Wall clock time and date at job start Tue Mar 31 2020 21:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46500 * 120.00074 * 2 1 4 4 C 1.52996 * 109.46993 * 89.99770 * 3 2 1 5 5 C 1.53002 * 109.46969 * 179.97438 * 4 3 2 6 6 O 1.42905 * 109.47079 * 179.97438 * 5 4 3 7 7 C 1.35950 * 116.99802 * 180.02562 * 6 5 4 8 8 C 1.38708 * 120.03026 * 359.72477 * 7 6 5 9 9 C 1.38148 * 119.96893 * 179.78884 * 8 7 6 10 10 C 1.38453 * 120.02995 * 0.48957 * 9 8 7 11 11 F 1.35097 * 119.97318 * 179.72219 * 10 9 8 12 12 C 1.38459 * 120.05793 * 359.74257 * 10 9 8 13 13 C 1.38144 * 120.03434 * 0.02562 * 12 10 9 14 14 C 1.34784 * 119.99864 * 179.97438 * 2 1 3 15 15 O 1.21277 * 119.99601 * 180.02562 * 14 2 1 16 16 C 1.50699 * 120.00056 * 0.02562 * 14 2 1 17 17 H 1.09002 * 109.46799 * 39.99898 * 16 14 2 18 18 N 1.46895 * 109.47239 * 159.99979 * 16 14 2 19 19 C 1.53003 * 109.47137 * 280.00236 * 16 14 2 20 20 C 1.53000 * 109.46846 * 175.00279 * 19 16 14 21 21 C 1.50704 * 109.46543 * 179.97438 * 20 19 16 22 22 H 1.07993 * 120.00688 * 359.97438 * 21 20 19 23 23 C 1.37883 * 119.99640 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99984 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00055 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46758 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47155 * 119.99719 * 25 23 21 28 28 H 1.48502 * 109.47102 * 239.99920 * 25 23 21 29 29 H 1.09002 * 109.47156 * 90.00140 * 1 2 3 30 30 H 1.09002 * 109.47201 * 210.00104 * 1 2 3 31 31 H 1.08995 * 109.47256 * 330.00648 * 1 2 3 32 32 H 1.08996 * 109.47197 * 329.99399 * 3 2 1 33 33 H 1.09000 * 109.47175 * 209.99640 * 3 2 1 34 34 H 1.09004 * 109.47298 * 60.00068 * 4 3 2 35 35 H 1.09004 * 109.47552 * 299.99940 * 4 3 2 36 36 H 1.09004 * 109.46930 * 59.99996 * 5 4 3 37 37 H 1.09000 * 109.47312 * 299.99939 * 5 4 3 38 38 H 1.08003 * 120.01532 * 0.02562 * 8 7 6 39 39 H 1.08004 * 119.98636 * 180.21131 * 9 8 7 40 40 H 1.08006 * 119.98069 * 180.02562 * 12 10 9 41 41 H 1.08001 * 120.02084 * 179.97438 * 13 12 10 42 42 H 1.00902 * 110.99941 * 59.99566 * 18 16 14 43 43 H 1.00898 * 111.00548 * 183.95310 * 18 16 14 44 44 H 1.09006 * 109.47037 * 294.99787 * 19 16 14 45 45 H 1.09001 * 109.47541 * 54.99900 * 19 16 14 46 46 H 1.09000 * 109.46821 * 299.99175 * 20 19 16 47 47 H 1.08988 * 109.47454 * 59.99789 * 20 19 16 48 48 H 0.96995 * 120.00069 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 1.4425 5 6 3.2180 3.0351 1.4425 6 8 3.4556 3.4479 2.7898 7 6 4.1294 4.6152 2.9679 8 6 4.5576 5.3443 1.8683 9 6 5.2384 6.5324 2.0507 10 6 5.5022 6.9904 3.3304 11 9 6.1730 8.1497 3.5074 12 6 5.0796 6.2612 4.4288 13 6 4.3944 5.0752 4.2494 14 6 2.1388 -1.1673 0.0005 15 8 3.3516 -1.1672 0.0010 16 6 1.3853 -2.4724 0.0005 17 1 0.5221 -2.3935 -0.6604 18 7 2.2677 -3.5473 -0.4726 19 6 0.9128 -2.7884 1.4210 20 6 0.0429 -4.0470 1.4009 21 6 -0.4220 -4.3586 2.8001 22 1 -0.1263 -3.7230 3.6216 23 6 -1.2249 -5.4554 3.0315 24 7 -1.5855 -6.2292 2.0311 25 14 -1.8006 -5.8421 4.7660 26 1 -1.2613 -4.8257 5.7047 27 1 -3.2847 -5.8192 4.8116 28 1 -1.3140 -7.1886 5.1604 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6085 2.0283 -0.5139 33 1 3.1499 1.1384 -0.5138 34 1 3.0415 0.9507 1.9564 35 1 1.5000 1.8408 1.9563 36 1 2.6293 3.7949 0.9284 37 1 4.1704 2.9043 0.9288 38 1 4.3556 4.9851 0.8700 39 1 5.5690 7.1020 1.1947 40 1 5.2857 6.6199 5.4266 41 1 4.0652 4.5063 5.1064 42 1 3.0761 -3.6404 0.1240 43 1 1.7678 -4.4208 -0.5431 44 1 1.7778 -2.9549 2.0631 45 1 0.3309 -1.9507 1.8053 46 1 -0.8221 -3.8804 0.7589 47 1 0.6247 -4.8847 1.0166 48 1 -2.1506 -7.0005 2.1938 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424096415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:27 Heat of formation + Delta-G solvation = -125.688924 kcal Electronic energy + Delta-G solvation = -28136.090251 eV Core-core repulsion = 23911.528885 eV Total energy + Delta-G solvation = -4224.561366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.84100 -41.27919 -41.01575 -38.42076 -37.29876 -36.84842 -34.87397 -33.71479 -32.22541 -31.69709 -30.37146 -28.64724 -27.91236 -26.87475 -25.26218 -24.15692 -23.26830 -22.45922 -22.07960 -20.15279 -19.31583 -18.81834 -18.39552 -18.20504 -17.67948 -17.26818 -17.13217 -16.57791 -16.51821 -16.27964 -15.87415 -15.76678 -15.56630 -15.17642 -14.92080 -14.79942 -14.61503 -14.47527 -14.15378 -14.04295 -13.73876 -13.61542 -13.47944 -13.34512 -13.19546 -13.09879 -12.84502 -12.65101 -12.57084 -12.50189 -12.14605 -11.78112 -11.77575 -11.70143 -11.54530 -11.28392 -10.68460 -10.56050 -10.21160 -9.74313 -9.62568 -9.14246 -8.21685 -6.31696 0.13842 0.17170 1.38142 1.40198 1.51337 1.55882 1.85896 2.26391 2.39741 2.54281 3.12080 3.30674 3.52620 3.66341 3.74753 3.79011 3.87681 3.97027 4.08143 4.11605 4.14596 4.23886 4.27705 4.34220 4.34479 4.38764 4.57852 4.61785 4.63577 4.75620 4.81191 4.88477 4.94900 4.99891 5.09546 5.10761 5.12430 5.13159 5.22378 5.47346 5.56938 5.65292 5.68947 5.80912 6.04344 6.21038 6.34042 6.35065 6.46439 6.83709 7.15704 7.37433 8.89092 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.001837 C = 0.001688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.216328 B =15237.491432 C =16584.306765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.612 5.612 3 C 0.120 3.880 4 C -0.129 4.129 5 C 0.063 3.937 6 O -0.330 6.330 7 C 0.110 3.890 8 C -0.182 4.182 9 C -0.112 4.112 10 C 0.037 3.963 11 F -0.150 7.150 12 C -0.113 4.113 13 C -0.136 4.136 14 C 0.523 3.477 15 O -0.570 6.570 16 C 0.080 3.920 17 H 0.109 0.891 18 N -0.831 5.831 19 C -0.121 4.121 20 C 0.031 3.969 21 C -0.543 4.543 22 H 0.053 0.947 23 C 0.007 3.993 24 N -0.925 5.925 25 Si 0.957 3.043 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.281 1.281 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.343 0.657 43 H 0.352 0.648 44 H 0.040 0.960 45 H 0.069 0.931 46 H 0.005 0.995 47 H 0.001 0.999 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.045 26.738 -2.829 28.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.345 5.345 3 C -0.002 4.002 4 C -0.168 4.168 5 C -0.012 4.012 6 O -0.244 6.244 7 C 0.064 3.936 8 C -0.200 4.200 9 C -0.131 4.131 10 C 0.018 3.982 11 F -0.129 7.129 12 C -0.131 4.131 13 C -0.155 4.155 14 C 0.312 3.688 15 O -0.448 6.448 16 C -0.035 4.035 17 H 0.126 0.874 18 N -0.362 5.362 19 C -0.161 4.161 20 C -0.006 4.006 21 C -0.581 4.581 22 H 0.072 0.928 23 C -0.192 4.192 24 N -0.565 5.565 25 Si 0.782 3.218 26 H -0.191 1.191 27 H -0.202 1.202 28 H -0.207 1.207 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.177 0.823 39 H 0.175 0.825 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.155 0.845 43 H 0.167 0.833 44 H 0.058 0.942 45 H 0.087 0.913 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.587 26.935 -3.416 28.476 hybrid contribution -0.399 -0.960 1.763 2.047 sum 8.189 25.974 -1.653 27.284 Atomic orbital electron populations 1.22197 0.77320 1.04764 1.03602 1.47840 1.08304 1.05249 1.73118 1.21393 0.98434 0.84992 0.95372 1.21815 1.01136 0.95427 0.98411 1.22845 1.00839 0.96539 0.80956 1.86084 1.71041 1.36311 1.30933 1.19296 0.93302 0.86207 0.94754 1.21383 1.02916 0.96256 0.99474 1.21202 0.98768 0.96756 0.96365 1.17844 1.00381 0.84958 0.95062 1.91471 1.78474 1.46615 1.96321 1.21164 0.98158 0.94285 0.99503 1.20516 1.02036 0.97124 0.95810 1.20785 0.87470 0.86104 0.74479 1.90609 1.15421 1.87854 1.50961 1.21436 0.95524 0.89796 0.96733 0.87358 1.58776 1.10910 1.09443 1.57077 1.22167 0.99282 0.99891 0.94716 1.18964 0.93844 0.92108 0.95716 1.21629 1.30717 1.10862 0.94912 0.92848 1.25838 0.96320 0.96089 1.00956 1.70060 1.37030 1.16703 1.32703 0.85517 0.78165 0.78064 0.80018 1.19095 1.20178 1.20671 0.90433 0.91319 0.88262 0.86288 0.90748 0.93649 0.90136 0.88789 0.90961 0.82279 0.82533 0.82402 0.83456 0.84456 0.83291 0.94157 0.91268 0.97664 0.98051 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.12 9.85 127.77 1.26 2.38 16 2 N -0.61 -14.14 2.87 -846.78 -2.43 -16.57 16 3 C 0.12 2.09 5.41 86.38 0.47 2.56 16 4 C -0.13 -2.37 5.91 30.59 0.18 -2.19 16 5 C 0.06 0.90 4.74 71.98 0.34 1.25 16 6 O -0.33 -6.44 10.14 -92.99 -0.94 -7.38 16 7 C 0.11 1.91 6.69 22.49 0.15 2.06 16 8 C -0.18 -2.47 9.04 22.36 0.20 -2.27 16 9 C -0.11 -1.52 10.02 22.30 0.22 -1.30 16 10 C 0.04 0.59 7.30 22.37 0.16 0.76 16 11 F -0.15 -2.69 17.27 44.97 0.78 -1.92 16 12 C -0.11 -1.65 10.02 22.30 0.22 -1.43 16 13 C -0.14 -2.21 9.98 22.36 0.22 -1.98 16 14 C 0.52 16.64 6.93 87.66 0.61 17.25 16 15 O -0.57 -21.66 15.83 -3.02 -0.05 -21.70 16 16 C 0.08 2.66 2.37 44.17 0.10 2.77 16 17 H 0.11 3.33 7.21 -2.39 -0.02 3.32 16 18 N -0.83 -28.70 8.94 -171.81 -1.54 -30.24 16 19 C -0.12 -4.65 4.45 30.60 0.14 -4.51 16 20 C 0.03 1.49 4.74 29.85 0.14 1.63 16 21 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 22 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 23 C 0.01 0.36 5.46 84.66 0.46 0.82 16 24 N -0.93 -53.55 13.29 21.45 0.28 -53.26 16 25 Si 0.96 43.02 29.54 68.60 2.03 45.05 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.53 4.83 -2.39 -0.01 1.52 16 31 H 0.10 1.22 8.07 -2.39 -0.02 1.20 16 32 H 0.12 1.13 8.07 -2.39 -0.02 1.11 16 33 H 0.07 1.51 7.42 -2.39 -0.02 1.49 16 34 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.09 0.80 7.67 -2.38 -0.02 0.78 16 37 H 0.07 0.95 7.65 -2.39 -0.02 0.93 16 38 H 0.16 1.39 6.30 -2.91 -0.02 1.37 16 39 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 40 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 41 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.34 12.17 8.58 -89.69 -0.77 11.40 16 43 H 0.35 12.28 7.55 -89.70 -0.68 11.61 16 44 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 45 H 0.07 2.50 6.43 -2.39 -0.02 2.48 16 46 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.00 0.06 6.87 -2.39 -0.02 0.05 16 48 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -69.92 398.78 2.79 -67.14 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: -0.46 Total: 30.34 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 5.12 Total: -11.45 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -3.68 Total: -100.07 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.99 Total: -29.08 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -69.92 2.79 -67.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424096415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.554 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds