Wall clock time and date at job start Tue Mar 31 2020 21:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35942 * 117.00284 * 2 1 4 4 C 1.38745 * 119.99847 * 359.97438 * 3 2 1 5 5 C 1.38242 * 120.10478 * 179.97438 * 4 3 2 6 6 C 1.38277 * 120.10072 * 359.72704 * 5 4 3 7 7 F 1.35097 * 120.00142 * 180.29329 * 6 5 4 8 8 C 1.39088 * 119.99869 * 0.57306 * 6 5 4 9 9 N 1.39827 * 120.05299 * 179.69772 * 8 6 5 10 10 C 1.46956 * 111.00362 * 119.72762 * 9 8 6 11 11 C 1.53048 * 109.36902 * 183.18873 * 10 9 8 12 12 N 1.46952 * 109.36498 * 301.60229 * 11 10 9 13 13 C 1.46893 * 110.99937 * 183.18986 * 12 11 10 14 14 C 1.52996 * 109.47576 * 75.70386 * 13 12 11 15 15 O 1.42896 * 109.47551 * 64.64134 * 14 13 12 16 16 C 1.42902 * 114.00447 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47135 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00350 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99867 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00227 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99916 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46845 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46916 * 120.00114 * 21 19 17 24 24 H 1.48504 * 109.46797 * 239.99953 * 21 19 17 25 25 C 1.46953 * 110.88602 * 59.31419 * 12 11 10 26 26 C 1.46954 * 111.00291 * 243.52727 * 9 8 6 27 27 C 1.38605 * 119.99817 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47257 * 300.00143 * 1 2 3 29 29 H 1.08999 * 109.47081 * 60.00279 * 1 2 3 30 30 H 1.08994 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.94653 * 0.02975 * 4 3 2 32 32 H 1.07995 * 119.94766 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.48844 * 63.21629 * 10 9 8 34 34 H 1.09008 * 109.48594 * 303.15655 * 10 9 8 35 35 H 1.08997 * 109.48916 * 181.62348 * 11 10 9 36 36 H 1.08999 * 109.50356 * 61.57577 * 11 10 9 37 37 H 1.09002 * 109.47245 * 195.70517 * 13 12 11 38 38 H 1.09002 * 109.47337 * 315.69695 * 13 12 11 39 39 H 1.09000 * 109.47760 * 184.64705 * 14 13 12 40 40 H 1.09008 * 109.46969 * 304.64498 * 14 13 12 41 41 H 1.08998 * 109.47177 * 300.00379 * 16 15 14 42 42 H 1.09004 * 109.46830 * 60.00256 * 16 15 14 43 43 H 0.97005 * 120.00361 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.48610 * 60.64759 * 25 12 11 45 45 H 1.08996 * 109.49541 * 180.71519 * 25 12 11 46 46 H 1.09001 * 109.49117 * 296.77861 * 26 9 8 47 47 H 1.09007 * 109.49141 * 56.82383 * 26 9 8 48 48 H 1.07998 * 120.05642 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2906 2.3749 -0.0005 5 6 1.9159 3.6077 0.0000 6 6 3.2965 3.6850 0.0068 7 9 3.9056 4.8909 0.0133 8 6 4.0582 2.5213 0.0010 9 7 5.4544 2.5982 0.0015 10 6 6.0176 1.9419 1.1896 11 6 7.5381 2.1168 1.1932 12 7 8.0976 1.5413 -0.0378 13 6 9.5643 1.6220 -0.0373 14 6 10.1336 0.5545 0.8993 15 8 9.8195 -0.7430 0.3896 16 6 10.3080 -1.8177 1.1949 17 6 9.9221 -3.1319 0.5663 18 1 9.3597 -3.1451 -0.3555 19 6 10.2861 -4.3174 1.1688 20 7 10.9704 -4.3014 2.2917 21 14 9.8071 -5.9465 0.3901 22 1 9.0456 -5.6929 -0.8593 23 1 11.0326 -6.7235 0.0745 24 1 8.9618 -6.7180 1.3365 25 6 7.5344 2.1974 -1.2260 26 6 6.0140 2.0226 -1.2295 27 6 3.4303 1.2837 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2121 2.3174 -0.0005 32 1 1.3253 4.5119 -0.0008 33 1 5.7738 0.8798 1.1683 34 1 5.5975 2.3939 2.0882 35 1 7.9608 1.6061 2.0583 36 1 7.7823 3.1779 1.2421 37 1 9.9378 1.4554 -1.0477 38 1 9.8738 2.6092 0.3061 39 1 11.2159 0.6674 0.9638 40 1 9.6965 0.6709 1.8911 41 1 11.3938 -1.7542 1.2658 42 1 9.8741 -1.7504 2.1926 43 1 11.2262 -5.1355 2.7158 44 1 7.7782 3.2596 -1.2047 45 1 7.9545 1.7455 -2.1245 46 1 5.7701 0.9613 -1.2783 47 1 5.5909 2.5331 -2.0947 48 1 4.0194 0.3784 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339118206.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:45 Heat of formation + Delta-G solvation = -102.059714 kcal Electronic energy + Delta-G solvation = -29423.703872 eV Core-core repulsion = 25200.167146 eV Total energy + Delta-G solvation = -4223.536726 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.70379 -41.51400 -40.39640 -38.85747 -37.98488 -36.19465 -34.86682 -32.18766 -31.97896 -31.22067 -29.99438 -28.81286 -28.03148 -26.49161 -24.76532 -24.46986 -24.05658 -22.81806 -22.34227 -20.76811 -19.31430 -18.61767 -18.32055 -17.93241 -17.58771 -17.38014 -16.92132 -16.65764 -16.42180 -16.35556 -15.85661 -15.82188 -15.76948 -15.61228 -15.29722 -15.14602 -14.93594 -14.66620 -14.02105 -13.78363 -13.75145 -13.48448 -13.37674 -13.17625 -13.07601 -12.95135 -12.72197 -12.60878 -12.52576 -12.33630 -12.16521 -12.05914 -11.82685 -11.73704 -11.54174 -11.21522 -10.85257 -10.16124 -10.06814 -9.77049 -9.19349 -9.13098 -8.31620 -6.43251 -0.02872 0.15691 1.38847 1.40565 1.55454 2.24526 2.35134 2.42635 2.58720 2.87029 3.01896 3.26497 3.31852 3.64017 3.76979 3.92985 3.98272 4.10105 4.13339 4.19581 4.25403 4.32250 4.37132 4.41370 4.41617 4.42033 4.48494 4.55142 4.59933 4.65587 4.73727 4.75812 4.82639 4.83368 4.87816 4.96800 4.98537 5.02233 5.10726 5.15566 5.20509 5.49049 5.56269 5.67860 5.98178 6.03447 6.14902 6.18288 6.35374 6.58496 6.88388 7.29137 8.81047 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010621 B = 0.002757 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2635.775761 B =10153.430082 C =12255.707052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.338 6.338 3 C 0.123 3.877 4 C -0.172 4.172 5 C -0.099 4.099 6 C 0.068 3.932 7 F -0.140 7.140 8 C 0.085 3.915 9 N -0.500 5.500 10 C 0.067 3.933 11 C 0.063 3.937 12 N -0.553 5.553 13 C 0.072 3.928 14 C 0.060 3.940 15 O -0.395 6.395 16 C 0.210 3.790 17 C -0.543 4.543 18 H 0.059 0.941 19 C 0.005 3.995 20 N -0.931 5.931 21 Si 0.982 3.018 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.271 1.271 25 C 0.065 3.935 26 C 0.066 3.934 27 C -0.169 4.169 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.035 0.965 41 H -0.016 1.016 42 H -0.020 1.020 43 H 0.270 0.730 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.035 0.965 47 H 0.093 0.907 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.235 18.399 -5.247 29.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.252 6.252 3 C 0.076 3.924 4 C -0.191 4.191 5 C -0.118 4.118 6 C 0.048 3.952 7 F -0.118 7.118 8 C -0.010 4.010 9 N -0.222 5.222 10 C -0.060 4.060 11 C -0.065 4.065 12 N -0.279 5.279 13 C -0.055 4.055 14 C -0.018 4.018 15 O -0.314 6.314 16 C 0.135 3.865 17 C -0.581 4.581 18 H 0.077 0.923 19 C -0.193 4.193 20 N -0.571 5.571 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.063 4.063 26 C -0.061 4.061 27 C -0.190 4.190 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.190 0.810 32 H 0.188 0.812 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.002 0.998 42 H -0.002 1.002 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.054 0.946 47 H 0.111 0.889 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -22.120 18.114 -5.292 29.076 hybrid contribution 0.415 -0.715 0.379 0.909 sum -21.704 17.400 -4.913 28.248 Atomic orbital electron populations 1.23428 0.75846 1.05731 1.02879 1.86123 1.24036 1.26641 1.88413 1.19003 0.91557 0.85485 0.96326 1.21426 1.01897 0.90056 1.05687 1.21192 0.91370 1.00113 0.99161 1.17632 0.90953 0.79358 1.07307 1.91463 1.83961 1.42216 1.94178 1.18597 0.89531 0.91194 1.01684 1.59938 1.01823 1.56699 1.03740 1.22185 0.94558 0.96808 0.92407 1.22130 0.93471 0.97971 0.92969 1.61945 1.06215 1.56958 1.02746 1.22032 0.86823 0.96104 1.00587 1.22572 0.97902 0.84458 0.96861 1.87890 1.78836 1.13906 1.50803 1.19765 0.91808 0.85279 0.89635 1.21399 1.36091 0.90941 1.09656 0.92318 1.25958 0.94528 1.03452 0.95361 1.70077 1.39069 1.28920 1.19043 0.85155 0.78423 0.77394 0.78544 1.18962 1.19458 1.19665 1.22134 0.93307 0.97487 0.93327 1.22239 0.94725 0.97725 0.91368 1.20829 0.93138 0.97966 1.07068 0.90951 0.90824 0.86873 0.81045 0.81169 0.94804 0.89309 0.90726 0.92969 0.89967 0.90850 0.93445 0.94687 0.99843 1.00224 0.92085 0.93122 0.89456 0.94618 0.88896 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.34 -6.75 10.50 -92.90 -0.98 -7.72 16 3 C 0.12 2.48 6.68 22.48 0.15 2.63 16 4 C -0.17 -2.40 9.04 22.39 0.20 -2.19 16 5 C -0.10 -1.48 10.01 22.28 0.22 -1.26 16 6 C 0.07 1.46 7.31 22.48 0.16 1.62 16 7 F -0.14 -3.35 17.07 44.97 0.77 -2.58 16 8 C 0.09 2.07 4.73 38.20 0.18 2.25 16 9 N -0.50 -12.94 4.51 -694.58 -3.14 -16.07 16 10 C 0.07 1.82 5.31 86.31 0.46 2.28 16 11 C 0.06 1.74 5.43 86.31 0.47 2.21 16 12 N -0.55 -17.01 4.58 -895.77 -4.11 -21.11 16 13 C 0.07 2.15 5.39 86.30 0.46 2.62 16 14 C 0.06 2.28 6.13 71.98 0.44 2.72 16 15 O -0.39 -20.12 10.27 -148.98 -1.53 -21.65 16 16 C 0.21 12.29 5.69 71.24 0.41 12.70 16 17 C -0.54 -33.55 9.43 25.60 0.24 -33.30 16 18 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 21 Si 0.98 45.66 29.54 68.60 2.03 47.69 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 25 C 0.07 1.67 5.57 86.31 0.48 2.15 16 26 C 0.07 1.67 5.36 86.31 0.46 2.14 16 27 C -0.17 -4.14 8.58 22.49 0.19 -3.95 16 28 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 29 H 0.07 0.44 7.66 -2.39 -0.02 0.42 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.17 1.14 6.29 -2.91 -0.02 1.13 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.03 1.06 7.24 -2.39 -0.02 1.04 16 34 H 0.09 2.19 8.13 -2.38 -0.02 2.17 16 35 H 0.07 2.20 6.72 -2.39 -0.02 2.18 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 2.41 7.85 -2.39 -0.02 2.39 16 38 H 0.07 1.75 8.00 -2.39 -0.02 1.73 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 1.33 6.74 -2.38 -0.02 1.32 16 41 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 42 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 43 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.09 2.15 8.00 -2.39 -0.02 2.13 16 46 H 0.04 1.04 7.44 -2.39 -0.02 1.02 16 47 H 0.09 2.07 8.13 -2.38 -0.02 2.05 16 48 H 0.12 3.39 7.06 -2.91 -0.02 3.37 16 Total: -1.00 -74.50 390.94 0.39 -74.10 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.95 Total: 9.77 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 6.11 Total: -5.38 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -6.96 Total: -94.24 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.50 Total: -29.37 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.77 Total: -2.58 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.50 0.39 -74.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339118206.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.955 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds