 4.78097 4.80876 4.87945 4.99125 5.08327 5.12602 5.12642 5.22098 5.31089 5.31655 5.36098 5.40600 5.50294 5.63464 5.67587 5.70933 5.79369 5.81163 5.88311 5.89923 5.93197 6.06440 6.10990 6.16139 6.29121 6.33866 6.70800 6.94111 7.09510 7.17508 7.25883 7.28641 7.50891 7.86800 8.23580 8.69462 9.09444 9.58687 11.06265 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.002757 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.775761 B =10153.430082 C =12255.707052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.128 3.872 4 C -0.186 4.186 5 C -0.113 4.113 6 C 0.085 3.915 7 F -0.130 7.130 8 C 0.100 3.900 9 N -0.501 5.501 10 C 0.061 3.939 11 C 0.058 3.942 12 N -0.525 5.525 13 C 0.062 3.938 14 C 0.069 3.931 15 O -0.380 6.380 16 C 0.194 3.806 17 C -0.508 4.508 18 H 0.067 0.933 19 C 0.054 3.946 20 N -0.900 5.900 21 Si 0.906 3.094 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.061 3.939 26 C 0.062 3.938 27 C -0.151 4.151 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.038 0.962 40 H 0.034 0.966 41 H 0.001 0.999 42 H 0.002 0.998 43 H 0.262 0.738 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.096 17.680 -4.432 27.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.226 6.226 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.132 4.132 6 C 0.065 3.935 7 F -0.108 7.108 8 C 0.004 3.996 9 N -0.223 5.223 10 C -0.065 4.065 11 C -0.070 4.070 12 N -0.250 5.250 13 C -0.065 4.065 14 C -0.009 4.009 15 O -0.299 6.299 16 C 0.120 3.880 17 C -0.546 4.546 18 H 0.085 0.915 19 C -0.146 4.146 20 N -0.540 5.540 21 Si 0.733 3.267 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.068 4.068 26 C -0.064 4.064 27 C -0.172 4.172 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.098 0.902 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.971 17.369 -4.477 26.844 hybrid contribution -0.165 -0.531 0.088 0.563 sum -20.136 16.838 -4.389 26.613 Atomic orbital electron populations 1.23099 0.78184 1.04285 1.01314 1.86149 1.21506 1.26412 1.88495 1.18874 0.91899 0.84463 0.96629 1.21084 1.00350 0.91292 1.07733 1.20845 0.92367 0.98727 1.01258 1.17416 0.89928 0.80104 1.06096 1.91491 1.83584 1.41809 1.93940 1.18552 0.89963 0.90677 1.00387 1.59909 1.01018 1.57263 1.04109 1.22280 0.94713 0.97981 0.91505 1.22179 0.93345 0.97588 0.93870 1.62015 1.06070 1.55486 1.01464 1.22127 0.86719 0.96284 1.01395 1.22215 0.96860 0.86172 0.95678 1.87933 1.78781 1.12329 1.50905 1.20163 0.93210 0.84224 0.90412 1.21103 1.34893 0.89370 1.09283 0.91527 1.24949 0.95226 0.99415 0.95034 1.69976 1.38807 1.27290 1.17942 0.86312 0.78210 0.82811 0.79354 1.19472 1.20919 1.20905 1.22137 0.93329 0.97069 0.94231 1.22275 0.94764 0.98681 0.90703 1.20959 0.92174 0.98788 1.05244 0.92531 0.92547 0.88003 0.84531 0.84241 0.92540 0.90237 0.89607 0.94268 0.90204 0.94008 0.94400 0.94742 0.98079 0.97983 0.92824 0.94325 0.89757 0.92664 0.90300 0.83944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.31 -3.22 10.50 -19.56 -0.21 -3.43 16 3 C 0.13 1.34 6.68 -39.26 -0.26 1.07 16 4 C -0.19 -1.55 9.04 -39.39 -0.36 -1.90 16 5 C -0.11 -0.99 10.01 -39.57 -0.40 -1.39 16 6 C 0.09 0.96 7.31 -39.25 -0.29 0.68 16 7 F -0.13 -1.63 17.07 2.25 0.04 -1.59 16 8 C 0.10 1.20 4.73 -83.70 -0.40 0.80 16 9 N -0.50 -6.38 4.51 -170.89 -0.77 -7.15 16 10 C 0.06 0.80 5.31 -3.77 -0.02 0.78 16 11 C 0.06 0.80 5.43 -3.77 -0.02 0.78 16 12 N -0.53 -8.03 4.58 -234.48 -1.07 -9.10 16 13 C 0.06 0.95 5.39 -3.83 -0.02 0.93 16 14 C 0.07 1.30 6.13 37.16 0.23 1.53 16 15 O -0.38 -9.36 10.27 -35.23 -0.36 -9.73 16 16 C 0.19 5.45 5.69 36.00 0.20 5.65 16 17 C -0.51 -15.27 9.43 -34.44 -0.32 -15.60 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 21 Si 0.91 22.23 29.54 -169.99 -5.02 17.21 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.06 0.78 5.57 -3.77 -0.02 0.76 16 26 C 0.06 0.77 5.36 -3.77 -0.02 0.75 16 27 C -0.15 -1.78 8.58 -39.25 -0.34 -2.11 16 28 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.14 0.76 6.29 -52.49 -0.33 0.43 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.06 0.81 7.24 -51.93 -0.38 0.43 16 34 H 0.08 0.95 8.13 -51.92 -0.42 0.53 16 35 H 0.09 1.22 6.72 -51.93 -0.35 0.87 16 36 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 38 H 0.04 0.54 8.00 -51.93 -0.42 0.13 16 39 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.03 0.64 6.74 -51.92 -0.35 0.29 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 1.05 8.00 -51.93 -0.42 0.64 16 46 H 0.06 0.75 7.44 -51.93 -0.39 0.36 16 47 H 0.08 0.88 8.13 -51.92 -0.42 0.46 16 48 H 0.14 1.80 7.06 -52.49 -0.37 1.42 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -33.73 390.94 -9.45 -43.18 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.54 Total: -4.01 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -1.13 Total: -4.62 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: -1.11 Total: -42.91 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.57 Total: -13.15 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.73 -9.45 -43.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339118206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.721 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds