Wall clock time and date at job start Tue Mar 31 2020 21:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99661 * 2 1 4 4 C 1.46894 * 111.00088 * 123.95297 * 2 1 3 5 5 C 1.52995 * 109.47357 * 170.00361 * 4 2 1 6 6 C 1.53002 * 109.47427 * 180.02562 * 5 4 2 7 7 N 1.46499 * 109.47088 * 179.97438 * 6 5 4 8 8 C 1.46506 * 119.99537 * 269.99330 * 7 6 5 9 9 C 1.50699 * 109.47106 * 270.00004 * 8 7 6 10 10 H 1.07999 * 120.00463 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99855 * 180.02562 * 9 8 7 12 12 N 1.31506 * 119.99824 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99715 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47172 * 90.00201 * 13 11 9 15 15 H 1.48505 * 109.46881 * 209.99904 * 13 11 9 16 16 H 1.48497 * 109.47562 * 329.99812 * 13 11 9 17 17 C 1.34777 * 120.00199 * 89.99979 * 7 6 5 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 7 6 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 7 6 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 7 21 21 C 1.38264 * 119.93461 * 269.72057 * 20 19 17 22 22 C 1.38179 * 120.09375 * 179.77027 * 21 20 19 23 23 C 1.38655 * 119.96828 * 0.50833 * 22 21 20 24 24 O 1.35961 * 120.06527 * 179.72648 * 23 22 21 25 25 C 1.38908 * 119.87626 * 359.74529 * 23 22 21 26 26 F 1.35102 * 120.04855 * 179.97438 * 25 23 22 27 27 C 1.38250 * 119.93793 * 90.00078 * 20 19 17 28 28 H 1.08996 * 109.47186 * 296.04682 * 1 2 3 29 29 H 1.09006 * 109.47446 * 56.04651 * 1 2 3 30 30 H 1.09000 * 109.47243 * 176.04502 * 1 2 3 31 31 H 1.09002 * 109.47006 * 183.95504 * 3 2 1 32 32 H 1.09000 * 109.46986 * 303.95089 * 3 2 1 33 33 H 1.08994 * 109.47119 * 63.95373 * 3 2 1 34 34 H 1.09006 * 109.47229 * 49.99881 * 4 2 1 35 35 H 1.09005 * 109.46948 * 290.00086 * 4 2 1 36 36 H 1.08999 * 109.46986 * 59.99459 * 5 4 2 37 37 H 1.09005 * 109.46868 * 299.99774 * 5 4 2 38 38 H 1.09001 * 109.46980 * 59.99515 * 6 5 4 39 39 H 1.09005 * 109.46685 * 299.99608 * 6 5 4 40 40 H 1.08994 * 109.46996 * 30.00327 * 8 7 6 41 41 H 1.09001 * 109.46578 * 150.00190 * 8 7 6 42 42 H 0.97009 * 119.99797 * 179.97438 * 12 11 9 43 43 H 1.09004 * 109.46965 * 299.72211 * 19 17 7 44 44 H 1.08994 * 109.46990 * 59.72065 * 19 17 7 45 45 H 1.08002 * 119.95263 * 0.02562 * 21 20 19 46 46 H 1.07997 * 120.01636 * 180.25143 * 22 21 20 47 47 H 0.96703 * 113.99576 * 270.02356 * 24 23 22 48 48 H 1.08005 * 119.98588 * 359.95352 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.5044 -0.9552 0.9704 6 6 4.0527 -1.7535 2.1549 7 7 5.4974 -1.9353 1.9944 8 6 6.0136 -3.1066 1.2817 9 6 6.2352 -4.2320 2.2591 10 1 6.0134 -4.0894 3.3063 11 6 6.7212 -5.4440 1.8162 12 7 6.9141 -6.4262 2.6691 13 14 7.1056 -5.6905 0.0049 14 1 8.5168 -5.3102 -0.2578 15 1 6.9023 -7.1170 -0.3545 16 1 6.2034 -4.8406 -0.8128 17 6 6.3517 -1.0251 2.5026 18 8 5.9243 -0.0553 3.0924 19 6 7.8377 -1.2089 2.3322 20 6 8.5638 -0.0587 2.9809 21 6 8.8584 1.0743 2.2451 22 6 9.5198 2.1328 2.8379 23 6 9.8981 2.0548 4.1695 24 8 10.5539 3.0930 4.7532 25 6 9.6062 0.9139 4.9061 26 9 9.9737 0.8339 6.2037 27 6 8.9392 -0.1407 4.3089 28 1 -0.3633 0.4512 0.9232 29 1 -0.3634 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9163 -0.8525 33 1 1.7043 1.8723 0.9232 34 1 1.5089 -1.7406 1.1756 35 1 1.7975 -0.2246 2.0628 36 1 3.9908 0.0195 0.9323 37 1 3.7024 -1.4965 0.0452 38 1 3.5661 -2.7282 2.1925 39 1 3.8547 -1.2126 3.0803 40 1 5.2931 -3.4184 0.5257 41 1 6.9580 -2.8519 0.8005 42 1 7.2557 -7.2790 2.3575 43 1 8.1445 -2.1435 2.8019 44 1 8.0806 -1.2393 1.2701 45 1 8.5674 1.1336 1.2067 46 1 9.7456 3.0188 2.2631 47 1 11.5168 3.0401 4.6814 48 1 8.7113 -1.0283 4.8805 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448802392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:22 Heat of formation + Delta-G solvation = -96.268824 kcal Electronic energy + Delta-G solvation = -29414.165690 eV Core-core repulsion = 25190.880075 eV Total energy + Delta-G solvation = -4223.285615 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.78357 -39.91593 -39.01962 -37.68016 -36.89242 -35.28442 -32.99946 -32.13986 -31.30089 -30.56586 -28.07454 -27.66341 -27.35500 -25.51862 -22.98974 -22.77972 -22.63635 -21.55168 -20.68842 -18.65749 -18.43846 -17.13452 -16.85833 -16.65206 -16.52195 -15.95406 -15.83954 -15.44660 -15.16788 -15.02913 -14.75669 -14.50997 -14.13134 -13.94132 -13.87651 -13.84576 -13.27053 -13.08533 -12.63204 -12.48537 -12.44744 -12.22746 -12.07654 -11.87934 -11.77375 -11.68128 -11.52815 -11.41795 -11.34221 -11.21388 -10.85815 -10.74398 -10.61697 -10.35217 -10.24086 -9.68725 -9.27764 -8.85043 -8.78006 -8.42725 -8.41142 -7.83263 -6.27079 -4.29726 1.07682 1.21858 3.13193 3.21982 3.23430 3.24782 3.40288 3.74676 3.94252 4.05559 4.21633 4.33614 4.74633 4.83547 4.99694 5.03995 5.08251 5.21070 5.22541 5.28015 5.31938 5.34255 5.50436 5.57173 5.59629 5.63594 5.70954 5.74026 5.74437 5.84979 5.93204 5.98597 5.99415 6.09482 6.14502 6.19552 6.36993 6.40002 6.52636 6.57417 6.63897 6.76041 6.97033 6.99278 7.26782 7.38330 7.49042 8.04830 8.34119 8.76029 8.85272 9.31917 10.85349 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.006719 B = 0.003960 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4166.393090 B = 7068.426239 C =10288.585889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.058 3.942 5 C -0.129 4.129 6 C 0.122 3.878 7 N -0.588 5.588 8 C 0.207 3.793 9 C -0.544 4.544 10 H 0.078 0.922 11 C 0.078 3.922 12 N -0.889 5.889 13 Si 0.870 3.130 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.522 3.478 18 O -0.562 6.562 19 C -0.106 4.106 20 C -0.028 4.028 21 C -0.103 4.103 22 C -0.116 4.116 23 C 0.061 3.939 24 O -0.490 6.490 25 C 0.075 3.925 26 F -0.136 7.136 27 C -0.124 4.124 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.030 0.970 42 H 0.267 0.733 43 H 0.121 0.879 44 H 0.102 0.898 45 H 0.131 0.869 46 H 0.136 0.864 47 H 0.387 0.613 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.028 14.006 -4.751 14.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.070 4.070 5 C -0.168 4.168 6 C -0.002 4.002 7 N -0.318 5.318 8 C 0.086 3.914 9 C -0.583 4.583 10 H 0.096 0.904 11 C -0.126 4.126 12 N -0.526 5.526 13 Si 0.696 3.304 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.187 1.187 17 C 0.310 3.690 18 O -0.442 6.442 19 C -0.146 4.146 20 C -0.029 4.029 21 C -0.121 4.121 22 C -0.135 4.135 23 C 0.016 3.984 24 O -0.299 6.299 25 C 0.055 3.945 26 F -0.115 7.115 27 C -0.143 4.143 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.054 0.946 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.139 0.861 44 H 0.121 0.879 45 H 0.149 0.851 46 H 0.153 0.847 47 H 0.242 0.758 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -0.598 14.246 -4.675 15.005 hybrid contribution 0.483 -0.264 -0.026 0.551 sum -0.115 13.982 -4.702 14.752 Atomic orbital electron populations 1.22371 0.87592 1.02205 1.00196 1.61980 1.07568 1.13970 1.43697 1.22425 1.01401 0.88716 1.00077 1.22082 0.95912 0.98115 0.90936 1.21951 0.93897 1.01121 0.99824 1.21230 0.80885 1.00368 0.97690 1.47861 1.05389 1.23534 1.55009 1.19846 0.94796 0.83700 0.93066 1.21375 1.45154 0.95516 0.96216 0.90357 1.24877 0.94646 0.95647 0.97465 1.69889 1.44452 1.03750 1.34540 0.86945 0.79476 0.78208 0.85749 1.19801 1.20878 1.18748 1.20184 0.88161 0.82190 0.78438 1.90644 1.79374 1.30819 1.43408 1.20759 0.92454 0.98456 1.02896 1.19361 0.95491 0.95256 0.92751 1.20956 0.98325 0.92353 1.00485 1.21193 1.00038 0.99305 0.92957 1.18369 1.01369 0.87084 0.91619 1.84888 1.23339 1.43057 1.78665 1.18032 1.02065 0.95039 0.79330 1.91480 1.89718 1.96572 1.33700 1.21027 0.99075 0.98693 0.95473 0.95831 0.91614 0.91325 0.90917 0.91764 0.95716 0.90536 0.94703 0.91803 0.91047 0.90144 0.90889 0.94622 0.95220 0.92296 0.86089 0.87938 0.85071 0.84650 0.75783 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 60.07 0.57 0.82 16 2 N -0.55 -6.74 5.02 -251.26 -1.26 -8.00 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.06 0.75 4.96 -3.83 -0.02 0.73 16 5 C -0.13 -1.91 5.46 -26.73 -0.15 -2.06 16 6 C 0.12 2.09 5.41 -4.04 -0.02 2.07 16 7 N -0.59 -11.22 2.46 -175.05 -0.43 -11.65 16 8 C 0.21 4.26 4.04 -5.19 -0.02 4.24 16 9 C -0.54 -13.58 9.86 -34.44 -0.34 -13.92 16 10 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 11 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 12 N -0.89 -25.01 13.96 55.43 0.77 -24.23 16 13 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 14 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 17 C 0.52 9.91 7.67 -10.98 -0.08 9.83 16 18 O -0.56 -11.87 15.61 5.55 0.09 -11.78 16 19 C -0.11 -1.72 4.38 -29.03 -0.13 -1.85 16 20 C -0.03 -0.42 4.37 -104.61 -0.46 -0.88 16 21 C -0.10 -1.35 9.69 -39.59 -0.38 -1.73 16 22 C -0.12 -1.42 9.98 -39.45 -0.39 -1.81 16 23 C 0.06 0.83 6.71 -39.18 -0.26 0.56 16 24 O -0.49 -5.84 13.37 -19.62 -0.26 -6.10 16 25 C 0.08 1.14 7.31 -39.30 -0.29 0.86 16 26 F -0.14 -2.15 17.11 2.25 0.04 -2.11 16 27 C -0.12 -1.94 9.67 -39.54 -0.38 -2.32 16 28 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 31 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 32 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 0.94 8.06 -51.93 -0.42 0.53 16 35 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 36 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 39 H 0.07 1.30 7.42 -51.93 -0.39 0.91 16 40 H 0.04 0.73 7.13 -51.93 -0.37 0.36 16 41 H 0.03 0.57 5.86 -51.93 -0.30 0.27 16 42 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.12 2.08 7.97 -51.93 -0.41 1.67 16 44 H 0.10 1.43 7.34 -51.93 -0.38 1.05 16 45 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 46 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.39 2.58 9.06 45.56 0.41 2.99 16 48 H 0.14 2.18 8.06 -52.48 -0.42 1.76 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -31.27 401.02 -8.34 -39.61 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.77 Total: 6.71 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -1.89 Total: -2.75 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.92 Total: -43.89 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.18 Total: -17.89 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.27 -8.34 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448802392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.663 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds